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Tag microarrays [167 articles]

Recent papers classified by the tag microarrays.
  • A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
    BMC Bioinformatics, Vol. 7 (06 November 2006), 489.
    by Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J Stoeckert, Joseph White, Patricia L Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A Ball, Alvis Brazma
    posted to mage microarrays by zakmck on 2006-11-29 13:23:04 as read along with 4 people bertelsen shikin jfr dansullivanblk
  • Neural network analysis of lymphoma microarray data: prognosis and diagnosis near-perfect.
    BMC Bioinformatics, Vol. 4, No. 1. (10 April 2003)
    by MC O'Neill, L Song
    posted to bioinformatics microarrays by waltsb on 2005-03-09 21:18:50 as ** along with 1 person and 1 group macavity1g PBRC_HGL
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to microarrays review statistics by troels_marstrand on 2006-01-05 12:18:22 as read along with 8 people and 1 group aalibes textoris wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
  • Uncovering evolutionary patterns of gene expression using microarrays
    Trends in Ecology & Evolution, Vol. 21, No. 1. (January 2006), pp. 29-37.
    by Jose M Ranz, Carlos A Machado
    posted to evolutionary expression gene microarrays of patterns uncovering using by sunye on 2007-12-07 09:00:55 as ** along with 8 people and 5 groups jmeppley marcius balicea tabu cmm sameetmehta natstreet klo Bioinformatics ProkaryoteInterestGroup FAB-lab BioinfoCIPF SGU-CIPF
  • Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
    BMC Bioinformatics, Vol. 8 (19 September 2007), 350.
    by Guangan Hu, Manuel Llinas, Jingguang Li, Peter R Preiser, Zbynek Bozdech
    posted to design microarrays probe by stsaft on 2008-06-06 18:54:11 as ** along with 1 person GeeSharpMinor
  • The importance of thermodynamic equilibrium for high throughput gene expression arrays.
    Biophys J, Vol. 84, No. 1. (January 2003), pp. 124-135.
    by G Bhanot, Y Louzoun, J Zhu, C DeLisi
    posted to hybridization kinetics microarrays modeling simulation by stsaft on 2008-03-31 03:55:50 as ** along with 1 person and 1 group condon beta
  • On-chip PCR amplification of very long templates using immobilized primers on glassy surfaces
    Biosensors and Bioelectronics, Vol. 20, No. 8. (15 February 2005), pp. 1491-1498.
    by Markus Nickisch-Rosenegk, Xenia Marschan, Dennie Andresen, Alexandra Abraham, Christian Heise, Frank F Bier
    posted to microarrays pcr by stsaft on 2008-06-09 10:06:34 as **
  • Accurate multiplex gene synthesis from programmable DNA microchips
    Nature, Vol. 432, No. 7020. (23 December 2004), pp. 1050-1054.
    by Jingdong Tian, Hui Gong, Nijing Sheng, Xiaochuan Zhou, Erdogan Gulari, Xiaolian Gao, George Church
    posted to biology dna microarrays synthesis synthetic templated by stsaft on 2008-06-06 21:11:25 as ** along with 3 people rklancer opheliav mmt
  • Global Assessment of Cross-Hybridization for Oligonucleotide Arrays
    J Biomol Tech, Vol. 17, No. 2. (1 April 2006), pp. 163-172.
    by Cavan Reilly, Arvind Raghavan, Paul Bohjanen
    posted to cross hybridization microarrays by stsaft on 2007-03-25 05:42:03 as read
  • The Fidelity of the Tag-Antitag System
    Lecture Notes In Computer Science, Vol. 2340 (2002), pp. 138-149.
    by John A Rose, Russel J Deaton, Masami Hagiya, Akira Suyama
    edited by N Jonoska, NC Seeman
    posted to dna dna_computing microarrays tag-antitag by stsaft on 2006-02-28 00:12:08 as read
  • A Competitive Kinetic Model of Nucleic Acid Surface Hybridization in the Presence of Point Mutants
    Biophys. J., Vol. 90, No. 3. (1 February 2006), pp. 831-840.
    by J Bishop, S Blair, AM Chagovetz
    posted to kinetics microarrays modeling simulation thermodynamics by stsaft on 2008-03-31 03:52:42 as **
  • Expression monitoring by hybridization to high-density oligonucleotide arrays.
