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Tag microbial-ecology [107 articles]

Recent papers classified by the tag microbial-ecology.
  • Fine-scale phylogenetic architecture of a complex bacterial community.
    Nature, Vol. 430, No. 6999. (29 July 2004), pp. 551-554.
    by SG Acinas, V Klepac-Ceraj, DE Hunt, C Pharino, I Ceraj, DL Distel, MF Polz
    posted to diversity ecology marine microbial-ecology phylogeny prokaryotes by Thaverkamp on 2007-10-23 15:20:06 as read along with 4 people jmeppley bluto kerekesj mcox
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to diversity metagenomics microbial-ecology phylogeny prokaryotes by Thaverkamp on 2007-10-23 16:38:39 as read along with 12 people and 7 groups ana nickluscombe michC bluto agg19954 TaqSys azazello larsjuhljensen rvgomes mjetten jlgreen djkt structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
  • DNA evidence for global dispersal and probable endemicity of protozoa
    BMC Evolutionary Biology, Vol. 7 (13 September 2007), 162.
    by David Bass, Thomas A Richards, Lena Matthai, Victoria Marsh, Thomas Cavalier-Smith
    posted to biogeography protozoa microbial-ecology diversity by Thaverkamp on 2007-10-23 15:33:26 as *** along with 2 people and 1 group rabu jdelcampo Microbial-Ecology
  • Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies.
    Appl Environ Microbiol, Vol. 72, No. 11. (November 2006), pp. 7193-7204.
    by NA Ahlgren, G Rocap
    posted to culture ecotype light marine microbial-ecology phylogeny physiology synechococcus by Thaverkamp on 2007-10-24 14:59:49 as read along with 2 people and 1 group hwright Stenuite Microbial-Ecology
  • A PCR-based specific assay reveals a population of bacteria within the Chloroflexi associated with the reductive dehalogenation of polychlorinated biphenyls
    Microbiology, Vol. 151, No. 6. (1 June 2005), pp. 2039-2046.
    by Joy E Watts, Sonja K Fagervold, Harold D May, Kevin R Sowers
    posted to microbial-ecology by rabu on 2007-03-28 04:14:17 as ***
  • Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
    Nature (07 March 2007)
    by Ian Lo, Vincent J Denef, Nathan C Verberkmoes, Manesh B Shah, Daniela Goltsman, Genevieve Dibartolo, Gene W Tyson, Eric E Allen, Rachna J Ram, Chris J Detter, Paul Richardson, Michael P Thelen, Robert L Hettich, Jillian F Banfield
    posted to microbial-ecology by rabu on 2007-05-31 20:12:25 as **** along with 3 people and 3 groups jmeppley BoranKartal jlgreen microbiology_nijmegen iSEEM Green Lab
  • Microbial Endpoints: The Rationale for their Exclusion as Ecological Assessment Endpoints
    pp. 691-696.
    by Lawrence A Kapustka
    posted to microbial-ecology by rabu on 2007-03-28 01:12:17 as ***
  • Bacterial community composition determined by culture-independent and -dependent methods during propane-stimulated bioremediation in trichloroethene-contaminated groundwater
    Environmental Microbiology, Vol. 7, No. 2., 165.
    by Stephanie A Connon, Adisorn Tovanabootr, Mark Dolan, Kevin Vergin, Stephen J Giovannoni, Lewis Semprini
    posted to microbial-ecology by rabu on 2007-03-28 04:18:31 as **
  • A Shallow BTEX and MTBE Contaminated Aquifer Supports a Diverse Microbial Community
    Microbial Ecology, Vol. 48, No. 4. (1 December 2004), pp. 589-600.
    by KP Feris, K Hristova, B Gebreyesus, D Mackay, KM Scow
    posted to microbial-ecology by rabu on 2007-03-28 04:33:20 as **
  • Phylogenetic Characterization of a Polychlorinated-Dioxin- Dechlorinating Microbial Community by Use of Microcosm Studies
    Appl. Environ. Microbiol., Vol. 71, No. 8. (1 August 2005), pp. 4325-4334.
