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Tag method [879 articles]

Recent papers classified by the tag method.
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to method by zhouyu on 2008-04-01 13:36:45 as ** along with 54 people and 3 groups Nici jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega FAB-lab Bioinformatics baker-group
  • BiskitA software platform for structural bioinformatics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 769-770.
    by Grunberg, Raik, Nilges, Michael, Leckner, Johan
    posted to method by zhouyu on 2008-04-02 09:12:03 as **
  • Information systems security design methods: implications for information systems development
    ACM Computing Surveys, Vol. 25, No. 4. (December 1993), pp. 375-414.
    by Richard Baskerville
    posted to design method security by zemeigo on 2005-07-27 08:49:19 as ** along with 2 people hkl dhein1030
  • A face(book) in the crowd: social Searching vs. social browsing
    (2006), pp. 167-170.
    by Cliff Lampe, Nicole Ellison, Charles Steinfield
    posted to method search_browse by yteng2 on 2008-03-07 06:40:21 as ** along with 16 people and 13 groups rbudiu nataliaibanez jacksonfox leei vanderwal nic221 domenico79 brusilovsky azygmunt mook3000 jenna rlai mjchernyk vmircevski tyttivir eviil UX research updates CMU-HCII Blog_and_Wiki_Research ubc-ucl Usable_Security SFX-Verde-team-MITLibraries CDG social_navigation AGH-IISG Adaptive-Web MITCCI FaceBook research PROFCOM
  • Efficient combination of multiple word models for improved sequence comparison.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2529-2533.
    by X Huang, L Ye, HH Chou, IH Yang, KM Chao
    posted to 321 cited combination method by yoanjacquemin on 2008-02-11 09:57:43 as **
  • Mass spectrometry-based functional proteomics: from molecular machines to protein networks
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 807-815.
    by Thomas Kocher, Giulio Superti-Furga
    posted to interaction maspit mass method protein spectrometry by yeastyboy on 2007-10-16 14:56:20 as *** along with 1 person jyuh
  • Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 311-316.
    by S Iiizumi, Y Nomura, S So, K Uegaki, K Aoki, K Shibahara, N Adachi, H Koyama
    posted to cells es gene method targeting by yeastyboy on 2006-11-20 16:03:20 as *** along with 2 people jyuh shimi002
  • Heat-inducible autolytic vector for high-throughput screening.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 319-323.
    by L Xu, S Li, C Ren, Z Cai, Z Lin
    posted to autolytic expression method protein by yeastyboy on 2006-12-01 09:10:35 as **
  • MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules
    Nature Genetics, Vol. 37, No. 3. (30 January 2005), pp. 311-319.
    by Mamie Z Li, Stephen J Elledge
    posted to cloning in method recombination vivo by yeastyboy on 2006-11-19 10:02:14 as ***** along with 1 person jyuh
  • Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond.
    Biotechniques, Vol. 40, No. 5. (May 2006), pp. 625-644.
    by B Suter, D Auerbach, I Stagljar
    posted to method yeast by yeastyboy on 2006-11-19 09:32:39 as read along with 3 people jyuh Dualsystems bootsy
  • Detection of microRNAs by Northern blot analyses using LNA probes.
    Methods, Vol. 43, No. 2. (October 2007), pp. 140-145.
    by E Várallyay, J Burgyán, Z Havelda
    posted to lna method mirna by yavanna on 2008-01-01 03:36:49 as ** along with 1 person jyuh
  • There is a virus going around
    Nature Methods, Vol. 5, No. 1., pp. 6-7.
    by Katherine Stevens
    posted to method by yavanna on 2008-01-04 12:33:18 as ***
  • Integrating high-content screening and ligand-target prediction to identify mechanism of action.