    Nat Biotechnol, Vol. 14, No. 13. (December 1996), pp. 1675-1680.
    by DJ Lockhart, H Dong, MC Byrne, MT Follettie, MV Gallo, MS Chee, M Mittmann, C Wang, M Kobayashi, H Horton, EL Brown
    posted to microarray microarrays by stsaft on 2007-04-20 22:53:33 as ** along with 3 people and 1 group ggrot Dax42 jeremymiller GeschwindLab
  • A statistical model for microarrays, optimal estimation algorithms, and limits of performance
    Signal Processing, IEEE Transactions on [see also Acoustics, Speech, and Signal Processing, IEEE Transactions on], Vol. 54, No. 6. (2006), pp. 2444-2455.
    by H Vikalo, B Hassibi, A Hassibi
    posted to estimation microarrays by stsaft on 2008-07-03 07:07:54 as **
  • Convective flow effects on DNA biosensors
    Biosensors and Bioelectronics, Vol. 22, No. 9-10. (15 April 2007), pp. 2192-2198.
    by J Bishop, S Blair, A Chagovetz
    posted to diffusion hybridization kinetics microarrays by stsaft on 2007-04-30 21:38:04 as **
  • Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform.
    Nucleic Acids Res, Vol. 34, No. 18. (2006)
    by CH Cannon, CS Kua, EK Lobenhofer, P Hurban
    posted to microarray microarrays universal universal_microarrays by stsaft on 2007-03-26 23:10:53 as read
  • Post-analysis follow-up and validation of microarray experiments.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 509-514.
    by RF Chuaqui, RF Bonner, CJ Best, JW Gillespie, MJ Flaig, SM Hewitt, JL Phillips, DB Krizman, MA Tangrea, M Ahram, WM Linehan, V Knezevic, MR Emmert-Buck
    posted to errors microarrays reference review validation by stsaft on 2008-06-02 23:09:02 as ** along with 2 people and 1 group irenas ziquje dbk-lab
  • Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips
    Nucl. Acids Res., Vol. 29, No. 11. (1 June 2001), pp. 2303-2313.
    by Vadim A Vasiliskov, Dmitry V Prokopenko, Andrei D Mirzabekov
    posted to thermodynamics microarrays kinetics dna by stsaft on 2007-01-19 22:44:11 as *****
  • A Versatile Assay for High-Throughput Gene Expression Profiling on Universal Array Matrices
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 878-885.
    by Jian-Bing Fan, Joanne M Yeakley, Marina Bibikova, Eugene Chudin, Eliza Wickham, Jing Chen, Dennis Doucet, Philippe Rigault, Baohong Zhang, Richard Shen, Celeste Mcbride, Hai-Ri Li, Xiang-Dong Fu, Arnold Oliphant, David L Barker, Mark S Chee
    posted to microarrays universal universal_microarrays by stsaft on 2007-03-25 04:17:58 as ** along with 1 person vplagnol
  • YODA: selecting signature oligonucleotides
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1365-1370.
    by Eric K Nordberg
    posted to microarray microarrays oligo_probes by stsaft on 2007-03-25 05:35:28 as ** along with 2 people cthachuk nedwards
  • Selecting signature oligonucleotides to identify organisms using DNA arrays
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1340-1349.
    by L Kaderali, A Schliep
    posted to microarrays oligo_probes by stsaft on 2006-02-27 23:58:54 as ** along with 1 person nedwards
  • Medical applications of microarray technologies: a regulatory science perspective.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 474-479.
    by EF Petricoin, JL Hackett, LJ Lesko, RK Puri, SI Gutman, K Chumakov, J Woodcock, DW Feigal, KC Zoon, FD Sistare
    posted to applications microarrays r21 review by stsaft on 2008-06-05 22:10:11 as ** along with 1 person jdiggans
  • OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
    Nucl. Acids Res., Vol. 31, No. 12. (15 June 2003), pp. 3057-3062.
    by Jean-Marie Rouillard, Michael Zuker, Erdogan Gulari
    posted to bioinformatics codeword codeword_design microarrays oligo_probes probe by stsaft on 2006-04-14 08:08:27 as **** along with 4 people malcook cthachuk nedwards yoanjacquemin
  • Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria.
    Appl Environ Microbiol, Vol. 70, No. 12. (December 2004), pp. 7161-7172.
    by B Castiglioni, E Rizzi, A Frosini, K Sivonen, P Rajaniemi, A Rantala, MA Mugnai, S Ventura, A Wilmotte, C Boutte, S Grubisic, P Balthasart, C Consolandi, R Bordoni, A Mezzelani, C Battaglia, G De Bellis
    posted to microarrays universal universal_microarrays by stsaft on 2007-03-25 03:48:26 as ** along with 1 person Olaf_Ilzins
  • Coupled Equilibrium Model of Hybridization Error for the DNA Microarray and Tag–Antitag Systems
    NanoBioscience, IEEE Transactions on, Vol. 6, No. 1. (2007), pp. 18-27.
    by John A Rose, Russell J Deaton, Masami Hagiya, Akira Suyama
    posted to codeword_design microarrays thermodynamics universal_microarrays by stsaft on 2008-04-22 20:38:30 as **
  • A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
    Nature Biotechnology, Vol. 24, No. 7. (02 July 2006), pp. 832-840.