    by Naoko Yoshida, Nobutaka Takahashi, Akira Hiraishi
    posted to microbial-ecology by rabu on 2007-03-28 15:38:56 as **
  • Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community
    Environmental Microbiology, Vol. 9, No. 3. (March 2007), pp. 789-800.
    by Simek, Karel, Weinbauer, G Markus, Hornak, Karel, Jezbera, Jan, Nedoma, Jiri, Dolan, R John
    posted to microbial-ecology by rabu on 2007-03-28 04:21:05 as **
  • Molecular diversity and ecology of microbial plankton
    Nature, Vol. 437, No. 7057. (14 September 2005), pp. 343-348.
    by Stephen J Giovannoni, Ulrich Stingl
    posted to diversity evolution marine-microbiology microbial-ecology by jmeppley on 2008-01-10 18:13:24 as **** along with 5 people and 4 groups Stenuite jdelcampo beatrizfernandez vrich jlgreen African_Lakes_Limnology Microbial-Ecology Green Lab iSEEM
  • Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated archaea: the role of ammonia oxidizers
    BioEssays, Vol. 29, No. 1. (2007), pp. 11-14.
    by Ricardo Cavicchioli, Matthew Z Demaere, Torsten Thomas
    posted to community-genomics microbial-ecology by jmeppley on 2007-02-26 22:19:47 as *** along with 1 person and 1 group mjetten microbiology_nijmegen
  • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.
    J. Bacteriol., Vol. 173, No. 14. (1 July 1991), pp. 4371-4378.
    by TM Schmidt, EF Delong, NR Pace
    posted to 16s-rrna community-genomics microbial-ecology population-structure by jmeppley on 2007-05-01 18:00:40 as read
  • Population genomics in natural microbial communities
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 508-516.
    by Rachel J Whitaker, Jillian F Banfield
    posted to community-genomics microbial-ecology z-paper-background by jmeppley on 2006-08-26 00:21:46 as read along with 1 person bluto
  • Oral microbial communities in sickness and in health
    Trends in Microbiology, Vol. 13, No. 12. (December 2005), pp. 589-595.
    by Howard F Jenkinson, Richard J Lamont
    posted to community-ecology microbial-community microbial-ecology by jmeppley on 2005-11-29 02:01:21 as *** along with 1 person FmuO
  • Genome dynamics in a natural archaeal population
    PNAS, Vol. 104, No. 6. (6 February 2007), pp. 1883-1888.
    by Eric E Allen, Gene W Tyson, Rachel J Whitaker, John C Detter, Paul M Richardson, Jillian F Banfield
    posted to acid-mine-drainage community-genomics ferroplasma ferroplasma-acidarmanus microbial-ecology population-genetics by jmeppley on 2007-03-04 05:32:32 as read along with 1 person and 1 group kinestetika microbiology_nijmegen
  • Seasonal Variation in Microbial Communities and Organic Malodor Indicator Compound Concentrations in Various Types of Swine Manure Storage Systems
    J Environ Qual, Vol. 31, No. 6. (1 November 2002), pp. 2074-2085.
    by L Merrill, LJ Halverson
    posted to community-ecology microbial-ecology principal-components-analysis by jmeppley on 2008-04-30 19:16:07 as ***
  • Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances
    Molecular Ecology, Vol. 15, No. 7. (June 2006), pp. 1713-1731.
    by Xu, G Jianpin
    posted to community-genomics microbial-ecology by jmeppley on 2006-07-27 22:17:14 as *** along with 1 person bluto
  • Synchrony in aquatic microbial community dynamics
    ISME J, Vol. 1, No. 1. (0000), pp. 38-47.
