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Tag genome_size [97 articles]

Recent papers classified by the tag genome_size.
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to dmel droso genome_size phylogeny repeats by urgi on 2008-01-04 09:39:58 as ** along with 20 people and 6 groups pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
    BMC Genomics, Vol. 8 (06 July 2007), 218.
    by Clementine Vitte, Olivier Panaud, Hadi Quesneville
    posted to genome_size rice te by urgi on 2007-11-28 16:24:46 as ** along with 2 people timflutre PetrovLab
  • Analysis of Drosophila Species Genome Size and Satellite DNA Content Reveals Significant Differences Among Strains as Well as Between Species
    Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1277-1290.
    by Giovanni Bosco, Paula Campbell, Joao T Leiva-Neto, Therese A Markow
    posted to chromatine droso genome_size by urgi on 2008-01-04 09:36:49 as ** along with 1 person timflutre
  • The mode and tempo of genome size evolution in eukaryotes.
    Genome Res (9 April 2007)
    by Matthew J J Oliver, Dmitri Petrov, David Ackerly, Paul Falkowski, Oscar M M Schofield
    posted to genome_size by lilou on 2007-05-30 14:18:58 as ** along with 4 people and 3 groups aprasad dpollard dchughes diamantis EisenLab G4ID Genetics-of-Gambling
  • The genome size evolution of medaka (Oryzias latipes) and fugu (Takifugu rubripes).
    Genes Genet Syst, Vol. 82, No. 2. (April 2007), pp. 135-144.
    by S Imai, T Sasaki, A Shimizu, S Asakawa, H Hori, N Shimizu
    posted to genome_size by lilou on 2007-05-30 14:26:42 as ** along with 1 person and 1 group jwestbrook King_Lab
  • Genome size and intron size in Drosophila.
    Mol Biol Evol, Vol. 15, No. 6. (June 1998), pp. 770-773.
    by EN Moriyama, DA Petrov, DL Hartl
    posted to drosophila genome_size introns1 by penka to the group Nie on 2006-06-05 06:44:30 as *** along with 2 people brant lilou
  • Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup
    Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 162-167.
    by Matthieu Boulesteix, Michele Weiss, Christian Biemont
    posted to drosophila genome_size by penka to the group Nie on 2006-06-05 06:38:11 as **
  • Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements?
    Mol Biol Evol, Vol. 19, No. 7. (July 2002), pp. 1154-1161.
    by C Vieira, C Nardon, C Arpin, D Lepetit, C Biémont
    posted to drosophila genome_size te by penka to the group Nie on 2006-06-05 06:18:59 as **
  • Microeconomic principles explain an optimal genome size in bacteria.
    Trends Genet, Vol. 21, No. 1. (January 2005), pp. 21-25.
    by JA Ranea, A Grant, JM Thornton, CA Orengo
    posted to genome_size minimal_genome by ana to the group Bioinformatics on 2005-03-19 00:24:22 as **** along with 1 person and 1 group jwm structural_bioinformatics
  • Evidence for DNA loss as a determinant of genome size.
    Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062.
    by DA Petrov, TA Sangster, JS Johnston, DL Hartl, KL Shaw
    posted to drosophila genome_architecture genome_size indels insects by dpollard to the group EisenLab on 2007-11-14 20:59:23 as ** along with 1 person and 1 group penka Nie
  • DNA loss and evolution of genome size in Drosophila.
    Genetica, Vol. 115, No. 1. (May 2002), pp. 81-91.
    by DA Petrov
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 21:11:15 as ** along with 1 person timflutre
  • Mutational equilibrium model of genome size evolution.
    Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544.
    by DA Petrov
    posted to genome_architecture genome_size indels model by dpollard to the group EisenLab on 2007-11-14 21:10:36 as ** along with 3 people operon aprasad timflutre
  • High intrinsic rate of DNA loss in Drosophila.
    Nature, Vol. 384, No. 6607. (28 November 1996), pp. 346-349.
    by DA Petrov, ER Lozovskaya, DL Hartl
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 20:55:15 as ** along with 3 people timflutre urgi skumagai
  • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups.
    Mol Biol Evol, Vol. 15, No. 3. (March 1998), pp. 293-302.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 20:58:27 as ** along with 1 person skumagai
  • Pseudogene evolution and natural selection for a compact genome.
    J Hered, Vol. 91, No. 3. (n 2000), pp. 221-227.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels pseudogene selection by dpollard to the group EisenLab on 2007-11-14 21:01:00 as **
  • Rapid sequence turnover at an intergenic locus in Drosophila.
    Mol Biol Evol, Vol. 21, No. 4. (April 2004), pp. 670-680.
    by ND Singh, DA Petrov
    posted to drosophila genome_architecture genome_size indels noncoding by dpollard to the group EisenLab on 2007-11-14 21:13:48 as read
  • Pseudogene evolution in Drosophila suggests a high rate of DNA loss.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1562-1567.
    by DA Petrov, YC Chao, EC Stephenson, DL Hartl
    posted to drosophila genome_architecture genome_size indels pseudogene by dpollard to the group EisenLab on 2007-11-14 21:12:54 as ** along with 1 person skumagai
  • Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila.
