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Tag gq-dynamics [39 articles]

Recent papers classified by the tag gq-dynamics.
  • Polymorphism of human telomeric quadruplex structures.
    Biochimie, Vol. 90, No. 8. (August 2008), pp. 1172-1183.
    by J Dai, M Carver, D Yang
    posted to gqarticle gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-08-25 20:57:09 as *** along with 1 group G-quadruplex
  • Surface plasmon resonance for probing quadruplex folding and interactions with proteins and small molecules.
    Methods, Vol. 43, No. 4. (December 2007), pp. 302-312.
    by JE Redman
    posted to gqarticle gq-binder gq-dynamics gq-methods gq-recognition g-quadruplex by jmrivort on 2007-11-07 02:41:55 as **** along with 1 person and 1 group jerlf01 G-quadruplex
  • DNA and RNA quadruplex ligands.
    Nucleic acids symposium series (2004), No. 52. (2008), pp. 7-8.
    by A De Cian, J Gros, A Guédin, M Haddi, S Lyonnais, L Guittat, JF Riou, C Trentesaux, B Saccà, L Lacroix, P Alberti, JL Mergny
    posted to gq-structure gq-recognition gq-dynamics gq-binder g-quadruplex by jmrivort on 2008-09-16 14:30:38 as ** along with 1 group G-quadruplex
  • Thermodynamic contributions of the reactions of DNA intramolecular structures with their complementary strands.
    Biochimie (8 February 2008)
    by Hui-Ting T Lee, Chris M M Olsen, Lela Waters, Holly Sukup, Luis A A Marky
    posted to gq-dynamics gq-methods gq-structure g-quadruplex by jmrivort on 2008-03-19 11:59:52 as *** along with 1 group G-quadruplex
  • The formation pathway of tetramolecular G-quadruplexes
    Nucl. Acids Res. (27 November 2007), gkm1050.
    by Caroline Bardin, Jean L Leroy
    posted to gqarticle gq-dynamics gq-structure g-quadruplex by jmrivort on 2007-11-28 16:27:25 as **** along with 1 group G-quadruplex
  • Hydration regulates the thermodynamic stability of DNA structures under molecular crowding conditions.
    Nucleosides Nucleotides Nucleic Acids, Vol. 26, No. 6. (2007), pp. 589-595.
    by D Miyoshi, H Karimata, N Sugimoto
    posted to gqarticle gq-dynamics gq-recognition gq-structure g-quadruplex by jmrivort on 2007-12-12 12:58:31 as **** along with 1 group G-quadruplex
  • Heat capacity changes associated with guanine quadruplex formation: An isothermal titration calorimetry study.
    Biopolymers (8 January 2008)
    by Pinaki R R Majhi, Jianying Qi, Chungfei Tang, Richard H H Shafer
    posted to gq-dynamics gq-methods gq-structure g-quadruplex by jmrivort on 2008-01-11 22:13:03 as **** along with 1 group G-quadruplex
  • Single molecule conformational analysis of DNA G-quadruplexes.
    Biochimie (6 February 2008)
    by Pravin S S Shirude, Shankar Balasubramanian
    posted to gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-02-28 02:53:15 as ** along with 1 group G-quadruplex
  • Structural transition from the random coil to quadruplex of AG(3)(T(2)AG(3))(3) induced by Zn(2+).
    Biophys Chem (9 November 2007)
    by Chunying Wei, Qian Tang, Can Li
    posted to gqarticle gq-dynamics gq-structure g-quadruplex by jmrivort on 2007-11-26 00:46:45 as *** along with 1 group G-quadruplex
  • G-quadruplex preferentially forms at the very 3' end of vertebrate telomeric DNA
    Nucl. Acids Res. (23 December 2007), gkm1137.
    by Jun Tang, Zhong-Yuan Kan, Yuan Yao, Quan Wang, Yu-Hua Hao, Zheng Tan
    posted to gq-dynamics gq-ingenome g-quadruplex by jmrivort on 2007-12-24 15:04:11 as *** along with 1 group G-quadruplex
  • Formation of pseudosymmetrical G-quadruplex and i-motif structures in the proximal promoter region of the RET oncogene.