    by Winston P Kuo, Fang Liu, Jeff Trimarchi, Claudio Punzo, Michael Lombardi, Jasjit Sarang, Mark E Whipple, Malini Maysuria, Kyle Serikawa, Sun Y Lee, Donald Mccrann, Jason Kang, Jeffrey R Shearstone, Jocelyn Burke, Daniel J Park, Xiaowei Wang, Trent L Rector, Paola Ricciardi-Castagnoli, Steven Perrin, Sangdun Choi, Roger Bumgarner, Ju H Kim, Glenn F Short, Mason W Freeman, Brian Seed, Roderick Jensen, George M Church, Eivind Hovig, Connie L Cepko, Peter Park, Lucila Ohno-Machado, Tor-Kristian Jenssen
    posted to arrays comparison microarray microarrays platforms validation by stsaft on 2008-06-12 19:07:49 as ** along with 2 people and 2 groups jfr dchughes G4ID Genetics-of-Gambling
  • notes Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
    Nucleic Acids Research, Vol. 33, No. 19. (2005), pp. 6114-6123.
    by Xingyuan Li, Zhili He, Jizhong Zhou
    posted to microarrays oligo_probes universal_microarrays by stsaft on 2007-03-25 05:32:14 as ** along with 2 people cthachuk GeeSharpMinor
  • Comparative modeling and analysis of microfluidic and conventional DNA microarrays
    Analytical Biochemistry, Vol. 348, No. 2. (15 January 2006), pp. 284-293.
    by James A Benn, Jenny Hu, Bradley J Hogan, Rebecca C Fry, Leona D Samson, Todd Thorsen
    posted to diffusion hybridization kinetics microarrays simulation by stsaft on 2007-04-30 21:36:48 as ****
  • Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesis.
    Nucleic acids research, Vol. 32, No. 17. (2004), pp. 5011-5018.
    by KE Richmond, MH Li, MJ Rodesch, M Patel, AM Lowe, C Kim, LL Chu, N Venkataramaian, SF Flickinger, J Kaysen, PJ Belshaw, MR Sussman, F Cerrina
    posted to microarrays pcr synthesis by stsaft on 2008-06-09 10:09:42 as **
  • Intelligent DNA chips: logical operation of gene expression profiles on DNA computers
    Genome Inform Ser Workshop Genome Inform, Vol. 11 (2000), pp. 33-42.
    by Y Sakakibara, A Suyama
    posted to dna microarrays universal by stsaft on 2006-02-28 00:29:52 as **
  • notes Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
    Nucl. Acids Res., Vol. 32, No. 12. (8 July 2004), e99.
    by Cheng-Chung Chou, Chun-Houh Chen, Te-Tsui Lee, Konan Peck
    posted to cross hybridization length microarrays modeling probe by stsaft on 2008-02-28 18:39:17 as ***** along with 2 people aswin bertelsen
  • Universal DNA tag systems: a combinatorial design scheme
    J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 503-519.
    by A Ben-Dor, R Karp, B Schwikowski, Z Yakhini
    posted to dna dna_computing microarrays universal by stsaft on 2006-02-28 00:13:25 as read
  • Assessing the Potential Effect of Cross-Hybridization on Oligonucleotide Microarrays
    Methods of Microarray Data Analysis III (2004), pp. 185-198.
    by Seman Kachalo, Zarema Arbieva, Jie Liang
    posted to cross hybridization microarrays modeling by stsaft on 2008-02-28 18:41:45 as **
  • notes On Limits of Performance of Dna Microarrays
    Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 2006 IEEE International Conference on, Vol. 2 (2006), pp. II-II.
    by H Vikalo, B Hassibi, A Hassibi
    posted to cross hybridization kinetics microarrays modeling by stsaft on 2008-02-28 21:54:01 as **
  • GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by JC Huang, QD Morris, TR Hughes, BJ Frey
    posted to cross hybridization kinetics microarrays by stsaft on 2008-02-28 18:31:17 as **
  • notes Computer Simulation Study of Molecular Recognition in Model DNA Microarrays
    Biophys. J., Vol. 91, No. 6. (15 September 2006), pp. 2227-2236.
    by Arthi Jayaraman, Carol K Hall, Jan Genzer
    posted to cross hybridization kinetics microarrays modeling by stsaft on 2008-02-28 18:38:19 as *****
  • Optimized in situ construction of oligomers on an array surface.
