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Tag mammal [155 articles]

Recent papers classified by the tag mammal.
  • A protocol for constructing gene targeting vectors: generating knockout mice for the cadherin family and beyond
    Nat. Protocols, Vol. 3, No. 6. (May 2008), pp. 1056-1076.
    by Sen Wu, Guoxin Ying, Qiang Wu, Mario R Capecchi
    posted to mammal protocol target by zwang on 2008-07-04 03:36:02 as ** along with 1 person dchughes
  • Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel
    posted to mammal microrna network regulatory transcription by zwang on 2007-08-29 02:29:18 as * along with 12 people and 2 groups jfr andersbj rdiaz sebastien_vigneau ealloza bootsy cabbagezs rahulthadani heliopais ale maralena OriginalLurch Bioinformatics microRNA
  • Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
    Nat Meth, Vol. 4, No. 9. (2007), pp. 747-753.
    by Pierre-Alain Girod, Duc-Quang Nguyen, David Calabrese, Stefania Puttini, Melanie Grandjean, Danielle Martinet, Alexandre Regamey, Damien Saugy, Jacques S Beckmann, Philipp Bucher, Nicolas Mermod
    posted to expression gene genome-wide mammal prediction by zwang on 2007-08-31 16:22:46 as * along with 2 people sebastien_vigneau uz_labu_laimi
  • MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing.
    Mol Cell, Vol. 27, No. 1. (6 July 2007), pp. 91-105.
    by Andrew Grimson, Kyle Kai-How K Farh, Wendy K K Johnston, Philip Garrett-Engele, Lee P P Lim, David P P Bartel
    posted to mammal microrna prediction target by zwang on 2007-08-15 04:15:51 as ** along with 6 people and 1 group jfr andersbj bootsy heliopais fpattyn maralena microRNA
  • Mammalian sirtuins--emerging roles in physiology, aging, and calorie restriction
    Genes Dev., Vol. 20, No. 21. (1 November 2006), pp. 2913-2921.
    by Marcia C Haigis, Leonard P Guarente
    posted to aging longevity mammal mammalian sir2 sirtuin by zhlei on 2007-09-17 21:27:14 as **
  • The process of spermatogenesis in mammals.
    Biol Rev Camb Philos Soc, Vol. 37 (August 1962), pp. 343-377.
    by EC ROOSEN-RUNGE
    posted to mammal spermatogenesis by zhlei on 2005-10-31 02:34:11 as **
  • AUDITORY SYSTEM: A moving experience in the cochlea
    Nature Reviews Neuroscience, Vol. 6, No. 3. (01 March 2005), pp. 171-171.
    by Rachel Jones
    posted to auditory cochlea mammal review by yabadak on 2006-08-30 07:08:15 as **
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
    by P Khaitovich, I Hellmann, W Enard, K Nowick, M Leinweber, H Franz, G Weiss, M Lachmann, S Pääbo
    posted to transcriptome mammal human comparative_study co-expression by xwbcn on 2008-09-22 02:29:15 as ** along with 8 people and 2 groups balicea madhadron nickluscombe hdopazo djkt mikaelhuss JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
  • Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
    BMC Bioinformatics, Vol. 7 (04 July 2006), 330.
    by Seon-Young Kim, Yongsung Kim
    posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as ** along with 3 people heliopais jfr Ao_Li2007
  • Antisense transcription in the mammalian transcriptome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1564-1566.
    by S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, CC Yap, M Suzuki, J Kawai, H Suzuki, P Carninci, Y Hayashizaki, C Wells, M Frith, T Ravasi, KC Pang, J Hallinan, J Mattick, DA Hume, L Lipovich, S Batalov, PG Engström, Y Mizuno, MA Faghihi, A Sandelin, AM Chalk, S Mottagui-Tabar, Z Liang, B Lenhard, C Wahlestedt, , ,
    posted to antisense human_genome mammal sense by xwbcn on 2006-06-16 03:10:37 as *** along with 1 person olympos
  • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150.
    by X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
    posted to genome_alignment human human_genome mammal motif networks tf by xwbcn on 2007-05-11 09:54:09 as ** along with 4 people aprasad olympos rschulz bpcusack
  • The spatio-temporal organization of DNA replication sites is identical in primary, immortalized and transformed mammalian cells.
    J Cell Sci, Vol. 115, No. Pt 21. (1 November 2002), pp. 4037-4051.
    by DS Dimitrova, R Berezney
    posted to chromatin_organisation genome_organisation immortalised_cells lamin mammal replication spatio-temporal_dynamics by uz_labu_laimi on 2007-06-21 15:06:59 as **
  • Number and nuclear localisation of nucleoli in mammalian spermatocytes.
