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Tag hgt [109 articles]

Recent papers classified by the tag hgt.
  • Direct Visualization of Horizontal Gene Transfer
    Science, Vol. 319, No. 5869. (14 March 2008), pp. 1533-1536.
    by Ana Babic, Ariel B Lindner, Marin Vulic, Eric J Stewart, Miroslav Radman
    posted to evolution hgt by zwang on 2008-04-12 13:29:57 as ** along with 4 people madhadron niallhaslam melting dbikard
  • Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
    Environmental Microbiology, Vol. 6, No. 1. (2004), pp. 19-34.
    by Purificacion Lopez-Garcia, Celine Brochier, David Moreira, Francisco Rodriguez-Valera
    posted to antarctic archaea crens deep_ant hgt by vrich on 2008-05-19 22:27:18 as ** along with 1 person jmeppley
  • Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
    Nature Genetics, Vol. 37, No. 12. (20 November 2005), pp. 1372-1375.
    by Csaba Pál, Balázs Papp, Martin J Lercher
    posted to bacteria hgt network protein by tny on 2005-12-13 10:22:14 as ** along with 3 people and 1 group icases knaseanka michaelbarton TNT
  • Prokaryotic evolution in light of gene transfer.
    Mol Biol Evol, Vol. 19, No. 12. (December 2002), pp. 2226-2238.
    by JP Gogarten, WF Doolittle, JG Lawrence
    posted to bioinfpdl hgt phylogenetics by Tingting on 2008-05-20 10:32:38 as ** along with 2 people jmeppley AaronDarling
  • Estimating the extent of horizontal gene transfer in metagenomic sequences
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Javier Tamames, Andres Moya
    posted to bioinformatics gene hgt horizontal metagenomics transfer by neils on 2008-03-25 01:45:26 as ** along with 1 person karfunkel
  • Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
    Nucl. Acids Res. (23 October 2008), gkn668.
    by Eugene V Koonin, Yuri I Wolf
    posted to review phylogeny network hgt genomics evolution bacteria archaea by neils on 2008-10-28 23:03:57 as ** along with 1 person aramata
  • Massive Horizontal Gene Transfer in Bdelloid Rotifers
    Science, Vol. 320, No. 5880. (30 May 2008), pp. 1210-1213.
    by Eugene A Gladyshev, Matthew Meselson, Irina R Arkhipova
    posted to bdelloid evolution hgt hypothesis red-queen sex evolution-of-sex by mjoach on 2008-06-03 20:31:20 as **** along with 3 people mblwhoi biomcgary bpcusack
  • Evidence against the selfish operon theory
    Trends in Genetics, Vol. 20, No. 6. (1 June 2004), pp. 232-234.
    by Csaba Pal, Laurence D Hurst
    posted to evolution grn hgt modularity operons selfish gene-networks gene-regulation by mjoach on 2008-06-02 13:18:42 as **** along with 1 person rabu
  • Selfish Operons: Horizontal Transfer May Drive the Evolution of Gene Clusters
    Genetics, Vol. 143, No. 4. (1 August 1996), pp. 1843-1860.
    by JG Lawrence, JR Roth
    posted to evolution grn hgt modularity operons selfish gene-networks gene-regulation by mjoach on 2008-06-02 13:09:15 as **** along with 1 person AaronDarling
  • Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
    Genome Biology, Vol. 9, No. 1. (2008)
    by Nora Khaldi, Jerome Collemare, Marc H Lebrun, Kenneth Wolfe
    posted to fungi hgt by michC on 2008-01-31 15:08:39 as *** along with 2 people and 1 group stajich biomcgary Berkeley Mycology
  • Genomic Islands and the Ecology and Evolution of Prochlorococcus
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1768-1770.
    by Maureen L Coleman, Matthew B Sullivan, Adam C Martiny, Claudia Steglich, Kerrie Barry, Edward F Delong, Sallie W Chisholm
    posted to hgt by michC on 2007-05-16 19:14:50 as *** along with 7 people and 4 groups jmeppley Stenuite bluto jdelcampo cckan beatrizfernandez jlgreen African_Lakes_Limnology Microbial-Ecology Green Lab iSEEM
  • Horizontal gene transfer, genome innovation and evolution
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687.