    Gene, Vol. 205, No. 1-2. (31 December 1997), pp. 279-289.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 20:57:45 as ** along with 1 person klo
  • How intron splicing affects the deletion and insertion profile in Drosophila melanogaster.
    Genetics, Vol. 162, No. 3. (November 2002), pp. 1233-1244.
    by SE Ptak, DA Petrov
    posted to drosophila genome_architecture genome_size indels splicing by dpollard to the group EisenLab on 2007-11-14 21:12:02 as **
  • How many genes are there in plants (... and why are they there)?
    Current Opinion in Plant Biology, Vol. 10, No. 2. (April 2007), pp. 199-203.
    by Lieven Sterck, Stephane Rombauts, Klaas Vandepoele, Pierre Rouze, Yves Van de Peer
    posted to genes genome_evolution genome_size plant_genomes by dandaman on 2008-01-29 17:06:45 as **
  • Synergy between sequence and size in Large-scale genomics
    Nature Reviews Genetics, Vol. 6, No. 9. (01 September 2005), pp. 699-708.
    by Ryan T Gregory
    posted to genome_size evolution-of-complexity complexity by cmzmasek on 2008-10-10 22:13:55 as ** along with 2 people aprasad brant
  • A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class aves.
    Evolution Int J Org Evolution, Vol. 56, No. 1. (January 2002), pp. 121-130.
    by TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:22:47 as **
  • Nucleotypic effects without nuclei: genome size and erythrocyte size in mammals.
    Genome, Vol. 43, No. 5. (October 2000), pp. 895-901.
    by TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:24:41 as **
  • Insertion-deletion biases and the evolution of genome size.
    Gene, Vol. 324 (7 January 2004), pp. 15-34.
    by TR Gregory
    posted to evolution genome_size by brant on 2007-11-08 20:19:09 as ** along with 1 person aprasad
  • Temporal control of DNA replication and the adaptive value of chromatin diminution in copepods.
    J Exp Zool, Vol. 291, No. 4. (15 December 2001), pp. 310-316.
    by GA Wyngaard, TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:23:39 as **
  • Investigation of Loss and Gain of Introns in the Compact Genomes of Pufferfishes (fugu and Tetraodon).
    Mol Biol Evol (17 December 2007)
    by Yong-Hwee H Loh, Sydney Brenner, Byrappa Venkatesh
    posted to evolution genome_size intron by brant on 2007-12-30 22:15:14 as ** along with 1 person dchughes
  • Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma.
    Biol Rev Camb Philos Soc, Vol. 76, No. 1. (February 2001), pp. 65-101.
    by TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:24:03 as **
  • Evolutionary implications of the relationship between genome size and body size in flatworms and copepods.
    Heredity, Vol. 84 ( Pt 2) (February 2000), pp. 201-208.
    by TR Gregory, PD Hebert, J Kolasa
    posted to development evolution genome_size by brant on 2007-11-08 20:25:24 as **
  • Genome size and developmental complexity.
    Genetica, Vol. 115, No. 1. (May 2002), pp. 131-146.
    by TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:19:52 as **
  • Genome size and developmental parameters in the homeothermic vertebrates.
    Genome, Vol. 45, No. 5. (October 2002), pp. 833-838.
    by TR Gregory
    posted to development evolution genome_size by brant on 2007-11-08 20:19:31 as **
  • Genome size and developmental complexity
    Genetica, Vol. 115, No. 1. (1 May 2002), pp. 131-146.
    by Ryan
    posted to development evolution genome_size by brant on 2007-11-08 20:27:20 as **
  • The modulation of DNA content: proximate causes and ultimate consequences.
    Genome Res, Vol. 9, No. 4. (April 1999), pp. 317-324.
    by TR Gregory, PD Hebert
    posted to development evolution genome_size by brant on 2007-11-08 20:26:15 as **
  • Selection on Major Components of Angiosperm Genomes
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 484-486.
    by Brandon S Gaut, Jeffrey Ross-Ibarra
    posted to angiosperm evolution genome genome_size selection by biomcgary on 2008-04-25 17:48:03 as ** along with 4 people and 1 group aprasad echinotrix timflutre ArtemPankin Khavkin's lab
  • The Evolution of the Genome
    (22 December 2004)
    by Ryan T Gregory
    posted to book genome genome_evolution genome_size by aprasad on 2005-09-12 21:48:39 as ** along with 2 people matzke dayjm
  • Large-scale structure of genomic methylation patterns.
    Genome Res (19 December 2005)
    by Robert A A Rollins, Fatemeh Haghighi, John R R Edwards, Rajdeep Das, Michael Q Q Zhang, Jingyue Ju, Timothy H H Bestor
    posted to genome_evolution genome_size methylation by aprasad on 2006-01-03 18:14:04 as *** along with 3 people and 1 group kaspermunch tabu epigenetics Bioinformatics
  • Genome sizes in afrotheria, xenarthra, euarchontoglires, and laurasiatheria.
