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Tag haplotypes [57 articles]

Recent papers classified by the tag haplotypes.
  • Modeling and E-M estimation of haplotype-specific relative risks from genotype data for a case-control study of unrelated individuals.
    Hum Hered, Vol. 55, No. 4. (2003), pp. 179-190.
    by DO Stram, C Leigh Pearce, P Bretsky, M Freedman, JN Hirschhorn, D Altshuler, LN Kolonel, BE Henderson, DC Thomas
    posted to haplotypes imputation tag-snps by StatAnika on 2007-11-22 16:01:57 as read
  • Tag SNP selection for association studies.
    Genet Epidemiol, Vol. 27, No. 4. (December 2004), pp. 365-374.
    by DO Stram
    posted to haplotype-blocks haplotypes tag-snps by StatAnika on 2007-11-22 15:59:09 as read along with 1 person Ayest
  • Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals.
    Hum Hered, Vol. 53, No. 2. (2002), pp. 79-91.
    by DV Zaykin, PH Westfall, SS Young, MA Karnoub, MJ Wagner, MG Ehm
    posted to haplotypes by StatAnika on 2007-11-22 16:06:06 as read
  • TAS2R38 (phenylthiocarbamide) haplotypes, coronary heart disease traits, and eating behavior in the British Women's Heart and Health Study.
    Am J Clin Nutr, Vol. 81, No. 5. (May 2005), pp. 1005-1011.
    by NJ Timpson, M Christensen, DA Lawlor, TR Gaunt, IN Day, S Ebrahim, G Davey Smith
    posted to bwhhs chd haplotypes tas2r by sometwo on 2006-02-20 12:28:37 as read
  • An utter refutation of the 'Fundamental Theorem of the HapMap'
    Eur J Hum Genet (15 February 2006)
    by Joseph D D Terwilliger, Tero Hiekkalinna
    posted to haplotypes hapmap by sometwo on 2006-02-20 10:37:08 as ** along with 6 people Terkko balajis santi mbeautru jermth ryanraaum
  • A study of TH01 and IGF2-INS-TH haplotypes in relation to smoking initiation in three independent surveys.
    Pharmacogenet Genomics, Vol. 16, No. 1. (January 2006), pp. 15-23.
    by S Rodríguez, S Huang, XH Chen, TR Gaunt, HE Syddall, JA Gilg, GJ Miller, CC Cooper, DG Cook, PH Whincup, IN Day
    posted to haplotypes igf2 ins ours th by sometwo on 2006-02-20 10:18:16 as read
  • Replication of IGF2-INS-TH*5 haplotype effect on obesity in older men and study of related phenotypes
    European Journal of Human Genetics, Vol. aop, No. current.
    by Santiago Rodríguez, Tom R Gaunt, Elaine Dennison, Xiao-He Chen, Holly E Syddall, David IW Phillips, Cyrus Cooper, Ian NM Day,
    posted to haplotypes igf2 ins obesity ours th by sometwo on 2006-02-20 12:27:56 as read
  • Transferability of tag SNPs in genetic association studies in multiple populations
    Nature Genetics, Vol. 38, No. 11. (22 October 2006), pp. 1298-1303.
    by Paul IW de Bakker, Noël P Burtt, Robert R Graham, Candace Guiducci, Roman Yelensky, Jared A Drake, Todd Bersaglieri, Kathryn L Penney, Johannah Butler, Stanton Young, Robert C Onofrio, Helen N Lyon, Daniel O Stram, Christopher A Haiman, Matthew L Freedman, Xiaofeng Zhu, Richard Cooper, Leif Groop, Laurence N Kolonel, Brian E Henderson, Mark J Daly, Joel N Hirschhorn, David Altshuler
    posted to association_studies haplotypes by ramensky on 2007-02-24 02:38:17 as ** along with 1 person jasonbobe
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to haplotypes population_genetics by ramensky on 2008-03-23 22:11:20 as ** along with 8 people and 2 groups Zephyrus djkt mailund thomaskelder Archaeogenetics jo_davies jyuh frohike Roswell Cancer Crosstalk Fasting, food and evolution
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
    posted to haplotypes by ramensky on 2008-02-26 11:44:51 as ** along with 12 people and 2 groups psique eoghanharr Cortel textoris pcahan1 cgasa tabu adepace djkt vplagnol jjannink jermth EisenLab PROPOSED_CGASA
  • Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104.