    by Peter J Gogarten, Jeffrey P Townsend
    posted to hgt by matzke on 2005-09-08 04:23:40 as ** along with 6 people and 1 group jwortman imouthesmp ryang dbikard kinestetika karfunkel microbiology_nijmegen
  • Base compositional structure of genomes
    Genomics, Vol. 13, No. 4. (August 1992), pp. 1056-1064.
    by James W Fickett, David C Torney, David R Wolf
    posted to hgt by karfunkel on 2008-01-11 14:23:15 as **
  • STUDYING PLASMID HORIZONTAL TRANSFER IN SITU: A CRITICAL REVIEW
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 700-710.
    by Soren J Sorensen, Mark Bailey, Lars H Hansen, Niels Kroer, Stefan Wuertz
    posted to hgt by karfunkel on 2008-05-29 14:29:16 as ** along with 1 person and 1 group vwchan beta
  • Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
    Genome Res., Vol. 9, No. 7. (1 July 1999), pp. 608-628.
    by Kira S Makarova, L Aravind, Michael Y Galperin, Nick V Grishin, Roman L Tatusov, Yuri I Wolf, Eugene V Koonin
    posted to hgt by karfunkel on 2008-04-10 14:50:00 as ** along with 1 person operon
  • Phylogenetic identification of lateral genetic transfer events.
    BMC Evol Biol, Vol. 6 (2006)
    by RG Beiko, N Hamilton
    posted to hgt by karfunkel on 2008-04-21 13:52:38 as ** along with 1 person operon
  • Transformation Proteins and DNA Uptake Localize to the Cell Poles in Bacillus subtilis
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 59-71.
    by Jeanette Hahn, Berenike Maier, Bert J Haijema, Michael Sheetz, David Dubnau
    posted to hgt by karfunkel on 2008-06-24 09:51:27 as ** along with 1 person treangen
  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer
    Genome Biology, Vol. 8 (02 February 2007), R16.
    by Sheila Podell, Terry Gaasterland
    posted to hgt by karfunkel on 2008-01-11 12:07:44 as ** along with 2 people operon eweaver
  • Microbe-induced cytoplasmic incompatibility as a mechanism for introducing transgenes into arthropod populations
    Insect Molecular Biology, Vol. 8, No. 2. (1999), pp. 243-255.
    by M Turelli, AA Hoffmann
    posted to hgt by karfunkel on 2008-06-27 13:15:47 as **
  • MOBILE GENETIC ELEMENTS: THE AGENTS OF OPEN SOURCE EVOLUTION
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 722-732.
    by Laura S Frost, Raphael Leplae, Anne O Summers, Ariane Toussaint
    posted to hgt by karfunkel on 2008-05-29 14:26:39 as ** along with 2 people dakelley cdallett
  • Genes from Nine Genomes Are Separated into Their Organisms in the Dinucleotide Composition Space
    DNA Res, Vol. 5, No. 5. (1 January 1998), pp. 251-259.
    by Hiroshi Nakashima, Motonori Ota, Ken Nishikawa, Tatsuo Ooi
    posted to hgt by karfunkel on 2008-01-11 12:57:52 as ** along with 1 person bluto
  • Mobile DNA in obligate intracellular bacteria
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 688-699.
    by Seth R Bordenstein, William S Reznikoff
    posted to hgt by karfunkel on 2008-05-29 14:25:09 as ** along with 1 person operon
  • Pervasive properties of the genomic signature
    BMC Genomics, Vol. 3, No. 1. (2002)
    by Robert Jernigan, Robert Baran
    posted to hgt by karfunkel on 2008-01-11 14:19:20 as **
  • A new computational method for the detection of horizontal gene transfer events.
    Nucleic Acids Res, Vol. 33, No. 3. (2005), pp. 922-933.
    by A Tsirigos, I Rigoutsos
    posted to hgt by karfunkel on 2008-01-11 12:00:25 as ** along with 1 person and 1 group vwchan beta
  • The power of phylogenetic approaches to detect horizontally transferred genes
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Maria Poptsova, Peter J Gogarten
    posted to hgt by karfunkel on 2008-01-14 14:30:30 as ** along with 1 person operon
  • Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 517-522.
    by Daniel Dalevi, Devdatt Dubhashi, Malte Hermansson
    posted to hgt by karfunkel on 2008-01-11 12:34:57 as ** along with 1 person Ayest
  • HORIZONTAL GENE TRANSFER: A gift from afar...
