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Tag haplotype [44 articles]

Recent papers classified by the tag haplotype.
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
    posted to genomics haplotype by textoris on 2006-01-25 09:55:02 as read along with 11 people and 2 groups jermth eoghanharr Cortel pcahan1 cgasa tabu adepace djkt vplagnol ramensky jjannink EisenLab PROPOSED_CGASA
  • Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem.
    Brief Bioinform, Vol. 3, No. 1. (March 2002), pp. 23-31.
    by R Lippert, R Schwartz, G Lancia, S Istrail
    posted to distance error haplotype minimum reconstruction by tanyabw on 2008-01-20 19:26:53 as ** along with 1 group Bioinformatics
  • Meiotic crossover hotspots contained in haplotype block boundaries of the mouse genome.
    Proc Natl Acad Sci U S A (9 August 2007)
    by Liisa Kauppi, Maria Jasin, Scott Keeney
    posted to cross-over genome-wide haplotype meiosis by sebastien_vigneau on 2007-08-12 18:53:09 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • SNP-specific extraction of haplotype-resolved targeted genomic regions
    Nucl. Acids Res. (8 July 2008), gkn345.
    by Johannes Dapprich, Deborah Ferriola, Eleni E Magira, Mark Kunkel, Dimitri Monos
    posted to snp haplotype by sbozdag on 2008-07-08 18:59:14 as **
  • Association of adenomatous polyposis coli (APC) gene polymorphisms with autism spectrum disorder (ASD).
    Am J Med Genet B Neuropsychiatr Genet (12 January 2007)
    by Xiao-Lei L Zhou, Maibritt Giacobini, Britt-Marie M Anderlid, Henrik Anckarsäter, Davood Omrani, Christopher Gillberg, Magnus Nordenskjöld, Annika Lindblom
    posted to utr snp polymorphism haplotype gene autism apc by mgaldzic on 2007-01-17 20:04:56 as ** along with 1 group CHIP
  • Identification and functional significance of SNPs underlying conserved haplotype frameworks across ethnic populations.
    Pharmacogenet Genomics, Vol. 16, No. 9. (September 2006), pp. 667-682.
    by C Ouyang, TG Krontiris
    posted to snps haplotype functional ethnic by mgaldzic on 2007-01-15 20:01:29 as ** along with 1 group CHIP
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to genome-wide haplotype human population snp by mercaptan on 2005-03-01 18:33:13 as **** along with 6 people and 1 group jshapiro akeyj saxonov Archaeogenetics hdopazo djkt BioinfoCIPF
  • The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean
    Molecular Ecology, Vol. 16, No. 24. (December 2007), pp. 5259-5266.
    by D Magri, S Fineschi, R Bellarosa, A Buonamici, F Sebastiani, B Schirone, MC Simeone, GG Vendramin
    posted to haplotype phylogeography by mbuhanan on 2008-03-20 20:08:12 as **
  • High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history
    Heredity, Vol. 93, No. 5. (2004), pp. 510-515.
    by P Jimenez, Lopez U de Heredia, C Collada, Z Lorenzo, L Gil
    posted to chloroplast haplotype method by mbuhanan on 2008-03-20 23:49:58 as **
  • A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
    Nature Genetics, Vol. 38, No. 10. (24 September 2006), pp. 1166-1172.
    by Paul IW de Bakker, Gil Mcvean, Pardis C Sabeti, Marcos M Miretti, Todd Green, Jonathan Marchini, Xiayi Ke, Alienke J Monsuur, Pamela Whittaker, Marcos Delgado, Jonathan Morrison, Angela Richardson, Emily C Walsh, Xiaojiang Gao, Luana Galver, John Hart, David A Hafler, Margaret Pericak-Vance, John A Todd, Mark J Daly, John Trowsdale, Cisca Wijmenga, Tim J Vyse, Stephan Beck, Sarah S Murray, Mary Carrington, Simon Gregory, Panos Deloukas, John D Rioux
    posted to snps haplotype disease association-studies by massivemayhem on 2007-01-18 10:59:51 as ** along with 1 person jermth
  • Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human History.
