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Tag homology [172 articles]

Recent papers classified by the tag homology.
  • The developmental genetics of homology
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 473-479.
    by Günter P Wagner
    posted to evolution genetics homology by zwang on 2007-06-14 05:25:21 as *** along with 3 people and 2 groups balicea skhadar dchughes G4ID Genetics-of-Gambling
  • Using Phylogeny to Improve Genome-Wide Distant Homology Recognition
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e3.
    by Sanne Abeln, Carlo Teubner, Charlotte M Deane
    posted to genome-wide homology phylogeny by zwang on 2007-04-12 10:35:42 as ****
  • Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.
    Bioinformatics, Vol. 17, No. 9. (September 2001), pp. 791-802.
    by K Horimoto, S Fukuchi, K Mori
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:22 as **
  • Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes.
    Nucleic Acids Res, Vol. 27, No. 14. (15 July 1999), pp. 2981-2989.
    by AA Mironov, EV Koonin, MA Roytberg, MS Gelfand
    posted to evolution homology orthology paralogy transcription by ziquje on 2005-05-09 21:40:22 as ** along with 1 person kaarsinogen
  • Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes.
    Plant Physiol, Vol. 135, No. 1. (May 2004), pp. 459-470.
    by YQ Gu, D Coleman-Derr, X Kong, OD Anderson
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:35 as *****
  • The balance of driving forces during genome evolution in prokaryotes.
    Genome Res, Vol. 13, No. 7. (July 2003), pp. 1589-1594.
    by V Kunin, CA Ouzounis
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 21:33:35 as ***** along with 2 people kaarsinogen evodeva
  • Beyond complete genomes: from sequence to structure and function.
    Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 355-363.
    by EV Koonin, RL Tatusov, MY Galperin
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:52 as *****
  • Multiple sequence alignment in phylogenetic analysis.
    Mol Phylogenet Evol, Vol. 16, No. 3. (September 2000), pp. 317-330.
    by A Phillips, D Janies, W Wheeler
    posted to alignments and homology pairwise by ziquje on 2005-05-16 16:50:18 as ** along with 1 person stormybriggs
  • Comparing bacterial genomes through conservation profiles.
    Genome Res, Vol. 13, No. 5. (May 2003), pp. 991-998.
    by MJ Martin, J Herrero, A Mateos, J Dopazo
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:55:00 as *****
  • Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
    Genome Res, Vol. 11, No. 3. (March 2001), pp. 356-372.
    by YI Wolf, IB Rogozin, AS Kondrashov, EV Koonin
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:51:56 as ***** along with 2 people and 2 groups barry eweaver structural_bioinformatics Bioinformatics
  • Evolutionary analysis by whole-genome comparisons.
    J Bacteriol, Vol. 184, No. 8. (April 2002), pp. 2260-2272.
    by AK Bansal, TE Meyer
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:54:43 as ** along with 1 person bayesian
  • Genome sequence comparison and scenarios for gene rearrangements: a test case.
    Genomics, Vol. 30, No. 2. (20 November 1995), pp. 299-311.
    by S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:55:09 as *****
  • Measuring genome evolution.
    Proc Natl Acad Sci U S A, Vol. 95, No. 11. (26 May 1998), pp. 5849-5856.
    by MA Huynen, P Bork
    posted to evolution homology orthology paralogy by ziquje on 2005-05-09 20:38:11 as ***** along with 4 people greger_halltorp operon kaarsinogen ruvido
  • I want a new drug: G-protein-coupled receptors in drug development.
    Drug Discov Today, Vol. 11, No. 11-12. (June 2006), pp. 481-493.
    by S Schlyer, R Horuk
    posted to specificity silico modeling in homology gpcr by zimbo1 on 2008-10-21 11:14:15 as ** along with 1 person and 1 group xdeupi LabCompMed
  • Kinases, homology models, and high throughput docking.
    J Med Chem, Vol. 46, No. 22. (23 October 2003), pp. 4638-4647.
    by DJ Diller, R Li
    posted to models kinase homology by tjimenez on 2007-01-12 13:19:42 as **
  • Structure selection for protein kinase docking and virtual screening: homology models or crystal structures?
    Curr Protein Pept Sci, Vol. 7, No. 5. (October 2006), pp. 437-457.
    by WM Rockey, AH Elcock
    posted to models kinase homology by tjimenez on 2007-01-12 12:38:05 as **
  • Screening drug-like compounds by docking to homology models: a systematic study.