    J Am Chem Soc, Vol. 129, No. 33. (22 August 2007), pp. 10220-10228.
    by K Guo, A Pourpak, K Beetz-Rogers, V Gokhale, D Sun, LH Hurley
    posted to gene-regulation gqarticle gq-dynamics gq-ingenome gq-structure g-quadruplex by jmrivort on 2007-09-06 16:14:22 as **** along with 1 person and 2 groups xingyuan G-quadruplex Supramolecular
  • NMR Study of Ammonium Ion Binding to d[G(3)T(4)G(4)](2) and d[G(4)(T(4)G(4))(3)] G-Quadruplexes.
    Nucleosides Nucleotides Nucleic Acids, Vol. 26, No. 10. (2007), pp. 1547-1551.
    by P Podbevsek, P Sket, J Plavec
    posted to gqarticle gq-cation gq-dynamics g-quadruplex by jmrivort on 2007-12-12 13:22:04 as **** along with 1 group G-quadruplex
  • Structural Diversity and Extreme Stability of Unimolecular Oxytricha nova Telomeric G-Quadruplex.
    Biochemistry (26 February 2008)
    by Ja Y Lee, Jeongmin Yoon, Hyun W Kihm, D S Kim
    posted to gq-dynamics gq-structure g-quadruplex telomere by jmrivort on 2008-02-28 02:59:43 as *** along with 1 group G-quadruplex
  • Molecular Dynamics and Principal Components Analysis of Human Telomeric Quadruplex Multimers.
    Biophysical journal (28 March 2008)
    by Shozeb M M Haider, Gary N N Parkinson, Stephen Neidle
    posted to computational-studies gq-dynamics gq-ingenome gq-methods gq-recognition gq-structure g-quadruplex by jmrivort on 2008-04-08 12:03:50 as *** along with 1 group G-quadruplex
  • Spectroscopic study on the binding of a cationic porphyrin to DNA G-quadruplex under different K(+) concentrations.
    Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, Vol. 7, No. 8. (August 2008), pp. 948-955.
    by HJ Zhang, XF Wang, P Wang, XC Ai, JP Zhang
    posted to gq-binder gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-08-10 16:33:08 as *** along with 1 group G-quadruplex
  • Formation and temperature stability of G-quadruplex structures studied by electronic and vibrational dichroism spectroscopy combined with ab initio calculations.
    Biopolymers (24 October 2007)
    by Jakub Nový, Stanislav Böhm, Jarmila Králová, Vladimír Král, Marie Urbanová
    posted to gqarticle gq-dynamics gq-methods gq-structure g-quadruplex by jmrivort on 2007-10-27 17:37:13 as *** along with 1 group G-quadruplex
  • Diverse Polymorphism of G-Quadruplexes as a Kinetic Phenomenon.
    Journal of the American Chemical Society (1 October 2008)
    by Iztok Prislan, Jurij Lah, Gorazd Vesnaver
    posted to gq-structure gq-dynamics g-quadruplex by jmrivort on 2008-10-03 13:12:39 as ** along with 1 group G-quadruplex
  • Kinetically Favored Platination of Adenine in the G-Rich Human Telomeric Repeat.
    J Am Chem Soc (30 November 2007)
    by Lu Rao, Ulrich Bierbach
    posted to gqarticle gq-binder gq-dynamics gq-recognition g-quadruplex by jmrivort on 2007-12-02 17:11:31 as *** along with 1 group G-quadruplex
  • Structural stability analysis of the intermediates in the folding pathway of human telomeric hybrid-1 G-quadruplex based on fragment molecular orbital method.
    Nucleic acids symposium series (2004), No. 52. (2008), pp. 161-162.
    by H Yagi, T Mashimo, Y Sannohe, H Sugiyama
    posted to gq-structure gq-dynamics g-quadruplex by jmrivort on 2008-10-01 23:10:21 as ** along with 1 group G-quadruplex
  • Stability and kinetics of G-quadruplex structures
    Nucl. Acids Res. (21 August 2008), gkn517.
    by Andrew N Lane, Brad J Chaires, Robert D Gray, John O Trent
    posted to gq-dynamics gq-ingenome gq-methods gq-recognition gq-structure g-quadruplex by jmrivort on 2008-08-22 22:27:10 as ***** along with 1 group G-quadruplex
  • A Sequence-Independent Study of the Influence of Short Loop Lengths on the Stability and Topology of Intramolecular DNA G-Quadruplexes.