    by Angela D Kent, Anthony C Yannarell, James A Rusak, Eric W Triplett, Katherine D Mcmahon
    posted to community-microbiology marine-microbiology microbial-ecology by jmeppley on 2008-05-14 12:34:12 as ** along with 1 person vrich
  • notes Metaproteomics: A New Approach for Studying Functional Microbial Ecology
    Microbial Ecology
    by Pierre-Alain Maron, Lionel Ranjard, Christophe Mougel, Philippe Lemanceau
    posted to microbial-ecology proteomics z-paper-background z-paper-strainer by jmeppley on 2007-03-14 04:45:21 as read along with 3 people operon rabu bluto
  • notes Can You Bottle Nature? The Roles of Microcosms in Ecological Research
    Ecology, Vol. 77, No. 3. (1996), pp. 663-664.
    by Curtis C Daehler, Donald R Strong
    posted to ecology microbial-ecology microcosm x-microcosm by jmeppley on 2005-11-17 01:35:30 as read
  • Molecular analysis of the bacterial microbiota in the human stomach
    PNAS, Vol. 103, No. 3. (17 January 2006), pp. 732-737.
    by Elisabeth M Bik, Paul B Eckburg, Steven R Gill, Karen E Nelson, Elizabeth A Purdom, Fritz Francois, Guillermo Perez-Perez, Martin J Blaser, David A Relman
    posted to community-genomics ecology human-microbiology microbial-ecology by jmeppley on 2006-01-31 20:39:04 as ***
  • Microbial Communities in the World's Largest Acidic Volcanic Lake, Kawah Ijen in Indonesia, and in the Banyupahit River Originating from It
    Microbial Ecology
    by Ansje J Lã¶hr, Anniet M Laverman, Martin Braster, Nico M van Straalen, Wilfred FM Rã¶ling
    posted to microbial-community microbial-ecology microbiology by jmeppley on 2006-10-19 15:25:42 as **
  • Multivariate analyses in microbial ecology
    FEMS Microbiology Ecology, Vol. 62, No. 2. (2007), pp. 142-160.
    by Alban Ramette
    posted to ecological-statistics microbial-ecology by jmeppley on 2008-04-29 21:07:20 as ***** along with 4 people and 1 group Stenuite Olaf_Ilzins JochimsenMC vrich Microbial-Ecology
  • notes Classification and Characterization of Heterotrophic Microbial Communities on the Basis of Patterns of Community-Level Sole-Carbon-Source Utilization
    Appl. Environ. Microbiol., Vol. 57, No. 8. (1 August 1991), pp. 2351-2359.
    by Jay L Garland, Aaron L Mills
    posted to microbial-community microbial-ecology by jmeppley on 2006-09-12 21:15:09 as **
  • notes Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria.
    Appl. Environ. Microbiol., Vol. 56, No. 3. (1 March 1990), pp. 776-781.
    by V Torsvik, K Salte, R Sorheim, J Goksoyr
    posted to microbial-diversity microbial-ecology by jmeppley on 2006-08-30 19:01:31 as ***
  • The Relationship between Species Diversity and Stability: An Experimental Approach with Protozoa and Bacteria
    Ecology, Vol. 49, No. 6. (1968), pp. 1091-1101.
    by NG Hairston, JD Allan, RK Colwell, DJ Futuyma, J Howell, MD Lubin, J Mathias, JH Vandermeer
    posted to bacteria diversity diversity-stability ecology microbial-ecology stability x-diversity-stability by jmeppley on 2005-10-20 21:36:10 as **
  • A microbial world within us
    Molecular Microbiology, Vol. 59, No. 6. (March 2006), pp. 1639-1650.
    by Erwin G Zoetendal, Elaine E Vaughan, Willem M de Vos
    posted to human-microbiology microbial-ecology by jmeppley on 2006-07-27 22:21:13 as *** along with 1 person madhadron
  • What can microbial genetics teach sociobiology?