    PLoS Genet, Vol. 2, No. 1. (27 January 2006)
    by James A A Traherne, Roger Horton, Anne N N Roberts, Marcos M M Miretti, Matthew E E Hurles, C Andrew A Stewart, Jennifer L L Ashurst, Alexey M M Atrazhev, Penny Coggill, Sophie Palmer, Jeff Almeida, Sarah Sims, Laurens G G Wilming, Jane Rogers, Pieter J J de Jong, Mary Carrington, John F F Elliott, Stephen Sawcer, John A A Todd, John Trowsdale, Stephan Beck
    posted to autoimmune haplotype mhc by lhonigberg on 2006-01-28 23:02:08 as **
  • Association between Angiotensin-Converting Enzyme Gene Polymorphisms and Diabetic Nephropathy: Case-Control, Haplotype, and Family-Based Study in Three European Populations.
    J Am Soc Nephrol (21 March 2007)
    by Samy Hadjadj, Lise Tarnow, Carol Forsblom, Gbenga Kazeem, Michel Marre, Per-Henrik H Groop, Hans-Henrik H Parving, François Cambien, David A A Tregouet, Ivo G G Gut, Alexandre Théva, Dominique Gauguier, Martin Farrall, Roger Cox, Fumihiko Matsuda, Mark Lathrop, Nathalie Hager-Vionnet
    posted to snp ras haplotype dn by jyuh on 2007-06-14 03:43:29 as ** along with 1 person Terkko
  • Ongoing Adaptive Evolution of ASPM, a Brain Size Determinant in Homo sapiens
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1720-1722.
    by Nitzan Mekel-Bobrov, Sandra L Gilbert, Patrick D Evans, Eric J Vallender, Jeffrey R Anderson, Richard R Hudson, Sarah A Tishkoff, Bruce T Lahn
    posted to brain evolution haplotype selection by JAShapiro on 2005-09-18 20:48:13 as read along with 5 people and 1 group stevanspringer Wabin grzegorz balajis chrys FAB-lab
  • Microcephalin, a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1717-1720.
    by Patrick D Evans, Sandra L Gilbert, Nitzan Mekel-Bobrov, Eric J Vallender, Jeffrey R Anderson, Leila M Vaez-Azizi, Sarah A Tishkoff, Richard R Hudson, Bruce T Lahn
    posted to brain haplotype selection by JAShapiro on 2005-09-19 17:40:31 as read along with 6 people and 2 groups stevanspringer grzegorz cgreal balajis Archaeogenetics cmm CGREL FAB-lab
  • DNA polymorphisms and haplotypes in the 5'-upstream region of the ABO blood group gene
    Legal Medicine, Vol. 8, No. 2. (March 2006), pp. 121-127.
    by Tatsuyuki Okiura, Hiroaki Nishimukai, Koji Nishimura, Chitoshi Orimoto, Yasuo Fukumori
    posted to blood-group haplotype by dchughes to the group G4ID on 2006-02-18 14:37:44 as ** along with 1 group Genetics-of-Gambling
  • Determination of haplotypes from single DNA molecules: a method for single-molecule barcoding
    Human Mutation, Vol. 28, No. 9. (2007), pp. 913-921.
    by Ming Xiao, Matthew P Gordon, Angie Phong, Connie Ha, Ting-Fung Chan, Dongmei Cai, Paul R Selvin, Pui-Yan Kwok
    posted to snps haplotype by dchughes to the group G4ID on 2007-07-28 11:22:16 as ** along with 1 group Genetics-of-Gambling
  • Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice
    Genome Res., Vol. 16, No. 5. (1 May 2006), pp. 618-626.
    by Guangming He, Xiaojin Luo, Feng Tian, Kegui Li, Zuofeng Zhu, Wei Su, Xiaoyin Qian, Yongcai Fu, Xiangkun Wang, Chuanqing Sun, Jinshui Yang
    posted to genomics expression gene genetics structure haplotype qtl rice by bsmagic to the group Bioinformatics on 2006-07-28 05:27:49 as ** along with 1 group bioinplant
  • From the Cover: Gene movement by Helitron transposons contributes to the haplotype variability of maize
    PNAS, Vol. 102, No. 25. (21 June 2005), pp. 9068-9073.