    Nat Chem Biol, Vol. 4, No. 1. (January 2008), pp. 59-68.
    by DW Young, A Bender, J Hoyt, E McWhinnie, GW Chirn, CY Tao, JA Tallarico, M Labow, JL Jenkins, TJ Mitchison, Y Feng
    posted to chemoinformatics datamining hcs method statistics by Yanno on 2007-12-20 14:55:57 as read along with 3 people jyuh kuhn kengg
  • Proteomic profiling of metalloprotease activities with cocktails of active-site probes
    Nat Chem Biol, Vol. 2, No. 5. (May 2006), pp. 274-281.
    by Stephan A Sieber, Sherry Niessen, Heather S Hoover, Benjamin F Cravatt
    posted to assay drugdiscovery library method protease by Yanno on 2006-05-15 14:29:37 as ***
  • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    Nature Biotechnology, Vol. 23, No. 5. (17 April 2005), pp. 617-621.
    by Yasushi Ishihama, Toshitaka Sato, Tsuyoshi Tabata, Norimasa Miyamoto, Koji Sagane, Takeshi Nagasu, Yoshiya Oda
    posted to isotope method ms quantification by Yanno on 2005-10-18 16:56:19 as read
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to method networks reference review statistics by Yanno on 2008-02-18 08:32:46 as read along with 15 people and 1 group zdai paolomarcatili jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai GeneGo
  • Bayesian clinical trials
    Nature Reviews Drug Discovery, Vol. 5, No. 1., pp. 27-36.
    by Donald A Berry
    posted to clinicaltrial drugdiscovery method statistics by Yanno on 2006-01-09 13:39:42 as read along with 2 people and 1 group jyuh okarsligil Bioinformatics
  • Directed evolution by in vitro compartmentalization
    Nature Methods, Vol. 3, No. 7., pp. 561-570.
    by Oliver J Miller, Kalia Bernath, Jeremy J Agresti, Gil Amitai, Bernard T Kelly, Enrico Mastrobattista, Valérie Taly, Shlomo Magdassi, Dan S Tawfik, Andrew D Griffiths
    posted to diagnostics hcs hts method molecularbiology by Yanno on 2006-08-29 10:42:49 as read
  • BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions
    Nature Methods, Vol. 3, No. 7., pp. 551-559.
    by Frank Diehl, Meng Li, Yiping He, Kenneth W Kinzler, Bert Vogelstein, Devin Dressman
    posted to diagnostics hcs hts method molecularbiology by Yanno on 2006-08-29 10:27:41 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • A New Data Analysis Method to Determine Binding Constants of Small Molecules to Proteins Using Equilibrium Analytical Ultracentrifugation with Absorption Optics
    Analytical Biochemistry, Vol. 299, No. 1. (01 December 2001), pp. 98-107.
    by Michelle Arkin, J Lear
    posted to chemical method by Yanno on 2006-05-30 15:28:10 as read
  • Target discovery in small-molecule cell-based screens by in situ proteome reactivity profiling
    Nature Biotechnology, Vol. 23, No. 10. (02 October 2005), pp. 1303-1307.
    by Michael J Evans, Alan Saghatelian, Erik J Sorensen, Benjamin F Cravatt
    posted to method targetbeads by Yanno on 2006-05-30 15:26:19 as read
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to bioinformatics datamining method by Yanno on 2008-01-02 14:54:55 as read along with 6 people and 1 group ellakat miguel RMGraze indigoviolet jdiggans yevishere EisenLab
  • Encoded self-assembling chemical libraries
    Nat Biotech, Vol. 22, No. 5. (May 2004), pp. 568-574.
    by Samu Melkko, Jorg Scheuermann, Christoph E Dumelin, Dario Neri
    posted to chemical drugdiscovery library method by Yanno on 2005-11-24 10:27:51 as read
  • Inference in Bayesian networks
    Nature Biotechnology, Vol. 24, No. 1., pp. 51-53.
    by Chris J Needham, James R Bradford, Andrew J Bulpitt, David R Westhead
    posted to datamining method statistics by Yanno on 2006-02-01 11:59:32 as *** along with 10 people and 3 groups Pragmatist quianominorleo jrw garyfeng okarsligil Borelli ddahlem lujiec kozlak jo_davies ReadingLab Bioinformatics ThinkBridge
  • Comparisons and validation of statistical clustering techniques for microarray gene expression data.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466.
    by S Datta, S Datta
    posted to datamining method statistics by Yanno on 2006-02-01 11:56:45 as *** along with 6 people ujh textoris tvdbulck bertelsen echsberde dps
  • How does gene expression clustering work?
