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Tag horizontal_transfer [27 articles]

Recent papers classified by the tag horizontal_transfer.
  • Horizontal gene transfer, genome innovation and evolution
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687.
    by Peter J Gogarten, Jeffrey P Townsend
    posted to a_exam evolution horizontal_transfer by ryang on 2006-01-12 23:41:48 as ** along with 6 people and 1 group matzke jwortman imouthesmp dbikard kinestetika karfunkel microbiology_nijmegen
  • Emergence of a new disease as a result of interspecific virulence gene transfer
    Nature Genetics, Vol. 38, No. 8. (09 July 2006), pp. 953-956.
    by Timothy L Friesen, Eva H Stukenbrock, Zhaohui Liu, Steven Meinhardt, Hua Ling, Justin D Faris, Jack B Rasmussen, Peter S Solomon, Bruce A Mcdonald, Richard P Oliver
    posted to candida horizontal_transfer virulence by radek on 2006-08-15 21:03:30 as **
  • Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer
    Science, Vol. 318, No. 5855. (30 November 2007), pp. 1449-1452.
    by Rotem Sorek, Yiwen Zhu, Christopher J Creevey, Pilar M Francino, Peer Bork, Edward M Rubin
    posted to genomics horizontal_transfer master by operon on 2008-02-20 00:23:20 as ** along with 6 people djkt bluto Katje emptyhb madhadron entropy
  • Mosaic bacterial chromosomes: a challenge en route to a tree of genomes.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 21, No. 2. (February 1999), pp. 99-104.
    by W Martin
    posted to horizontal_transfer master by operon on 2008-04-03 18:33:06 as **
  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer
    Genome Biology, Vol. 8 (02 February 2007), R16.
    by Sheila Podell, Terry Gaasterland
    posted to genomics prokaryote bioinformatics evolution horizontal_transfer phylogenetics by operon on 2007-07-26 16:59:58 as ***** along with 2 people eweaver karfunkel
  • DNA uptake in bacteria.
    Annu Rev Microbiol, Vol. 53 (1999), pp. 217-244.
    by D Dubnau
    posted to horizontal_transfer master by operon on 2008-04-13 16:58:16 as ** along with 2 people dayjm treangen
  • Evolutionary Genomics: Transdomain Gene Transfers
    Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936.
    by Seth R Bordenstein
    posted to phylogenetics horizontal_transfer genomics evolution doctorate bacteria by operon on 2008-10-22 13:12:52 as *** along with 4 people and 1 group skhadar mblwhoi zwang hpaces LabDros
  • Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract.
    BMC Evolutionary Biology, Vol. 7 (20 August 2007), 141.
    by Pierre Nicolas, Philippe Bessieres, Dusko S Ehrlich, Emmanuelle Maguin, Maarten van de Guchte
    posted to horizontal_transfer master prokaryote by operon on 2008-02-19 11:44:48 as **
  • Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns
    Microbiology, Vol. 154, No. 1. (1 January 2008), pp. 1-15.
    by Jesse R Zaneveld, Diana R Nemergut, Rob Knight
    posted to evolution horizontal_transfer master by operon on 2008-03-09 23:39:17 as *****
  • Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals.
    Proc Natl Acad Sci U S A, Vol. 104, No. 29. (17 July 2007), pp. 12046-12051.
    by O Piskurek, N Okada
    posted to genetics genomics horizontal_transfer phylogenetics by operon on 2008-02-21 13:57:12 as ** along with 1 person kiara
  • High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA).
    ISME J, Vol. 1, No. 5. (September 2007), pp. 453-467.
    by G Oregaard, SJ Sørensen
    posted to biodiversity biotechnology evolution horizontal_transfer by operon on 2007-12-14 10:04:49 as **
  • Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1657-1664.
    by Guillaume Blanc, Hiroyuki Ogata, Catherine Robert, Stephane Audic, Jean-Michel Claverie, Didier Raoult
    posted to evolution genomics horizontal_transfer by operon on 2007-12-01 22:13:11 as ** along with 1 person hpaces
  • Phylogenetic identification of lateral genetic transfer events.