    Biochemistry (20 December 2007)
    by Anthony Bugaut, Shankar Balasubramanian
    posted to dna gq-dynamics gq-structure g-quadruplex by jmrivort on 2007-12-22 14:27:46 as **** along with 1 group G-quadruplex
  • Quadruplex melting.
    Methods, Vol. 43, No. 4. (December 2007), pp. 291-301.
    by PA Rachwal, KR Fox
    posted to gqarticle gq-dynamics gq-methods gq-recognition gq-structure g-quadruplex by jmrivort on 2007-11-07 02:43:35 as **** along with 1 person and 1 group xingyuan G-quadruplex
  • Structural polymorphism of intramolecular quadruplex of human telomeric DNA: effect of cations, quadruplex-binding drugs and flanking sequences
    Nucl. Acids Res. (4 June 2008), gkn351.
    by Timur I Gaynutdinov, Ronald D Neumann, Igor G Panyutin
    posted to gq-binder gq-cation gq-dynamics gq-recognition gq-structure g-quadruplex telomere by jmrivort on 2008-06-09 02:46:30 as *** along with 1 group G-quadruplex
  • NMR methods for studying quadruplex nucleic acids.
    Methods, Vol. 43, No. 4. (December 2007), pp. 264-277.
    by M Webba da Silva
    posted to gqarticle gq-dynamics gq-methods gq-structure g-quadruplex by jmrivort on 2007-11-07 02:44:23 as **** along with 1 group G-quadruplex
  • A thermodynamic overview of naturally occurring intramolecular DNA quadruplexes
    Nucl. Acids Res. (30 August 2008), gkn543.
    by Niti Kumar, Souvik Maiti
    posted to gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-08-31 13:00:40 as **** along with 1 group G-quadruplex
  • Effect of loop length variation on quadruplex-Watson Crick duplex competition
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4433-4442.
    by Niti Kumar, Bankanidhi Sahoo, KAS Varun, Sudipta Maiti, Souvik Maiti
    posted to gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-07-31 15:05:11 as *** along with 1 group G-quadruplex
  • Quadruplex-Coupled Kinetics Distinguishes Ligand Binding between G4 DNA Motifs.
    Biochemistry (4 December 2007)
    by Kangkan Halder, Shantanu Chowdhury
    posted to gq-binder gq-dynamics gq-ingenome gq-methods gq-recognition g-quadruplex by jmrivort on 2007-12-10 17:56:01 as ***** along with 1 group G-quadruplex
  • Human Telomeric DNA Forms Parallel-Stranded Intramolecular G-Quadruplex in K+ Solution under Molecular Crowding Condition
    J. Am. Chem. Soc. (17 August 2007)
    by Y Xue, Kan, Q Wang, Y Yao, J Liu, Hao, Z Tan
    posted to dna gqarticle gq-dynamics gq-structure g-quadruplex nucleic-acid structure by jmrivort on 2007-08-28 15:28:19 as ***** along with 1 person and 2 groups xingyuan G-quadruplex Supramolecular
  • Direct NMR Detection of Alkali Metal Ions Bound to G-Quadruplex DNA.
    J Am Chem Soc (23 February 2008)
    by Ramsey Ida, Gang Wu
    posted to gq-cation gq-dynamics gq-metal gq-structure g-quadruplex by jmrivort on 2008-02-27 14:45:49 as **** along with 1 group G-quadruplex
  • Allosteric Control of Self-Assembly: Modulating the Formation of Guanine Quadruplexes through Orthogonal Aromatic Interactions
    Angewandte Chemie International Edition, Vol. 9999, No. 9999. (2007), NA.
    by Janarthanan Jayawickramarajah, Debarati M Tagore, Lun K Tsou, Andrew D Hamilton
    posted to gqarticle gq-dynamics g-quadruplex self-assembly supramolecular by jmrivort on 2007-09-15 20:59:30 as **** along with 2 groups G-quadruplex Supramolecular
  • The Effect of INA [(R)-1-O-(1-Pyrenylmethyl)Glycerol] Insertions on the Structure and Biological Activity of a G-Quadruplex from a Critical Kras G-Rich Sequence.