    Nature Biotechnology, Vol. 23, No. 12., pp. 1499-1501.
    by Patrik D'Haeseleer
    posted to datamining method statistics by Yanno on 2006-02-01 11:50:36 as read along with 4 people and 1 group renatomilani okarsligil sesejun tabu Bioinformatics
  • Gini Coefficient: A New Way To Express Selectivity of Kinase Inhibitors against a Family of Kinases
    J. Med. Chem., Vol. 50, No. 23. (15 November 2007), pp. 5773-5779.
    by PP Graczyk
    posted to kinase method proteomics statistics by Yanno on 2008-01-04 17:46:05 as read along with 1 person daevans
  • A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays.
    J Biomol Screen, Vol. 4, No. 2. (1999), pp. 67-73.
    by JH Zhang, TD Chung, KR Oldenburg
    posted to method statistics by Yanno on 2006-01-27 14:00:42 as *** along with 1 person jxl
  • High-throughput kinase assays with protein substrates using fluorescent polymer superquenching.
    BMC Biotechnol, Vol. 5, No. 1. (31 May 2005)
    by F Rininsland, C Stankewicz, W Weatherford, D McBranch
    posted to assay fluorescent kinase method by Yanno on 2006-01-27 13:47:26 as read
  • A Bayesian truth serum for subjective data.
    Science, Vol. 306, No. 5695. (15 October 2004), pp. 462-466.
    by D Prelec
    posted to datamining method review statistics by Yanno on 2006-02-03 11:59:25 as ** along with 12 people and 4 groups quianominorleo klouie stefanherzog jrw garyfeng schaal Borelli ddahlem eibin proportional suizan SamMartin Glimcher_Lab ReadingLab NoncommutativeGeometry ACS-Basel
  • Amplification of complex gene libraries by emulsion PCR
    Nature Methods, Vol. 3, No. 7., pp. 545-550.
    by Richard Williams, Sergio G Peisajovich, Oliver J Miller, Shlomo Magdassi, Dan S Tawfik, Andrew D Griffiths
    posted to diagnostics hcs hts method molecularbiology by Yanno on 2006-08-29 10:07:15 as read along with 2 people and 2 groups jyuh dchughes G4ID Genetics-of-Gambling
  • Predicting aqueous solubility from structure
    Drug Discovery Today, Vol. 10, No. 4. (15 February 2005), pp. 289-295.
    by John S Delaney
    posted to chemoinformatics method review by Yanno on 2007-11-16 14:36:00 as read
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to method statistics by Yanno on 2007-12-18 10:49:36 as read along with 6 people kengg axelon ryanraaum heliopais mingzhi Ema
  • Alternative Statistical Parameter for High-Throughput Screening Assay Quality Assessment
    J Biomol Screen, Vol. 12, No. 2. (1 March 2007), pp. 229-234.
    by Yunxia Sui, Zhijin Wu
    posted to hts method statistics by Yanno on 2007-05-15 08:46:41 as read
  • Seeing is believing? A beginners' guide to practical pitfalls in image acquisition
    J. Cell Biol., Vol. 172, No. 1. (3 January 2006), pp. 9-18.
    by Alison J North
    posted to fluorescent method microscopy review by Yanno on 2006-03-06 09:12:16 as read along with 7 people and 1 group Ayest madhadron lmcf rodney emmahe electricsbm jonsta247 Kopelman_Group
  • Modification of Kolmogorov-Smirnov Test for DNA Content Data Analysis Through Distribution Alignment.
    Assay Drug Dev Technol (16 October 2007)
    by Shuguang Huang, Adeline A A Yeo, Shuyu Dan D Li
    posted to hcs hts method statistics by Yanno on 2007-11-12 17:27:55 as read
  • Kernel methods for in silico chemogenomics
    ArXiv e-prints, Vol. 709 (September 2007)
    by L Jacob, JP Vert
    posted to chemoinformatics datamining method ressource by Yanno on 2007-10-30 16:00:41 as read
  • High-content single-cell drug screening with phosphospecific flow cytometry.