    J Chem Inf Model, Vol. 46, No. 1. (b 2006), pp. 365-379.
    by V Kairys, MX Fernandes, MK Gilson
    posted to models homology docking by tjimenez on 2007-01-12 13:31:39 as **
  • Protein homology detection by HMM-HMM comparison.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 951-960.
    by J Söding
    posted to hmm homology markov methods modeling by tharris on 2008-06-20 17:40:37 as ** along with 3 people chad_davis msierk granujilla
  • Functional Lateralization of Face, Hand, and Trunk Representation in Anatomically Defined Human Somatosensory Areas
    Cereb. Cortex (27 March 2008), bhn039.
    by SB Eickhoff, C Grefkes, GR Fink, K Zilles
    posted to homology ipsilateral map si sii somatosensory by svbcrypto on 2008-06-17 20:01:56 as **
  • The Global Landscape of Sequence Diversity
    Genome Biology, Vol. 8 (08 November 2007), R238.
    by Jose M Peregrin-Alvarez, John Parkinson
    posted to bioinformatics homology sequence_analysis by skhadar on 2008-02-27 07:02:13 as ** along with 4 people gpalidwor cjeans hpaces ale
  • Identification of homology in protein structure classification
    Nat Struct Mol Biol, Vol. 8, No. 11. (November 2001), pp. 953-957.
    by S Dietmann, L Holm
    posted to classification comparison homology protein structure by siebertm on 2007-05-18 22:26:42 as *
  • Identifying metabolic enzymes with multiple types of association evidence.
    BMC Bioinformatics, Vol. 7 (2006)
    by P Kharchenko, L Chen, Y Freund, D Vitkup, GM Church
    posted to association context distribution enzyme evidence functional gene genome homology hypergeometric metabolic missing network problem sequence by shung on 2008-01-05 21:05:49 as read along with 2 people JeremyZucker koller
  • Improper actions and higher connectivity at infinity
    (2000)
    by K Brown, J Meier
    posted to connectivity group-theory homology stabilizers by Scis0000002 on 2008-04-25 19:37:55 as **
  • Spatial Representation and Reasoning in Artificial Intelligence
    Spatial and Temporal Reasoning (1997), pp. 5-41.
    by Laure Vieu
    posted to connectivity embedding hierarchies homology inclusions merology regions scale-spaces self-similarity zooming by Scis0000002 on 2008-04-25 23:08:32 as **
  • Q-Analysis of Fractal Sets
    by Ay S Erzan
    posted to algebraic-geometry algebraic-topology complexes fractality homology homotopy non-polyhedral q-analysis simplexes topological-analysis topology by Scis0000002 on 2007-07-14 14:31:45 as **
  • Measuring and Localing Homology Classes
    ArXiv e-prints, Vol. 705 (May 2007)
    by D Freedman, C Chen
    posted to cycles equivalence-classes homology homology-classes homology-groups lattice-of-homology-classes topological-spaces by Scis0000002 on 2008-04-25 19:50:24 as **
  • A Homology Theory for Hybrid Systems: Hybrid Homology
    Hybrid Systems: Computation and Control (2005), pp. 86-102.
    by Aaron D Ames, Shankar Sastry
    posted to category-of-dynamical-systems category-of-systems homology homotopies hybrid-systems by Scis0000002 on 2007-07-10 14:49:49 as **
  • The homology of real subspace arrangements
    ArXiv Mathematics e-prints (October 2006)
    by EM Rains
    posted to arrangements bundles complexes homology lattice-of-subspaces order-complexes simplicial-complexes subspaces by Scis0000002 on 2008-05-18 14:47:04 as **
  • Homology of Higher Dimensional Automata
    (1992), pp. 254-268.
    by Eric Goubault, Thomas P Jensen
    posted to hda homology transition-system by scis0000001 on 2006-12-16 14:16:24 as **
  • Fast Khovanov Homology Computations
    ArXiv Mathematics e-prints (June 2006)
    by D Bar-Natan
    posted to computation homology by scis0000001 on 2007-05-10 10:55:37 as **
  • Higher dimensional automata revisited
    Mathematical Structures in Computer Science, Vol. 10, No. 4. (2000), pp. 525-548.
    by Vaughan R Pratt
    posted to topology state-space information-system homotopy homology hda hd geometry event-structures event-space concurrency chu-space category-theory algebraic-domains algebraic by scis0000001 on 2007-01-07 13:55:35 as ** along with 1 person jrw
  • Combining pairwise sequence similarity and support vector machines for remote protein homology detection
    (2002)
    by L Li, W Noble
    posted to homology sequence similarity svm by scis0000001 on 2006-08-27 16:08:20 as ** along with 1 person bioinfo
  • Noncommutative Topological Quantum Field Theory-Noncommutative Floer Homology
    (1 Oct 2005)
    by IP Zois
    posted to homology noncommutative tqft by scis0000001 on 2006-09-19 15:05:55 as **
  • When is homology not homology?
    Curr Opin Genet Dev, Vol. 8, No. 6. (December 1998), pp. 675-680.
    by GA Wray, E Abouheif
    posted to homology by sangeetha on 2007-03-20 09:36:28 as ** along with 2 people and 2 groups anatiferous neetiitr Bioinformatics insilicodrug
  • Homology-based modelling of targets for rational drug design.
    Mini Rev Med Chem, Vol. 4, No. 7. (September 2004), pp. 793-804.
    by H Wieman, K Tøndel, E Anderssen, F Drabløs
    posted to based design drug homology by sangeetha on 2006-01-25 09:34:46 as ** along with 2 groups Bioinformatics insilicodrug
  • Improving the specificity of high-throughput ortholog prediction.