    J Hered, Vol. 96, No. 5. (t 2005), pp. 485-493.
    by CA Redi, H Zacharias, S Merani, M Oliveira-Miranda, M Aguilera, M Zuccotti, S Garagna, E Capanna
    posted to bat genome_size whole_genome by aprasad on 2006-03-28 16:45:05 as **
  • The evolution of genome size in ants
    BMC Evolutionary Biology, Vol. 8 (26 February 2008), 64.
    by Neil D Tsutsui, Andrew V Suarez, Joseph C Spagna, Spencer J Johnston
    posted to evolution genome_size nucleotypic_effect by aprasad on 2008-05-09 17:59:11 as **
  • Heterogeneity in CsCl buoyant densities of chiropteran DNA.
    Biochem Genet, Vol. 6, No. 1. (February 1972), pp. 27-30.
    by FE Arrighi, WZ Lidicker, M Mandel, J Bergendahl
    posted to bat genome_size by aprasad on 2006-03-29 16:11:56 as **
  • Evolution of genome size: a phylogenetic test of the DNA loss hypothesis.
    Genetika, Vol. 43, No. 3. (March 2007), pp. 427-429.
    by MR Pie
    posted to dna_loss genome_size by aprasad on 2007-05-14 01:28:14 as **
  • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1895-1900.
    by EJ Pritham, C Feschotte
    posted to bat genome_size repeats transposon whole_genome by aprasad on 2007-08-04 16:19:20 as ** along with 1 person nirwin
  • From pixels to picograms: a beginners' guide to genome quantification by Feulgen image analysis densitometry.
    J Histochem Cytochem, Vol. 50, No. 6. (June 2002), pp. 735-749.
    by DC Hardie, TR Gregory, PD Hebert
    posted to densitometry feulgen genome_size methods by aprasad on 2007-08-03 16:05:14 as **
  • Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
    Journal of Theoretical Biology, Vol. 244, No. 4. (21 February 2007), pp. 621-630.
    by Carole Knibbe, Olivier Mazet, Fabien Chaudier, Jean-Michel Fayard, Guillaume Beslon
    posted to evolution genome_size indel mutation selection by aprasad on 2007-08-28 13:43:46 as ** along with 1 person timflutre
  • Flow Cytometric and Microscopic Analysis of the Effect of Tannic Acid on Plant Nuclei and Estimation of DNA Content.
    Ann Bot (Lond) (4 July 2006)
    by João Loureiro, Eleazar Rodriguez, Jaroslav Dolezel, Conceição Santos
    posted to genome_size methods by aprasad on 2006-07-10 15:46:24 as **
  • Variation in genome size of argasid and ixodid ticks.
    Insect Biochem Mol Biol, Vol. 37, No. 5. (May 2007), pp. 399-408.
    by NS Geraci, J Spencer Johnston, J Paul Robinson, SK Wikel, CA Hill
    posted to evolution genome_size variation by aprasad on 2007-04-30 13:09:29 as **
  • Genomic Convergence toward Diploidy in Saccharomyces cerevisiae.
    PLoS Genet, Vol. 2, No. 9. (22 September 2006)
    by Aleeza C C Gerstein, Hye-Jung E J Chun, Alex Grant, Sarah P P Otto
    posted to genome_evolution genome_size yeast by aprasad on 2006-10-04 19:13:59 as **
  • Amphipod genome sizes: first estimates for Arctic species reveal genomic giants.
    Genome, Vol. 50, No. 2. (February 2007), pp. 151-158.
    by DJ Rees, F Dufresne, H Glémet, C Belzile
    posted to amphipod genome_size by aprasad on 2007-06-11 13:47:04 as **
  • Phylogenetic insights into the pace and pattern of plant genome size evolution.
    Genome dynamics, Vol. 4 (2008), pp. 57-68.
    by CE Grover, JS Hawkins, JF Wendel
    posted to review plant genome_size by aprasad on 2008-09-02 16:42:40 as **
  • Evolution of genome size in fishes: a phylogenetic test of the Hinegardner and Rosen hypothesis.
    Genetica (25 October 2006)
    by Marcio R Pie, Rodrigo A Torres, Diego M Brito
    posted to fish genome_size by aprasad on 2006-11-13 20:30:40 as **
  • Genome size is negatively correlated with effective population size in ray-finned fish.
    Trends Genet (4 October 2005)
    by Soojin Yi, J Todd T Streelman
    posted to fish genome_size by aprasad on 2005-10-25 16:14:53 as **
  • notes Cladogenetic correlates of genomic expansions in the recent evolution of actinopterygiian fishes.
    Proc Biol Sci, Vol. 273, No. 1582. (7 January 2006), pp. 33-38.
    by JE Mank, JC Avise
    posted to genome_size speciation by aprasad on 2006-04-28 15:09:18 as **
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