    Genetica, Vol. 121, No. 3. (July 2004), pp. 219-228.
    by S Berríos, R Fernández-Donoso, J Pincheira, J Page, M Manterola, MC Cerda
    posted to mammal nucleolus spermatocyte spermatogenesis by uz_labu_laimi on 2007-05-23 16:11:19 as ***
  • Pattern of activity of nucleolus organizers during spermatogenesis in mammals as analyzed by silver-staining
    Chromosoma, Vol. 71, No. 2. (1 January 1979), pp. 197-216.
    by FJ Hofgärtner, M Schmid, W Krone, Maria T Zenzes, W Engel
    posted to mammal nucleolus nucleolus_organiser spermatogenesis by uz_labu_laimi on 2007-05-23 14:52:58 as **
  • Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus
    Advances in Enzyme Regulation, Vol. 45, No. 1. (2005), pp. 17-26.
    by Ronald Berezney, Kishore S Malyavantham, Artem Pliss, Sambit Bhattacharya, Raj Acharya
    posted to chromatin_organisation computational_analysis genome_organisation mammal nucleus replication review spatio-temporal_dynamics by uz_labu_laimi on 2007-06-21 15:04:10 as **
  • Incorporating Uncertainty into Management Models for Marine Mammals
    Conservation Biology, Vol. 14, No. 5. (2000), pp. 1243-1252.
    by Barbara L Taylor, Paul R Wade, Douglas P De Master, Jay Barlow
    posted to conservation mammal marine by temde on 2006-10-24 13:45:02 as ***
  • Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130.
    by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier
    posted to mammal mitochondria senescence by stevanspringer on 2008-07-17 06:42:15 as ** along with 4 people and 1 group aprasad renatomilani smbe2008 rvosa FAB-lab
  • Requirement of CD9 on the Egg Plasma Membrane for Fertilization
    Science, Vol. 287, No. 5451. (14 January 2000), pp. 321-324.
    by Kenji Miyado, Gen Yamada, Shuichi Yamada, Hidetoshi Hasuwa, Yasuhiro Nakamura, Fuminori Ryu, Kentaro Suzuki, Kenichiro Kosai, Kimiko Inoue, Atsuo Ogura, Masaru Okabe, Eisuke Mekada
    posted to mammal by stevanspringer on 2005-03-10 06:01:13 as ** along with 1 group FAB-lab
  • Role of positive selection in the retention of duplicate genes in mammalian genomes
    PNAS, Vol. 103, No. 7. (14 February 2006), pp. 2232-2236.
    by Shin-Han Shiu, Jake K Byrnes, Runsun Pan, Peng Zhang, Wen-Hsiung Li
    posted to mammal by stevanspringer on 2006-02-24 01:12:22 as ** along with 2 people and 1 group ejeffery cmm FAB-lab
  • Loss of Egg Yolk Genes in Mammals and the Origin of Lactation and Placentation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e63.
    by David Brawand, Walter Wahli, Henrik Kaessmann
    posted to loss mammal teaching by stevanspringer on 2008-07-17 06:56:55 as ** along with 1 person bpcusack
  • The molecular basis of sperm-oocyte membrane interactions during mammalian fertilization.
    Hum Reprod Update, Vol. 8, No. 4. (g 2002), pp. 297-311.
    by JP Evans
    posted to mammal by stevanspringer on 2005-03-15 23:28:00 as ** along with 1 person and 3 groups dchughes FAB-lab G4ID Genetics-of-Gambling
  • The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes.
    Proc Natl Acad Sci U S A, Vol. 94, No. 24. (25 November 1997), pp. 12809-12816.
    by S Xie, J Green, JB Bixby, B Szafranska, JC DeMartini, S Hecht, RM Roberts
    posted to mammal by stevanspringer on 2006-03-01 05:27:19 as ** along with 1 group FAB-lab
  • Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution.
    PLoS ONE, Vol. 2 (2007)
    by M Kullberg, B Hallström, U Arnason, A Janke
    posted to est mammal phylogenetics phylogenomics phylogeny by stajich on 2007-09-04 19:00:30 as **
  • The evolution of Mammalian gene families.
    PLoS ONE, Vol. 1 (2006)
    by JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
    posted to evolution gene_family mammal by stajich on 2007-05-22 06:35:12 as read along with 1 person bpcusack
  • The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e135.
    by Carol A Edwards, Andrew J Mungall, Lucy Matthews, Edward Ryder, Dionne J Gray, Andrew J Pask, Geoffrey Shaw, Jennifer A Graves, Jane Rogers, Ian Dunham, Marilyn B Renfree, Anne C Ferguson-Smith
    posted to imprinting mammal mirna by stajich on 2008-06-26 07:08:15 as ** along with 3 people and 1 group djkt icq242500260 clearbluespring Berkeley Mycology
  • Mammalian Sperm Proteins Are Rapidly Evolving: Evidence of Positive Selection in Functionally Diverse Genes
    Mol Biol Evol, Vol. 19, No. 11. (1 November 2002), pp. 1973-1980.
    by Dara G Torgerson, Rob J Kulathinal, Rama S Singh
    posted to evolution human mammal molevoltestis mouse positive protein rapid sperm by skumagai on 2008-06-06 16:17:47 as read along with 2 people and 2 groups balicea dchughes G4ID Genetics-of-Gambling
  • Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 68-74.
    by L Duret, D Mouchiroud
    posted to expression intensity mammal molevoltestis mtation pattern rate selection substitution by skumagai on 2008-06-06 01:59:46 as read along with 1 person bjorns
  • Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection?