    BMC Bioinformatics, Vol. 7, No. 1. (28 May 2006)
    by Debra L Fulton, Yvonne Y Li, Matthew R Laird, Benjamin G Horsman, Fiona M Roche, Fiona S Brinkman
    posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics by rvosa on 2008-08-08 07:17:36 as ** along with 4 people and 2 groups operon indigoviolet kaspermunch cerca Bioinformatics EisenLab
  • BranchClust: A phylogenetic algorithm for selecting gene families
    BMC Bioinformatics, Vol. 8 (10 April 2007), 120.
    by Maria S Poptsova, Peter J Gogarten
    posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa on 2008-08-08 07:02:46 as ** along with 2 people and 2 groups dandaman stajich FAB-lab Berkeley Mycology
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to algorithms amino-acid animals data-mining genetics genome hominidae homology humans mammals methods phylogenomics primates proteins rna sequence vertebrates by rvosa on 2008-02-01 11:04:06 as ** along with 16 people and 3 groups jo_davies tmmurali balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Berkeley Mycology
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to chapter homology ppi by ruvido on 2008-04-09 17:31:01 as ** along with 10 people and 2 groups baaden jwm bicko chad_davis dullhunk dgront drastic Evangelia higueruelo timg Radiation_Damage Stressosome
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to analysis graph homology interactions network power regulation by royerloic on 2008-07-16 23:43:52 as read along with 20 people and 2 groups yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Berkeley Mycology OPIG
  • Probing ligand binding modes of human cytochrome P450 2J2 by homology modeling, molecular dynamics simulation, and flexible molecular docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Weihua Li, Yun Tang, Hong Liu, Jiagao Cheng, Weiliang Zhu, Hualiang Jiang
    posted to homology ligand md by RamuAnandakrishnan on 2007-11-15 19:16:26 as **
  • Finding motifs using random projections
    (2001), pp. 69-76.
    by Jeremy Buhler, Martin Tompa
    posted to homology qualifier by RamuAnandakrishnan on 2007-10-16 00:00:20 as ** along with 2 people nedwards lptolik
  • Efficient large-scale sequence comparison by locality-sensitive hashing
    Bioinformatics, Vol. 17, No. 5. (1 May 2001), pp. 419-428.
    by Jeremy Buhler
    posted to homology qualifier by RamuAnandakrishnan on 2007-10-15 23:55:55 as ** along with 1 person nedwards
  • SVM-HUSTLE an iterative semi-supervised machine learning approach for pairwise protein remote homology detection
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 783-790.
    by Shah, R Anuj, Oehmen, S Christopher, Webb-Robertson, Bobbie-Jo
    posted to svm semi-supervised remote protein nazanin homology function by ptrobajo on 2008-09-15 20:25:24 as **
  • Statistical distributions of optimal global alignment scores of random protein sequences
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Hongxia Pang, Jiaowei Tang, Su S Chen, Shiheng Tao
    posted to alignment bioinformatics evolution homology sequence by pansapiens on 2006-06-09 07:45:16 as **
  • Application of latent semantic analysis to protein remote homology detection.
    Bioinformatics (29 November 2005)
    by Qi-Wen W Dong, Xiao-Long L Wang, Lei Lin
    posted to homology machine_learning protein sequence svm by pansapiens on 2005-12-02 00:24:47 as **
  • notes Quantification of the variation in percentage identity for protein sequence alignments
    BMC Bioinformatics, Vol. 7 (19 September 2006), 415.
    by Ps G Raghava, Geoffrey J Barton
    posted to alignment homology protein sequence by pansapiens on 2006-09-23 02:51:28 as *** along with 5 people and 1 group bicko dpollard rabio medic0747 sujaikumar EisenLab
  • Isolation of cDNAs encoding the Drosophila GAGA transcription factor.
    Mol Cell Biol, Vol. 13, No. 12. (December 1993), pp. 7961-7970.
    by WC Soeller, CE Oh, TB Kornberg
    posted to tramtrack homology gaga drosophila by pallacinka on 2007-01-21 21:31:26 as **
  • LineUp: statistical detection of chromosomal homology with application to plant comparative genomics.
    Genome research, Vol. 13, No. 5. (May 2003), pp. 999-1010.
    by S Hampson, A McLysaght, B Gaut, P Baldi
    posted to software ortholog homology bioinformatics by operon on 2008-11-11 16:29:39 as ** along with 2 people and 1 group druvus Neeperando LabDros
  • BOV - a web-based BLAST output visualization tool
    BMC Genomics, Vol. 9 (15 September 2008), 414.
    by Rajesh Gollapudi, Kashi Revanna, Chris Hemmerich, Sarah Schaack, Qunfeng Dong
    posted to software similarity homology bioinformatics by operon on 2008-09-17 16:15:40 as ** along with 4 people and 1 group jyuh natstreet druvus cisevol BergmanLab
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