    by Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers
    posted to haplotypes population_genetics by ramensky on 2008-03-23 22:11:02 as ** along with 11 people and 1 group Zephyrus cgravlee echinotrix EsepBib zwang qwermish xingxu mailund Dorkins adacier Archaeogenetics Roswell Cancer Crosstalk
  • Genome-wide detection and characterization of positive selection in human populations
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 913-918.
    by Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A Mccarroll, Rachelle Gaudet, Stephen F Schaffner, Eric S Lander
    posted to evolution haplotypes positive_selection by ramensky on 2007-11-29 00:03:49 as ** along with 7 people brian dchughes djkt hms ryanraaum iris42 jasonflannick
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to evolution haplotypes misc nssnps by ramensky on 2007-06-17 16:30:18 as ** along with 28 people and 7 groups waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    Nature Genetics, Vol. 38, No. 11. (22 October 2006), pp. 1251-1260.
    by Donald F Conrad, Mattias Jakobsson, Graham Coop, Xiaoquan Wen, Jeffrey D Wall, Noah A Rosenberg, Jonathan K Pritchard
    posted to haplotypes by ramensky on 2007-02-24 02:35:16 as ** along with 3 people vplagnol jasonbobe ryanraaum
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
    posted to haplotypes nssnps by ramensky on 2008-01-28 21:29:36 as ** along with 19 people and 1 group adijr Neeperando operon carlblesius bpb balicea skhadar dullhunk djkt jackjackjjj massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
  • Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism.
    Am J Hum Genet, Vol. 67, No. 4. (October 2000), pp. 881-900.
    by SM Fullerton, AG Clark, KM Weiss, DA Nickerson, SL Taylor, JH Stengârd, V Salomaa, E Vartiainen, M Perola, E Boerwinkle, CF Sing
    posted to association_studies haplotypes nssnps by ramensky on 2008-01-28 20:14:32 as **
  • Two sources of the Russian patrilineal heritage in their Eurasian context.
    Am J Hum Genet, Vol. 82, No. 1. (January 2008), pp. 236-250.
    by O Balanovsky, S Rootsi, A Pshenichnov, T Kivisild, M Churnosov, I Evseeva, E Pocheshkhova, M Boldyreva, N Yankovsky, E Balanovska, R Villems
    posted to evolution haplotypes by ramensky on 2008-03-18 09:44:05 as ** along with 2 people Archaeogenetics ArtemPankin
  • A block-free hidden Markov model for genotypes and its application to disease association.
    J Comput Biol, Vol. 12, No. 10. (December 2005), pp. 1243-1260.
    by G Kimmel, R Shamir
    posted to haplotypes hidden markov model by oilcan on 2006-08-08 16:25:15 as ****
  • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    Mol Biol Evol, Vol. 12, No. 5. (1 September 1995), pp. 921-927.
    by L Excoffier, M Slatkin
    posted to haplotypes phasing by nedwards on 2008-05-02 21:34:38 as **
  • Combinatorial Problems Arising in SNP and Haplotype Analysis
    Discrete Mathematics and Theoretical Computer Science (2003), pp. 26-47.
    by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
    posted to haplotypes phasing by nedwards on 2008-05-02 18:57:12 as **
  • A Survey of Computational Methods for Determining Haplotypes
    Computational Methods for SNPs and Haplotype Inference (2004), pp. 26-47.