    Molecular biology and evolution, Vol. 16, No. 5. (May 1999), pp. 706-710.
    by AP Rooney, J Zhang
    posted to darwinian mammal molevoltestis positive rapid selection by skumagai on 2008-06-06 16:04:37 as read
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to alignment annotation conserved constraint evolution footprinting human mammal mammals no-tag prediction rate selection tfbs transcription turnover by samal on 2006-08-22 05:18:32 as ** along with 8 people and 2 groups indigoviolet dpollard nickluscombe olympos emptyhb bpcusack mariakmejia kcrawlik EisenLab EBI-regulation
  • PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes.
    Nucleic acids research, Vol. 35, No. Database issue. (January 2007)
    by JY Lee, I Yeh, JY Park, B Tian
    posted to database mammal polyadenylation by rschulz on 2008-04-10 10:41:11 as **
  • A census of mammalian imprinting.
    Trends Genet, Vol. 21, No. 8. (August 2005), pp. 457-465.
    by IM Morison, JP Ramsay, HG Spencer
    posted to census database epigenetics imprinting mammal otago review by rschulz on 2008-01-14 12:43:36 as read
  • Interspersed repeats and other mementos of transposable elements in mammalian genomes.
    Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 657-663.
    by AF Smit
    posted to elements genetic mammal transposable by rmj001 on 2005-01-19 09:48:08 as *** along with 4 people and 3 groups briann aprasad dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • The yeast homolog of mammalian ribosomal protein S30 is expressed from a duplicated gene without a ubiquitin-like protein fusion sequence. Evolutionary implications.
    J Biol Chem, Vol. 271, No. 23. (7 June 1996), pp. 13549-13555.
    by RT Baker, NA Williamson, RE Wettenhall
    posted to evolution fusion mammal ribosome s30 ubiquitin yeast by pombe on 2007-10-01 14:41:35 as **
  • Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns
    Genome Biology, Vol. 7 (20 December 2006), R120.
    by Manuela Sironi, Giorgia Menozzi, Giacomo P Comi, Matteo Cereda, Rachele Cagliani, Nereo Bresolin, Uberto Pozzoli
    posted to families fixation insertion intron mammal transposon by paulcartwright on 2008-03-26 12:39:41 as read along with 2 people and 3 groups dchughes FMoncini G4ID Genetics-of-Gambling BergmanLab
  • The delayed rise of present-day mammals
    Nature, Vol. 446, No. 7135., pp. 507-512.
    by Olaf RP Bininda-Emonds, Marcel Cardillo, Kate E Jones, Ross DE Macphee, Robin MD Beck, Richard Grenyer, Samantha A Price, Rutger A Vos, John L Gittleman, Andy Purvis
    posted to biology cretaceous evolution extinction mammal by nurban on 2007-03-29 14:50:23 as ** along with 4 people and 2 groups gjuggler rvosa dchughes dwildman G4ID Genetics-of-Gambling
  • Primary transcripts and expressions of mammal intergenic microRNAs detected by mapping ESTs to their flanking sequences.
    Mamm Genome (3 October 2006)
    by Jin Gu, Tao He, Yunfei Pei, Fei Li, Xiaowo Wang, Jing Zhang, Xuegong Zhang, Yanda Li
    posted to est expression intergenic mammal mapping microrna by maralena on 2008-02-21 08:05:04 as ** along with 1 person tardigrade
  • MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals.
    Mol Cell, Vol. 26, No. 5. (8 June 2007), pp. 753-767.
    by J Tsang, J Zhu, A van Oudenaarden
    posted to feedforward mammal microrna motif network by maralena on 2008-02-05 13:40:37 as ** along with 2 people and 1 group jfr heliopais microRNA
  • Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals
    Nature, Vol. aop, No. current. (27 February 2005)
    by Xiaohui Xie, Jun Lu, EJ Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander, Manolis Kellis
    posted to human mammal motif promoter regulation by maralena on 2008-02-12 14:55:54 as ** along with 22 people and 4 groups snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
  • Bio-informatic trends for the determination of miRNA-target interactions in mammals.