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 668-668.
    by David O'Connell
    posted to hgt by karfunkel on 2008-05-29 14:30:41 as **
  • Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.
    Nucleic Acids Res, Vol. 28, No. 3. (1 February 2000), pp. 706-709.
    by P Worning, LJ Jensen, KE Nelson, S Brunak, DW Ussery
    posted to hgt by karfunkel on 2008-04-10 15:03:00 as ** along with 1 person larsjuhljensen
  • Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
    PLoS Comput Biol, Vol. 1, No. 6. (11 November 2005)
    by Rajeev K K Azad, Jeffrey G G Lawrence
    posted to hgt by karfunkel on 2008-01-11 12:10:47 as ** along with 3 people and 5 groups kaspermunch neveaire vwchan Biostatistics Computational-Genomics Bioinformatics Neuroscience beta
  • RE-EVALUATING PROKARYOTIC SPECIES
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 733-739.
    by Dirk Gevers, Frederick M Cohan, Jeffrey G Lawrence, Brian G Spratt, Tom Coenye, Edward J Feil, Erko Stackebrandt, Yves V de Peer, Peter Vandamme, Fabiano L Thompson, Jean Swings
    posted to hgt by karfunkel on 2008-05-29 14:34:04 as ** along with 1 person jmeppley
  • Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer.
    Proc Natl Acad Sci U S A, Vol. 102, No. 26. (28 June 2005), pp. 9170-9175.
    by D Schlieper, MA Oliva, JM Andreu, J Löwe
    posted to hgt by karfunkel on 2008-05-30 09:41:35 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Host genome surveillance for retrotransposons by transposon-derived proteins
    Nature (19 December 2007)
    by Hugh P Cam, Ken-Ichi Noma, Hirotaka Ebina, Henry L Levin, Shiv IS Grewal
    posted to hgt by karfunkel on 2008-06-27 11:55:31 as ** along with 7 people and 1 group operon sebastien_vigneau timflutre stajich biomcgary rschulz bpcusack Berkeley Mycology
  • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    Genome Biology, Vol. 2, No. 4. (2001), pp. research0010.1-research0010.13.
    by Robin Knight, Stephen Freeland, Laura Landweber
    posted to hgt by karfunkel on 2008-01-11 13:54:25 as ** along with 2 people nagendraproj nagendranow
  • The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process
    Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2049-2057.
    by Comas, Inaki, Moya, Andres, Azad, K Rajeev, Lawrence, G Jeffrey, Gonzalez-Candelas, Fernando
    posted to hgt by karfunkel on 2008-01-11 12:16:49 as **
  • Isochores merit the prefix `iso'
    Computational Biology and Chemistry, Vol. 27, No. 1. (February 2003), pp. 5-10.
    by Wentian Li, Pedro Bernaola-Galvan, Pedro Carpena, Jose L Oliver
    posted to hgt by karfunkel on 2008-01-11 14:26:51 as **
  • Lateral gene transfer in eukaryotes
    Cellular and Molecular Life Sciences (CMLS), Vol. 62, No. 11. (1 June 2005), pp. 1182-1197.
    by JO Andersson
    posted to hgt by karfunkel on 2008-01-14 13:54:02 as **
  • On surrogate methods for detecting lateral gene transfer.
    FEMS Microbiol Lett, Vol. 201, No. 2. (24 July 2001), pp. 187-191.
    by MA Ragan
    posted to amelioration hgt by karfunkel on 2008-01-28 12:34:07 as ** along with 1 person treangen
  • Biology's next revolution
    Nature, Vol. 445, No. 7126. (25 January 2007), pp. 369-369.
    by Nigel Goldenfeld, Carl Woese
    posted to hgt by karfunkel on 2007-08-23 10:44:27 as ** along with 4 people and 8 groups kinestetika kehan mattjb jmrivort microbiology_nijmegen biodiversity_conservation Bioinformatics ComplexAdaptiveSystems DSTO-CAS G-quadruplex Supramolecular GrassBase
  • Gene transfer: gene swapping craze reaches eukaryotes.