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Kevin R Foster, Katie Parkinson, Christopher R Thompson
    posted to coexistence cooperation genetics microbial-ecology microbial-genetics mutualism sociobiology by jmeppley on 2007-01-06 05:28:32 as * along with 3 people adriandefroment mauricelee CareyNadell
  • Soil Microbial Community Responses to Additions of Organic Carbon Substrates and Heavy Metals (Pb and Cr)
    Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 7679-7689.
    by Cindy H Nakatsu, Nadia Carmosini, Brett Baldwin, Federico Beasley, Peter Kourtev, Allan Konopka
    posted to community-ecology disturbance diversity microbial-ecology microcosm by jmeppley on 2005-12-17 03:17:35 as **
  • Emergent biogeography of microbial communities in a model ocean.
    Science, Vol. 315, No. 5820. (30 March 2007), pp. 1843-1846.
    by MJ Follows, S Dutkiewicz, S Grant, SW Chisholm
    posted to microbial-ecology by jmeppley on 2007-05-10 17:25:46 as ** along with 7 people and 4 groups jdelcampo nurban emayorga cursonivel1 andrewirwin vrich jlgreen Microbial-Ecology cursonivel1 Green Lab iSEEM
  • notes Metaproteomics: studying functional gene expression in microbial ecosystems.
    Trends Microbiol, Vol. 14, No. 2. (February 2006), pp. 92-97.
    by P Wilmes, PL Bond
    posted to community-genomics gene-expression microbial-ecology proteomics by jmeppley on 2006-07-27 22:19:48 as read along with 6 people Yanno knaseanka bluto nitiniitk barberan mcox
  • Community genomics in microbial ecology and evolution
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 489-498.
    by Eric E Allen, Jillian F Banfield
    posted to community-ecology community-genomics ecology evolution microbial-ecology microbial-genomics x-community-genomics by jmeppley on 2006-05-19 21:05:55 as read along with 4 people and 2 groups knaseanka mcox jlgreen djkt Green Lab iSEEM
  • Assembly of the human intestinal microbiota
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 517-523.
    by Les Dethlefsen, Paul B Eckburg, Elisabeth M Bik, David A Relman
    posted to human-microbiology intestinal-fauna microbial-ecology by jmeppley on 2006-08-26 00:23:56 as **
  • Microbial ecology and evolution: a ribosomal RNA approach.
    Annu Rev Microbiol, Vol. 40 (1986), pp. 337-365.
    by GJ Olsen, DJ Lane, SJ Giovannoni, NR Pace, DA Stahl
    posted to evolutionary-ecology rrna ecology evolution microbial-ecology by jmeppley on 2006-08-30 18:25:11 as read along with 3 people and 1 group jjmontem jdelcampo rvgomes Microbial-Ecology
  • Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
    posted to community-genomics microbial-community microbial-diversity microbial-ecology microcosm by jmeppley on 2006-06-05 19:14:46 as ** along with 15 people and 9 groups Yanno ana dayjm dchughes cmm neveaire hcmorton michC bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
  • Genotypic Microbial Community Profiling: A Critical Technical Review
    Microbial Ecology, Vol. 54, No. 2. (March 2007), pp. 276-289.
    by Andreas Nocker, Mark Burr, Anne K Camper
    posted to microbiology microbial-ecology community-genomics by jmeppley on 2007-03-12 20:22:41 as ** along with 4 people cbg rabu ameliasilva vrich
  • Unifying ecology to include all creatures great and small
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 473-473.
    by Claire M Horner-Devine, Brendan J Bohannan
    posted to microbial-ecology by jmeppley on 2006-08-26 00:25:00 as read along with 1 person jjmontem
  • Genetic Variance in the Composition of Two Functional Groups (Diazotrophs and Cyanobacteria) from a Hypersaline Microbial Mat
    Appl. Environ. Microbiol., Vol. 72, No. 2. (1 February 2006), pp. 1207-1217.