    by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
    posted to haplotypes by nedwards on 2007-12-10 16:18:30 as **
  • A haplotype map of the human genome
    Nature, Vol. 437, No. 7063., pp. 1299-1320.
    by The
    posted to genome haplotypes hapmap human ld by mbeautru on 2006-08-10 23:54:25 as read along with 14 people and 1 group balajis cfleet dlr pachowwhite balicea tiago ashandanj eukfn joepickrell cat_worth hms adijr mailund wenhui structural_bioinformatics
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to association haplotypes variation by lp2 on 2008-02-01 10:34:59 as ** along with 11 people and 2 groups gowtham psique jyuh dchughes djkt frohike ryanraaum xingxu jasonflannick skumagai mfm11 Bioinformatics parkinson's disease references
  • The Noncoding Regions of HLA-DRB Uncover Interlineage Recombinations as a Mechanism of HLA Diversification
    J Immunol, Vol. 165, No. 10. (15 November 2000), pp. 5664-5670.
    by Katja Kotsch, Rainer Blasczyk
    posted to ah ceh drb haplotypes hla mhc by jermth on 2006-09-07 02:06:40 as *****
  • High-resolution haplotype structure in the human genome.
    Nat Genet, Vol. 29, No. 2. (October 2001), pp. 229-232.
    by MJ Daly, JD Rioux, SF Schaffner, TJ Hudson, ES Lander
    posted to haplotypes ld thesis by jermth on 2008-06-10 07:41:18 as ** along with 1 person madhadron
  • Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes.
    Am J Hum Genet, Vol. 75, No. 1. (July 2004), pp. 35-43.
    by C Durrant, KT Zondervan, LR Cardon, S Hunt, P Deloukas, AP Morris
    posted to cladistics haplotypes ld snps thesis by jermth on 2006-08-31 03:46:02 as read along with 1 person pcahan1
  • Recent origin of HLA-DRB1 alleles and implications for human evolution.
    Nat Genet, Vol. 18, No. 3. (March 1998), pp. 237-242.
    by TF Bergström, A Josefsson, HA Erlich, U Gyllensten
    posted to drb haplotypes hla mhc by jermth on 2006-09-07 02:22:22 as **
  • Functional epistasis on a common MHC haplotype associated with multiple sclerosis
    Nature (27 September 2006)
    by Jon W Gregersen, Kamil R Kranc, Xiayi Ke, Pia Svendsen, Lars S Madsen, Allan R Thomsen, Lon R Cardon, John I Bell, Lars Fugger
    posted to class_2 drb haplotypes hla mhc multiple-sclerosis by jermth on 2006-10-09 10:17:11 as **
  • Identifying four Trypanosoma cruzi I isolate haplotypes from different geographic regions in Colombia.
    Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, Vol. 7, No. 4. (July 2007), pp. 535-539.
    by C Herrera, MD Bargues, A Fajardo, M Montilla, O Triana, GA Vallejo, F Guhl
    posted to cruzi geography haplotypes isolate tcruzi-i trypanosoma by fernan on 2008-04-29 18:02:25 as ** along with 1 person rcosentino
  • Y-chromosomal STR haplotypes in three ethnic groups and one cosmopolitan population from Tunisia.
    Forensic science international, Vol. 152, No. 1. (11 August 2005), pp. 95-99.
    by L Cherni, L Pereira, A Goios, BY Loueslati, H Khodjet el Khil, I Gomes, L Gusmão, C Alves, A Slama, A Amorim, AB Elgaaied
    posted to haplotypes str tunisia y by Archaeogenetics on 2008-05-07 17:57:15 as *****
  • Y chromosome STR haplotypes of Tibetan Living Tibet Lassa.
    Forensic Sci Int, Vol. 172, No. 1. (2 October 2007), pp. 79-83.
    by LL Kang, K Liu, Y Ma
    posted to haplotypes tibet y by Archaeogenetics on 2007-11-14 21:02:14 as *****
  • Molecular dissection of the Y chromosome haplogroup E-M78 (E3b1a): a posteriori evaluation of a microsatellite-network-based approach through six new biallelic markers.