    Nat Chem Biol, Vol. 4, No. 2. (February 2008), pp. 132-142.
    by PO Krutzik, JM Crane, MR Clutter, GP Nolan
    posted to drugdiscovery method screening statistics by Yanno on 2008-01-23 13:38:20 as read along with 2 people jyuh kengg
  • Simple bioseparations using self-cleaving elastin-like polypeptide tags
    Nature Methods, Vol. 2, No. 9. (02 August 2005), pp. 659-662.
    by Mahmoud R Banki, Liang Feng, David W Wood
    posted to method proteomics purification by Yanno on 2006-08-28 15:00:13 as read
  • A linguistic model for the rational design of antimicrobial peptides
    Nature, Vol. 443, No. 7113., pp. 867-869.
    by Christopher Loose, Kyle Jensen, Isidore Rigoutsos, Gregory Stephanopoulos
    posted to bioactive disease method naturalproducts peptide by Yanno on 2006-10-19 17:18:05 as read along with 7 people and 1 group loison okarsligil dayjm mtagaya madhadron pjkiley shabib Bioinformatics
  • High-throughput assays for promiscuous inhibitors.
    Nat Chem Biol, Vol. 1, No. 3. (August 2005), pp. 146-148.
    by BY Feng, A Shelat, TN Doman, RK Guy, BK Shoichet
    posted to drugdiscovery inhibitor method by Yanno on 2006-05-28 17:25:16 as read
  • Analysis of yeast protein kinases using protein chips.
    Nat Genet, Vol. 26, No. 3. (November 2000), pp. 283-289.
    by H Zhu, JF Klemic, S Chang, P Bertone, A Casamayor, KG Klemic, D Smith, M Gerstein, MA Reed, M Snyder
    posted to chip kinase method by Yanno on 2006-05-28 17:04:29 as read
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to cancer datamining method networks statistics by Yanno on 2006-06-09 13:02:09 as read along with 11 people srp33 jyuh kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk
  • Functional interrogation of the kinome using nucleotide acyl phosphates.
    Biochemistry, Vol. 46, No. 2. (16 January 2007), pp. 350-358.
    by MP Patricelli, AK Szardenings, M Liyanage, TK Nomanbhoy, M Wu, H Weissig, A Aban, D Chun, S Tanner, JW Kozarich
    posted to kinase method proteomics targetbeads by Yanno on 2007-11-12 12:21:06 as read
  • High-resolution functional proteomics by active-site peptide profiling.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4996-5001.
    by ES Okerberg, J Wu, B Zhang, B Samii, K Blackford, DT Winn, KR Shreder, JJ Burbaum, MP Patricelli
    posted to method proteomics targetbeads by Yanno on 2007-11-12 12:20:53 as read
  • High-throughput cloning and expression in recalcitrant bacteria
    Nat Meth, Vol. 4, No. 9. (2007), pp. 705-707.
    by Eric R Geertsma, Bert Poolman
    posted to method molecularbiology by Yanno on 2007-09-12 12:22:42 as read along with 2 people jyuh zwang
  • Mining Association Rules between Sets of Items in Large Databases
    (FebruaryJune--FebruaryAugust~ 1993), pp. 207-216.
    by Rakesh Agrawal, Tomasz Imielinski, Arun N Swami
    edited by Peter Buneman, Sushil Jajodia
    posted to datamining method by Yanno on 2007-11-22 12:11:12 as read along with 11 people radical bigga tetsus tvdbulck dolhani abonchen pollaeng amsantos imrchen conley gvdh
  • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
    Genome Biol, Vol. 6, No. 2. (2005)
    by SE Choe, M Boutros, AM Michelson, GM Church, MS Halfon
    posted to chip comparative_study method microarray by xwbcn on 2007-02-26 15:21:39 as ** along with 5 people and 1 group daforerog jeremymiller ccr ghattem waszak GeschwindLab
  • Prediction of plant microRNA targets.
    Cell, Vol. 110, No. 4. (23 August 2002), pp. 513-520.
    by MW Rhoades, BJ Reinhart, LP Lim, CB Burge, B Bartel, DP Bartel
    posted to arabidopsis comparative_study data_mining method mirna plants by xwbcn on 2007-07-01 17:13:13 as ** along with 1 person and 1 group cdawson GIG
  • Agrobacterium is not alone: gene transfer to plants by viruses and other bacteria.
    Trends Plant Sci, Vol. 11, No. 1. (January 2006), pp. 1-4.
    by SM Chung, M Vaidya, T Tzfira
    posted to agrobacterium bacteria gene method not plant review transfer tumefaciens virus by xico on 2006-03-19 19:54:52 as *** along with 1 group WetBiology
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