    BMC Evol Biol, Vol. 6 (2006)
    by RG Beiko, N Hamilton
    posted to horizontal_transfer master phylogenetics prokaryote by operon on 2008-02-19 11:51:38 as ** along with 1 person karfunkel
  • Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study
    Molecular Phylogenetics and Evolution, Vol. 30, No. 1. (January 2004), pp. 243-250.
    by P Escobar-Paramo, A Sabbagh, P Darlu, O Pradillon, C Vaury, E Denamur, G Lecointre
    posted to horizontal_transfer phylogenetics prokaryote by operon on 2007-04-29 03:34:18 as ***
  • The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
    PLoS Biol, Vol. 3, No. 10. (October 2005)
    by F Ge, LS Wang, J Kim
    posted to ortholog horizontal_transfer genomics evolution by operon on 2008-10-15 15:19:30 as ** along with 3 people and 2 groups ana jmeppley AaronDarling structural_bioinformatics Bioinformatics
  • Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of -Proteobacteria
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 805-813.
    by Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
    posted to genomics horizontal_transfer master by operon on 2008-02-21 14:14:08 as ** along with 1 person Retchless
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
    posted to horizontal_transfer genomics drosophila doctorate bacteria arthropod by operon on 2008-10-30 17:21:39 as ** along with 8 people and 2 groups dpollard bluto zwang emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
  • The power of phylogenetic approaches to detect horizontally transferred genes
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Maria Poptsova, Peter J Gogarten
    posted to evolution horizontal_transfer phylogenetics prokaryote transposon genomics by operon on 2007-03-24 00:19:31 as ***** along with 1 person karfunkel
  • Tn7 elements: Engendering diversity from chromosomes to episomes.
    Plasmid (31 October 2008)
    by Adam R R Parks, Joseph E E Peters
    posted to transposon prokaryote horizontal_transfer evolution episome bacteria by operon on 2008-11-04 13:29:01 as **
  • The net of life: reconstructing the microbial phylogenetic network.
    Genome research, Vol. 15, No. 7. (July 2005), pp. 954-959.
    by V Kunin, L Goldovsky, N Darzentas, CA Ouzounis
    posted to visualization prokaryote phylogenetics horizontal_transfer genomics evolution bioinformatics bacteria by operon on 2008-11-14 21:23:00 as ** along with 1 person and 1 group druvus LabDros
  • Codon bias and base composition are poor indicators of horizontally transferred genes.
    Mol Biol Evol, Vol. 18, No. 3. (March 2001), pp. 404-412.
    by LB Koski, RA Morton, GB Golding
    posted to genomics codon_bias evolution genometrics horizontal_transfer phylogenetics prokaryote by operon on 2007-07-23 20:01:36 as ** along with 3 people and 2 groups ana jmeppley karfunkel structural_bioinformatics Bioinformatics
  • Contribution of Horizontally Acquired Genomic Islands to the Evolution of the Tubercle Bacilli
    Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1861-1871.
    by Jennifer Becq, Maria C Gutierrez, Vania Rosas-Magallanes, Jean Rauzier, Brigitte Gicquel, Olivier Neyrolles, Patrick Deschavanne
    posted to genomics horizontal_transfer master transposon by operon on 2008-02-29 15:18:49 as **
  • Wolbachia genome integrated in an insect chromosome: Evolution and fate of laterally transferred endosymbiont genes.
    Genome Res (11 December 2007)
    by Naruo Nikoh, Kohjiro Tanaka, Fukashi Shibata, Natsuko Kondo, Masahiro Hizume, Masakazu Shimada, Takema Fukatsu
    posted to evolution genomics horizontal_transfer master reduction symbiosis prokaryote by operon on 2008-01-25 22:11:23 as **
  • EVOLUTION: Passages Found Through Labyrinth of Bacterial Evolution
    Science, Vol. 301, No. 5634. (8 August 2003), pp. 745a-746.
    by Elizabeth Pennisi
    posted to 2003 bacteria bioinformatics evolution genome horizontal_transfer by hpaces on 2007-12-09 08:02:02 as **
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to 2008 bioinformatics horizontal_transfer human by hpaces on 2008-05-11 12:45:22 as read along with 19 people and 2 groups frohike waszak matthewsuderman jfr Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller jyuh skoch3 GeneGo Koch_Lab
  • Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
    Mol Biol Evol (24 December 2007), msm283.
    by Martin J Lercher, Csaba Pal
    posted to bacteria cis-regulatory horizontal_transfer by cisevol to the group cis-regulatory-evolution on 2008-07-12 06:35:02 as ** along with 4 people dquest cjeans marcio cambray
  • Horizontal gene transfer in eukaryotic evolution.
    Nature reviews. Genetics (1 July 2008)
    by Patrick J J Keeling, Jeffrey D D Palmer
    posted to horizontal_transfer by Anachff on 2008-11-11 00:41:11 as ** along with 2 people dakelley bootsy
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