    Hum Mutat, Vol. 27, No. 8. (August 2006), pp. 831-832.
    by F Cruciani, R La Fratta, A Torroni, PA Underhill, R Scozzari
    posted to biallelic e3b1a haplotypes network phylogeny snp str y by Archaeogenetics on 2006-10-30 23:48:28 as *****
  • Haplotypes for 13 Y-chromosomal STR loci in South Tunisian population (Sfax region).
    Forensic Sci Int, Vol. 164, No. 2-3. (20 December 2006), pp. 249-253.
    by I Ayadi, L Ammar-Keskes, A Rebai
    posted to haplotypes sfax tunisia y by Archaeogenetics on 2007-11-14 21:05:25 as *****
  • Y-chromosomal STR haplotypes in Sicily.
    Forensic science international, Vol. 159, No. 2-3. (2 June 2006), pp. 235-240.
    by C Robino, S Inturri, S Gino, C Torre, C Di Gaetano, F Crobu, V Romano, G Matullo, A Piazza
    posted to g2c haplotypes sicily str trapani y by Archaeogenetics on 2008-05-09 05:04:06 as **
  • An intragenic deletion of the P gene is the common mutation causing tyrosinase-positive oculocutaneous albinism in southern African Negroids.
    Am J Hum Genet, Vol. 56, No. 3. (March 1995), pp. 586-591.
    by G Stevens, J van Beukering, T Jenkins, M Ramsay
    posted to 27kb-del africa albinism haplotypes oca2 sub-saharan_africa by Archaeogenetics on 2007-10-18 20:31:25 as *****
  • Y-chromosomal haplotypes for the AmpFlSTR Yfiler PCR Amplification Kit in a population sample from Central Poland.
    Forensic science international, Vol. 168, No. 1. (3 May 2007), pp. 61-67.
    by I Soltyszewski, W Pepinski, M Spolnicka, E Kartasinska, M Konarzewska, J Janica
    posted to g2c haplotypes poland str y by Archaeogenetics on 2008-05-09 03:42:27 as read
  • Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay.
    International journal of legal medicine, Vol. 119, No. 4. (July 2005), pp. 241-246.
    by B Berger, A Lindinger, H Niederstätter, P Grubwieser, W Parson
    posted to 17_strs austria haplotypes no_m201 y by Archaeogenetics on 2008-07-07 02:55:51 as **
  • Y-chromosomal STR haplotypes in Berber and Arabic-speaking populations from Morocco.
    Forensic science international, Vol. 140, No. 1. (10 February 2004), pp. 113-115.
    by L Quintana-Murci, A Bigham, H Rouba, A Barakat, K McElreavey, M Hammer
    posted to haplotypes morocco str y by Archaeogenetics on 2008-05-07 18:12:41 as *****
  • Human Y-specific STR haplotypes in population of Serbia and Montenegro.
    Forensic Sci Int, Vol. 171, No. 2-3. (13 September 2007), pp. 216-221.
    by M Stevanović, V Dobricić, D Keckarević, A Perović, D Savić-Pavićević, M Keckarević-Marković, A Jovanović, S Romac
    posted to haplotypes montenegro serbia str y by Archaeogenetics on 2007-10-04 23:40:27 as *****
  • Haplotype frequencies of 16 Y-chromosome STR loci in the Barcelona metropolitan area population using Y-Filer kit.
    Forensic Sci Int, Vol. 172, No. 2-3. (25 October 2007), pp. 211-217.
    by C Sánchez, C Barrot, A Xifró, M Ortega, IG de Aranda, E Huguet, J Corbella, M Gené
    posted to barcelona haplotypes spain str y yfiler by Archaeogenetics on 2007-11-19 15:33:18 as *****
  • Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample
    International Journal of Legal Medicine, Vol. 122, No. 3. (May 2008), pp. 251-255.
    by Robino, , Crobu, , Gaetano, , Bekada, , Benhamamouch, , Cerutti, , Piazza, , Inturri, , Torre,
    posted to algeria haplotypes y by Archaeogenetics on 2008-07-07 02:50:36 as **
  • Y-chromosomal short tandem repeat haplotypes in southern Croatian male population defined by 17 loci.