    Curr Biol, Vol. 13, No. 2. (21 January 2003)
    by JP Gogarten
    posted to hgt by karfunkel on 2008-01-14 14:19:41 as ** along with 1 person and 1 group vwchan beta
  • Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.
    Nucleic acids research, Vol. 8, No. 9. (10 May 1980), pp. 1893-1912.
    by R Grantham, C Gautier, M Gouy
    posted to hgt by karfunkel on 2008-06-29 16:20:45 as **
  • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    Journal of Molecular Biology, Vol. 151, No. 3. (25 September 1981), pp. 389-409.
    by Toshimichi Ikemura
    posted to hgt by karfunkel on 2008-06-29 16:32:00 as ** along with 1 person operon
  • How to Interpret an Anonymous Bacterial Genome: Machine Learning Approach to Gene Identification
    Genome Res., Vol. 8, No. 11. (1 November 1998), pp. 1154-1171.
    by William S Hayes, Mark Borodovsky
    posted to hgt by karfunkel on 2008-04-10 14:00:40 as ** along with 1 person wenhan
  • Strand compositional asymmetry in bacterial and large viral genomes
    Proceedings of the National Academy of Sciences, Vol. 95, No. 7. (31 March 1998), pp. 3720-3725.
    by Jan Mrazek, Samuel Karlin
    posted to hgt by karfunkel on 2008-01-11 14:31:48 as ** along with 1 person and 1 group azazello WeitzGroup
  • What Drives Codon Choices in Human Genes?
    Journal of Molecular Biology, Vol. 262, No. 4. (4 October 1996), pp. 459-472.
    by Samuel Karlin, Jan Mrazek
    posted to hgt by karfunkel on 2008-06-29 17:06:20 as ** along with 2 people nagendraproj bpcusack
  • Molecular archaeology of the Escherichia coli genome
    PNAS, Vol. 95, No. 16. (4 August 1998), pp. 9413-9417.
    by Jeffrey G Lawrence, Howard Ochman
    posted to amelioration gc hgt by karfunkel on 2007-08-15 14:52:43 as **
  • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
    Nature, Vol. 399, No. 6734. (27 May 1999), pp. 323-329.
    by KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, EK Hickey, JD Peterson, WC Nelson, KA Ketchum, L McDonald, TR Utterback, JA Malek, KD Linher, MM Garrett, AM Stewart, MD Cotton, MS Pratt, CA Phillips, D Richardson, J Heidelberg, GG Sutton, RD Fleischmann, JA Eisen, O White, SL Salzberg, HO Smith, JC Venter, CM Fraser
    posted to hgt by karfunkel on 2008-04-10 14:58:29 as ** along with 2 people and 2 groups ana jmeppley structural_bioinformatics Bioinformatics
  • Limitations of compositional approach to identifying horizontally transferred genes.
    J Mol Evol, Vol. 53, No. 3. (September 2001), pp. 244-250.
    by B Wang
    posted to hgt by karfunkel on 2007-08-17 11:47:38 as ** along with 1 person jmeppley
  • Dinucleotide relative abundance extremes: a genomic signature.
    Trends in genetics : TIG, Vol. 11, No. 7. (July 1995), pp. 283-290.
    by S Karlin, C Burge
    posted to hgt by karfunkel on 2008-06-29 21:55:22 as **
  • Wolbachia variability and host effects on crossing type in Culex mosquitoes
    Nature, Vol. 436, No. 7048. (July 2005), pp. 257-260.
    by Steven P Sinkins, Thomas Walker, Amy R Lynd, Andrew R Steven, Ben L Makepeace, Charles, Julian Parkhill
    posted to hgt by karfunkel on 2008-06-27 12:56:53 as ** along with 1 person operon
  • The reach of the genome signature in prokaryotes
    BMC Evolutionary Biology, Vol. 6 (13 October 2006), 84.
    by Mark WJ van Passel, Eiko E Kuramae, Angela CM Luyf, Aldert Bart, Teun Boekhout
    posted to hgt by karfunkel on 2008-01-11 13:51:12 as ** along with 2 people operon gelack
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