    DNA Cell Biol, Vol. 26, No. 5. (May 2007), pp. 353-360.
    by J Doran, WM Strauss
    posted to interaction mammal microrna target by maralena on 2008-02-12 14:33:49 as ** along with 1 person mtagaya
  • Genetic analysis of the mammalian cell death machinery.
    Trends Genet, Vol. 18, No. 3. (March 2002), pp. 142-149.
    by N Joza, G Kroemer, JM Penninger
    posted to apoptosis cell genetics mammal review by jclau on 2007-10-12 15:23:44 as ****
  • Mammalian mirtron genes.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 328-336.
    by E Berezikov, WJ Chung, J Willis, E Cuppen, EC Lai
    posted to 2007 mammal mirna by hpaces on 2008-07-16 08:00:59 as * along with 4 people dchughes cabbagezs ale tolot27
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to 2008 genome mammal by hpaces on 2008-05-11 14:49:05 as ** along with 9 people pbull Tominator neils fhsantanna gjuggler cabbagesofdoom ealloza natstreet lp2
  • Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774.
    by Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B Brown, Peter Bickel, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A Stone, Kate R Rosenbloom, James W Kent, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A Field, Richard A Moore, Carrie A Matthewson, Jacqueline E Schein, Marco A Marra, Stylianos E Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D Green, Arend Sidow
    posted to mammal encode comparative-analysis by dchughes to the group G4ID on 2007-09-17 13:08:35 as ** along with 7 people and 3 groups dpollard AaronDarling djkt ghattem Garamonfok gjuggler elfar Bioinformatics EisenLab Genetics-of-Gambling
  • Genomics, biogeography, and the diversification of placental mammals
    Proceedings of the National Academy of Sciences, Vol. 104, No. 36. (4 September 2007), pp. 14395-14400.
    by Derek E Wildman, Monica Uddin, Juan C Opazo, Guozhen Liu, Vincent Lefort, Stephane Guindon, Olivier Gascuel, Lawrence I Grossman, Roberto Romero, Morris Goodman
    posted to molecular-phylogenetics marsupial-mammal marsupial mammal evolutionary-genomics evolution by dchughes to the group G4ID on 2007-09-05 11:27:14 as ** along with 2 people and 1 group aprasad kluck Genetics-of-Gambling
  • Bats with hATs: Evidence for Recent DNA Transposon Activity in Genus Myotis
    Mol Biol Evol, Vol. 24, No. 3. (1 March 2007), pp. 632-639.
    by David A Ray, Heidi J Pagan, Michelle L Thompson, Richard D Stevens
    posted to dna-transposon mammal transposon by dchughes to the group G4ID on 2007-02-28 13:18:44 as ** along with 1 person and 1 group aprasad Genetics-of-Gambling
  • Molecules consolidate the placental mammal tree.
    Trends Ecol Evol, Vol. 19, No. 8. (1 August 2004), pp. 430-438.
    by MS Springer, MJ Stanhope, O Madsen, WW de Jong
    posted to molecular-phylogenetics mammal by dchughes to the group G4ID on 2006-08-01 19:40:39 as ** along with 1 person and 1 group aprasad Genetics-of-Gambling
  • Rates of Genome Evolution and Branching Order from Whole Genome Analysis
    Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1722-1730.
    by Gavin A Huttley, Matthew J Wakefield, Simon Easteal
    posted to molecular-phylogenetics mammal by dchughes to the group G4ID on 2007-08-02 19:54:27 as ** along with 2 people and 1 group operon xingxu Genetics-of-Gambling
  • Dissecting the mammalian genome - new insights into chromosomal evolution
    Trends in Genetics, Vol. 22, No. 6. (June 2006), pp. 297-301.
    by Terence J Robinson, Aurora Ruiz-Herrera, Lutz Froenicke
    posted to comparative-analysis mammal by dchughes to the group G4ID on 2006-06-06 11:29:47 as ** along with 1 group Genetics-of-Gambling
  • A novel class of mammalian-specific tailless retropseudogenes.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1911-1915.
    by J Schmitz, G Churakov, H Zischler, J Brosius
    posted to mammal retrotransposition by dchughes to the group G4ID on 2006-04-27 11:48:10 as ** along with 1 group Genetics-of-Gambling
  • SINEs, evolution and genome structure in the opossum.
    Gene (19 March 2007)
    by Wanjun Gu, David A A Ray, Jerilyn A A Walker, Erin W W Barnes, Andrew J J Gentles, Paul B B Samollow, Jerzy Jurka, Mark A A Batzer, David D D Pollock
    posted to sine retrotransposition marsupial-mammal marsupial mammal by dchughes to the group G4ID on 2007-08-06 09:43:37 as ** along with 1 person and 1 group N0131826 Genetics-of-Gambling
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