    Nucleic Acids Res, Vol. 30, No. 20. (15 October 2002)
    by AC Tolonen, DF Albeanu, JF Corbett, H Handley, C Henson, P Malik
    posted to microarray microarrays oligo_probes probe by stsaft on 2007-04-20 21:36:29 as **
  • Modeling of DNA hybridization kinetics for spatially resolved biochips
    Analytical Biochemistry, Vol. 317, No. 2. (15 June 2003), pp. 186-200.
    by David Erickson, Dongqing Li, Ulrich J Krull
    posted to hybridization kinetics microarrays model simulation thermodynamics by stsaft on 2008-03-31 03:49:32 as **
  • The next generation of microarray research: applications in evolutionary and ecological genomics
    Heredity, Vol. aop, No. current.
    by SH Shiu, JO Borevitz,
    posted to microarrays r21 review sfp snp by stsaft on 2008-06-11 00:24:27 as **
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
    posted to dna microarrays by stsaft on 2006-02-27 23:54:32 as read along with 9 people and 1 group gabe_rosser dragonrez Dax42 fisherp jeremymiller tvdbulck talponer frohike shikin GeschwindLab
  • Expression Profiler: next generation - an online platform for analysis of microarray data
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, M Kull, A Torrente, U Sarkans, J Vilo, A Brazma
    posted to expression_profiler microarrays microrarray_analysis by siebert on 2008-08-26 16:52:00 as read along with 1 person fisherp
  • Genetic reconstruction of a functional transcriptional regulatory network
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick JJ Killion, Vishwanath RR Iyer
    posted to experimental expression microarrays regulation regulatory_networks s_cerevisiae transcription transcription_regulation by siebert on 2008-07-30 14:13:28 as read along with 10 people and 6 groups dpollard xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Revealing modular organization in the Yeast transcriptional network
    Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377.
    by J Ihmels, G Friedlander, S Bergmann, O Sarig, Y Ziv, N Barkai
    posted to clustering microarray_analysis microarrays s_cerevisiae transcription transcription_modules by siebert on 2008-08-26 14:39:08 as read along with 5 people and 2 groups adepace nickluscombe natstreet karfunkel ellakat EisenLab EBI-regulation
  • Defining transcription modules using large-scale gene expression data
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 1993-2003.
    by J Ihmels, S Bergmann, N Barkai
    posted to clustering microarrays microrarray_analysis s_cerevisiae transcription transcription_modules by siebert on 2008-08-27 15:03:32 as read along with 4 people and 3 groups marcius adepace natstreet tvdbulck EisenLab BioinfoCIPF SGU-CIPF
  • Sequence dependence of cross-hybridization on short oligo microarrays.
    Nucleic Acids Res, Vol. 33, No. 9. (2005)
    by C Wu, R Carta, L Zhang
    posted to microarrays by RMGraze on 2005-10-25 21:37:16 as ** along with 1 person nicholso
  • Combining mapping and arraying: An approach to candidate gene identification
    PNAS, Vol. 99, No. 23. (12 November 2002), pp. 14903-14906.
    by ML Wayne, LM Mcintyre
    posted to microarrays sex_comb by RMGraze on 2006-06-07 17:47:17 as ** along with 1 person fisherp
  • Gene selection and classification of microarray data using random forest.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Díaz-Uriarte, S Alvarez de Andrés
    posted to forest gene microarrays random selection by rdiaz on 2006-04-20 00:29:59 as read along with 5 people jyuh jfr lp2 ptrobajo jjrodriguez
  • NCBI GEO: mining tens of millions of expression profiles--database and tools update.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by T Barrett, DB Troup, SE Wilhite, P Ledoux, D Rudnev, C Evangelista, IF Kim, A Soboleva, M Tomashevsky, R Edgar
    posted to meta-analisi microarrays by pziarsolo on 2007-04-25 10:32:30 as ** along with 7 people giovenko jyuh jfr balajis hpiwowar incovoma tvdbulck
  • Uncovering quantitative protein interaction networks for mouse PDZ domains using protein microarrays.
    J Am Chem Soc, Vol. 128, No. 17. (3 May 2006), pp. 5913-5922.
    by MA Stiffler, VP Grantcharova, M Sevecka, G MacBeath
    posted to microarrays pdz by pdelosri on 2006-11-07 23:15:43 as ** along with 1 person and 1 group anyacopland EPFL_SB_ITP_LBS
  • Biophysics: Melting the double helix
    Nat Phys, Vol. 2, No. 1. (January 2006), pp. 13-14.
    by Michel Peyrard
    posted to dna dna-melting microarrays thermal-equivalence thermodynamics by niallhaslam on 2008-07-02 13:05:56 as read
  • Global Transcription Profiling Reveals Comprehensive Insights into Hypoxic Response in Arabidopsis
    Plant Physiol., Vol. 137, No. 3. (1 March 2005), pp. 1115-1129.
    by Fenglong Liu, Tara Vantoai, Linda P Moy, Geoffrey Bock, Lara D Linford, John Quackenbush
    posted to regulation oxygen microarrays by mtruksa on 2008-09-04 21:52:47 as **
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