    by Jinsheng Lai, Yubin Li, Joachim Messing, Hugo K Dooner
    posted to gene haplotype helitron maize movement plant transposon by bsmagic to the group Bioinformatics on 2006-07-28 05:11:16 as ** along with 1 group bioinplant
  • A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
    Am J Hum Genet, Vol. 78, No. 4. (April 2006), pp. 629-644.
    by P Scheet, M Stephens
    posted to fastphase haplotype by lconde to the group BioinfoCIPF on 2006-07-21 18:05:15 as **
  • A linear-time algorithm for the perfect phylogeny haplotyping (PPH) problem.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 522-553.
    by Z Ding, V Filkov, D Gusfield
    posted to haplotype pph by lconde to the group BioinfoCIPF on 2006-07-21 18:02:36 as **
  • TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2130-2132.
    by D Posada, TJ Maxwell, AR Templeton
    posted to genotype haplotype phenotype trees by fisherp on 2006-03-27 14:05:03 as *** along with 1 person qfwills
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to haplotype human-variation snps by dchughes on 2007-10-18 12:03:19 as ** along with 9 people and 2 groups skumagai jasonflannick jyuh djkt frohike lp2 ryanraaum xingxu psique parkinson's disease references Bioinformatics
  • Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi
    Genome Res., Vol. 17, No. 7. (2007), pp. 1101-1110.
    by HK Jong, MS Waterman, LM Li
    posted to diploid genome haplotype by bpb on 2007-09-05 12:41:21 as ** along with 1 person nhp
  • The International HapMap Project: The International HapMap Consortium
    Nature, Vol. 426, No. 6968. (2003), pp. 789-796.
    posted to genome haplotype hapmap human variation by bpb on 2007-08-29 15:15:41 as **
  • Haplotype homozygosity and derived alleles in the human genome.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1053-1059.
    by AE Fry, CJ Trafford, MA Kimber, MS Chan, KA Rockett, DP Kwiatkowski
    posted to alelle derived diversity haplotype selection snp by bpb on 2007-11-06 14:58:20 as ** along with 2 people balajis ashandanj
  • Constrained hidden Markov models for population-based haplotyping.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by N Landwehr, T Mielikäinen, L Eronen, H Toivonen, H Mannila
    posted to haplotype population by Ayest on 2007-06-11 08:55:21 as **
  • Prion gene haplotypes of U.S. cattle
    BMC Genetics, Vol. 7 (08 November 2006), 51.
    by Michael L Clawson, Michael P Heaton, John W Keele, Timothy PL Smith, Gregory P Harhay, William W Laegreid
    posted to bovin haplotype prp by Ayest on 2006-11-15 08:05:30 as **
  • Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms.
    Biostatistics, Vol. 4, No. 4. (October 2003), pp. 513-522.
    by SS Li, N Khalid, C Carlson, LP Zhao
    posted to snp haplotype by Ayest on 2007-01-25 17:04:52 as **
  • Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 908-916.
    by K Zhang, ZS Qin, JS Liu, T Chen, MS Waterman, F Sun
    posted to snp haplotype association by Ayest on 2007-01-17 16:21:42 as **
  • The structure of haplotype blocks in the human genome.
    Science, Vol. 296, No. 5576. (21 June 2002), pp. 2225-2229.
    by SB Gabriel, SF Schaffner, H Nguyen, JM Moore, J Roy, B Blumenstiel, J Higgins, M DeFelice, A Lochner, M Faggart, SN Liu-Cordero, C Rotimi, A Adeyemo, R Cooper, R Ward, ES Lander, MJ Daly, D Altshuler
    posted to haplotype by Ayest on 2007-03-04 12:34:03 as **
  • Genotyping error detection through tightly linked markers.