    by Anthony C Yannarell, Timothy F Steppe, Hans W Paerl
    posted to biofilm diversity diversity-heterogeneity heterogeneity microbial-ecology by jmeppley on 2006-07-28 07:49:27 as ***
  • The genomic code: inferring Vibrionaceae niche specialization
    Nature Reviews Microbiology, Vol. 4, No. 9. (07 August 2006), pp. 697-704.
    by Jerry F Reen, Salvador Almagro-Moreno, David Ussery, Fidelma E Boyd
    posted to genomics microbial-community microbial-diversity microbial-ecology niche by jmeppley on 2006-08-16 19:23:41 as ***
  • Genetic exchange across a species boundary in the archaeal genus ferroplasma.
    Genetics, Vol. 177, No. 1. (September 2007), pp. 407-416.
    by JM Eppley, GW Tyson, WM Getz, JF Banfield
    posted to bioinformatics community-genomics evolution ferroplasma ferroplasma-acidarmanus microbial-ecology microbial-species software by jmeppley on 2007-10-12 02:59:50 as read
  • Annually reoccurring bacterial communities are predictable from ocean conditions.
    Proc Natl Acad Sci U S A (22 August 2006)
    by Jed A A Fuhrman, Ian Hewson, Michael S S Schwalbach, Joshua A A Steele, Mark V V Brown, Shahid Naeem
    posted to environment microbial-ecology niche by jmeppley on 2006-09-01 22:17:34 as read
  • notes Microcosm Experiments have Limited Relevance for Community and Ecosystem Ecology
    Ecology, Vol. 77, No. 3. (1996), pp. 677-680.
    by Stephen R Carpenter
    posted to community-ecology ecology microbial-ecology microcosm x-microcosm by jmeppley on 2005-11-17 01:37:26 as read
  • Spatial scaling of microbial biodiversity
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 501-507.
    by Jessica Green, Brendan J Bohannan
    posted to biodiversity microbial-ecology scaling species-area-relationship x-spatial-scale by jmeppley on 2006-08-26 00:23:15 as *** along with 5 people and 3 groups cmm mcox vrich jlgreen djkt FAB-lab Green Lab iSEEM
  • Finding the Needles in the Metagenome Haystack
    Microbial Ecology
    by George A Kowalchuk, Arjen GCL Speksnijder, Kun Zhang, Robert M Goodman, Johannes A van Veen
    posted to microbial-ecology by jmeppley on 2007-03-12 20:22:52 as ** along with 5 people Yanno bluto wenhan niallhaslam dayjm
  • What immunologists should know about bacterial communities of the human bowel
    Seminars in Immunology, Vol. In Press, Corrected Proof
    by Gerald W Tannock
    posted to human-microbiology microbial-ecology by jmeppley on 2006-10-11 00:38:58 as ***
  • Clonal Adaptive Radiation in a Constant Environment
    Science, Vol. 313, No. 5786. (28 July 2006), pp. 514-517.
    by Ram Maharjan, Shona Seeto, Lucinda Notley-Mcrobb, Thomas Ferenci
    posted to diversity-heterogeneity microbial-ecology by jmeppley on 2006-07-28 07:56:59 as *** along with 2 people and 1 group cmm rabu FAB-lab
  • Where there's muck there's microbes
    Nature Reviews Microbiology, Vol. 4, No. 9. (2006), pp. 646-647.
    by Helena Seth-Smith, Stephen Bentley
    posted to genomics microbial-ecology microbiology by jmeppley on 2006-08-16 19:24:24 as ***
  • The Microbial Engines That Drive Earth's Biogeochemical Cycles
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039.
    by Paul G Falkowski, Tom Fenchel, Edward F Delong
    posted to biogeochemistry microbial-ecology by jdelcampo on 2008-05-23 17:25:16 as ***** along with 4 people and 3 groups kinestetika tharris djkt fornstar microbiology_nijmegen Microbial-Ecology iSEEM
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