    Croatian medical journal, Vol. 49, No. 2. (April 2008), pp. 201-206.
    by J Ljubković, A Stipisić, D Sutlović, M Definis-Gojanović, K Bucan, S Andelinović
    posted to 17-strs croatia haplotypes y by Archaeogenetics on 2008-07-07 05:02:27 as **
  • Population genetic polymorphisms for 17 Y-chromosomal STRs haplotypes of Chinese Salar ethnic minority group.
    Leg Med (Tokyo), Vol. 9, No. 4. (July 2007), pp. 203-209.
    by B Zhu, C Shen, X Xun, J Yan, Y Deng, J Zhu, Y Liu
    posted to china haplotypes salar strs y by Archaeogenetics on 2007-10-26 03:03:31 as *****
  • Y-chromosome STR haplotype profiling in the Mongolian population.
    Legal medicine (Tokyo, Japan), Vol. 8, No. 1. (January 2006), pp. 58-61.
    by KD Kwak, G Suren, S Tundewrentsen, HJ Jin, SB Hong, MS Han, W Kim
    posted to 11-strs haplotypes mongolia y by Archaeogenetics on 2008-04-04 23:47:44 as read
  • Y-chromosomal STR haplotypes in an Albanian population sample.
    Forensic science international, Vol. 129, No. 2. (26 September 2002), pp. 128-130.
    by C Robino, S Gino, U Ricci, P Grignani, C Previdere, C Torre
    posted to 8-strs albania haplotypes y by Archaeogenetics on 2008-04-05 00:19:04 as ***
  • Allele frequencies and population data for 17 Y-chromosome STR loci in a Serbian population sample from Vojvodina province.
    Forensic Sci Int (3 May 2007)
    by Igor S S Veselinovic, Dragana M M Zgonjanin, Miljen P P Maletin, Oliver Stojkovic, Maja Djurendic-Brenesel, Radenko M M Vukovic, Milos M M Tasic
    posted to haplotypes serbia vojvodina y yfiler by Archaeogenetics on 2007-11-19 15:30:39 as *****
  • Y-chromosomal STR haplotypes in Macedonian population samples.
    Forensic science international, Vol. 148, No. 1. (10 February 2005), pp. 69-73.
    by M Spiroski, T Arsov, C Krüger, S Willuweit, L Roewer
    posted to haplotypes macedonia str y by Archaeogenetics on 2008-05-07 18:15:10 as *****
  • DNA typing of short tandem repeat loci on Y-chromosome of Greek population.
    Forensic science international, Vol. 126, No. 3. (23 May 2002), pp. 261-264.
    by KS Parreira, MV Lareu, P Sánchez-Diz, I Skitsa, A Carracedo
    posted to greece haplotypes str y by Archaeogenetics on 2008-05-09 03:26:24 as **
  • Population data of Y-chromosomal STRs in Russian males of the Primorye region population.
    Forensic science international, Vol. 159, No. 1. (25 May 2006), pp. 71-76.
    by R Lessig, J Edelmann, WJ Kleemann, V Kozhemyako
    posted to haplotypes russia y by Archaeogenetics on 2008-05-27 10:02:17 as *****
  • Population data for Y-chromosome haplotypes defined by 17 STRs (AmpFlSTR YFiler) in Portugal.
    Forensic science international, Vol. 171, No. 2-3. (13 September 2007), pp. 250-255.
    by C Alves, V Gomes, MJ Prata, A Amorim, L Gusmão
    posted to 17-strs haplotypes portugal y by Archaeogenetics on 2008-07-07 03:00:13 as **
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