    Genetics, Vol. 164, No. 3. (July 2003), pp. 1161-1173.
    by G Zou, D Pan, H Zhao
    posted to detection error haplotype by Ayest on 2007-03-04 12:31:43 as **
  • A rapid conditional enumeration haplotyping method in pedigrees.
    Genet Sel Evol, Vol. 40, No. 1. (y 2008), pp. 25-36.
    by Guimin Gao, Ina Hoeschele
    posted to haplotype by Ayest on 2008-01-04 10:51:48 as **
  • Haploview: analysis and visualization of LD and haplotype maps
    Bioinformatics, Vol. 21, No. 2., 263.
    by JC Barrett, B Fry, J Maller, MJ Daly
    posted to bioinformatic haplotype software by Ayest on 2006-07-11 15:17:19 as ** along with 1 person mailund
  • A recursive method for solving haplotype frequencies with application to genetics.
    J Bioinform Comput Biol, Vol. 4, No. 6. (December 2006), pp. 1269-1285.
    by MK Ng, ES Fung, YF Lee, WK Ching
    posted to snp haplotype by Ayest on 2007-01-26 08:09:41 as **
  • An efficient method for multi-locus molecular haplotyping.
    Nucleic Acids Res, Vol. 35, No. 1. (2007)
    by BA Konfortov, AT Bankier, PH Dear
    posted to haplotype molecular by Ayest on 2007-05-30 17:36:06 as **
  • Research on parameterized algorithms of the individual haplotyping problem.
    J Bioinform Comput Biol, Vol. 5, No. 3. (June 2007), pp. 795-816.
    by M Xie, J Chen, J Wang
    posted to haplotype by Ayest on 2007-08-13 09:27:25 as **
  • Evidence for large inversion polymorphisms in the human genome from HapMap data
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 219-230.
    by Vikas Bansal, Ali Bashir, Vineet Bafna
    posted to snp inversion haplotype by Ayest on 2007-02-05 12:49:32 as ** along with 2 people and 3 groups brant dchughes EisenLab G4ID Genetics-of-Gambling
  • An efficient haplotyping method with DNA pools.
    Nucleic Acids Res, Vol. 30, No. 15. (1 August 2002)
    by E Inbar, B Yakir, A Darvasi
    posted to haplotype by Ayest on 2006-10-25 10:17:16 as **
  • Haplotype Inference in General Pedigrees Using the Cluster Variation Method
    Genetics, Vol. 177, No. 2. (1 October 2007), pp. 1101-1116.
    by Cornelis A Albers, Tom Heskes, Hilbert J Kappen
    posted to haplotype by Ayest on 2007-11-05 13:46:46 as ***
  • HaploRec: Efficient and accurate large-scale reconstruction of haplotypes
    BMC Bioinformatics, Vol. 7 (22 December 2006), 542.
    by Lauri Eronen, Floris Geerts, Hannu Toivonen
    posted to haplotype by Ayest on 2007-01-02 14:33:24 as ** along with 1 person Terkko
  • WHAP: haplotype-based association analysis.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 255-256.
    by S Purcell, MJ Daly, PC Sham
    posted to software haplotype association by Ayest on 2007-01-24 09:02:25 as **
  • Computation of haplotypes on SNPs subsets: advantage of the "global method"
    BMC Genetics, Vol. 7 (26 October 2006), 50.
    by Cedric Coulonges, Olivier Delaneau, Manon Girard, Herve Do, Ronald Adkins, Jean-Louis Spadoni, Jean-Francois Zagury
    posted to haplotype snp by Ayest on 2006-11-20 12:30:27 as **
  • A markov chain model for haplotype assembly from SNP fragments.
    Genome Inform, Vol. 17, No. 2. (2006), pp. 162-171.
    by RS Wang, LY Wu, XS Zhang, L Chen
    posted to haplotype snp by Ayest on 2007-05-31 09:00:36 as **
  • Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104.
    by Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers
    posted to variation snp phylogenetics human haplotype geography by adacier on 2008-05-02 03:21:34 as ** along with 10 people Archaeogenetics cgravlee echinotrix EsepBib ramensky zwang qwermish xingxu mailund Dorkins
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