    Nucleosides Nucleotides Nucleic Acids, Vol. 26, No. 10. (2007), pp. 1641-1643.
    by S Cogoi, M Paramasivan, LE Xodo, VV Filichev, EB Pedersen
    posted to gqarticle gq-binder gq-dynamics gq-recognition gq-structure g-quadruplex by jmrivort on 2007-12-12 13:19:09 as **** along with 1 group G-quadruplex
  • Role of molecular crowding in perturbing quadruplex-Watson Crick duplex equilibrium.
    Nucleic acids symposium series (2004), No. 52. (2008), pp. 157-158.
    by N Kumar, S Maiti
    posted to gq-structure gq-dynamics g-quadruplex by jmrivort on 2008-10-01 23:11:38 as *** along with 1 group G-quadruplex
  • Effect of Rubidium and Cesium Ions on the Dimeric Quaduplex formed by the Oxytricha Nova Telomeric Repeat Oligonucleotide D(GGGGTTTTGGGG).
    Nucleosides Nucleotides Nucleic Acids, Vol. 26, No. 8-9. (2007), pp. 1129-1132.
    by FC Marincola, A Virno, A Randazzo, A Lai
    posted to gq-cation gq-dynamics gq-structure g-quadruplex by jmrivort on 2007-12-10 18:05:42 as *** along with 1 group G-quadruplex
  • DNA conformations and their sequence preferences
    Nucl. Acids Res. (13 May 2008), gkn260.
    by Daniel Svozil, Jan Kalina, Marek Omelka, Bohdan Schneider
    posted to gq-dynamics gq-structure g-quadruplex by jmrivort on 2008-05-14 16:09:39 as ** along with 4 people and 2 groups aalibes TOchi reyez fpattyn G-quadruplex Neuroblastoma
  • Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures
    Nucl. Acids Res., Vol. 36, No. 12. (1 July 2008), pp. 4191-4203.
    by Robert D Gray, Jonathan B Chaires
    posted to gq-cation gq-dynamics gq-methods gq-structure g-quadruplex by jmrivort on 2008-07-11 11:06:19 as ** along with 1 group G-quadruplex
  • Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
    Nucl. Acids Res. (10 January 2008), gkm1138.
    by Johanna Eddy, Nancy Maizels
    posted to gq-dynamics gq-ingenome gq-structure g-quadruplex by jmrivort on 2008-01-11 22:38:30 as **** along with 1 person and 1 group bpagano G-quadruplex
  • Folding pathways of hybrid-1 and hybrid-2 G-quadruplex structures.
    Nucleic acids symposium series (2004), No. 52. (2008), pp. 409-410.
    by T Mashimo, Y Sannohe, H Yagi, H Sugiyama
    posted to gq-structure gq-dynamics g-quadruplex by jmrivort on 2008-10-01 22:48:37 as *** along with 1 group G-quadruplex
  • Sequence occurrence and structural uniqueness of a G-quadruplex in the human c-kit promoter
    Nucl. Acids Res. (24 August 2007), gkm609.
    by Alan K Todd, Shozeb M Haider, Gary N Parkinson, Stephen Neidle
    posted to gqarticle gq-dynamics gq-ingenome gq-structure g-quadruplex by jmrivort on 2007-08-31 15:28:00 as ***** along with 2 groups G-quadruplex Supramolecular
  • Molecular modeling and biophysical analysis of the c-MYC NHE-III(1) silencer element.
    J Mol Model (18 December 2007)
    by Derek J Cashman, Robert Buscaglia, Matthew W Freyer, Jamie Dettler, Laurence H Hurley, Edwin A Lewis
    posted to gq-dynamics gq-ingenome gq-structure g-quadruplex by jmrivort on 2007-12-21 14:28:12 as *** along with 1 group G-quadruplex
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