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Tag geneexpression [92 articles]

Recent papers classified by the tag geneexpression.
  • Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Itai Yanai, Ryan L Baugh, Jessica J Smith, Casey Roehrig, Shai S Shen-Orr, Julia M Claggett, Andrew A Hill, Donna K Slonim, Craig P Hunter
    posted to geneexpression module regulatory by zwang on 2008-02-17 10:41:25 as ** along with 1 person roys
  • Prediction of phenotype and gene expression for combinations of mutations
    Mol Syst Biol, Vol. 3 (27 March 2007)
    by Gregory W Carter, Susanne Prinz, Christine Neou, Patrick J Shelby, Bruz Marzolf, Vesteinn Thorsson, Timothy Galitski
  • Inferring condition-specific transcription factor function from DNA binding and gene expression data
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Rachel P Mccord, Michael F Berger, Anthony A Philippakis, Martha L Bulyk
    posted to dna geneexpression transcription by zwang on 2007-04-17 17:26:26 as **
  • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Ben Lehner
  • Genetic analysis of genome-wide variation in human gene expression.
    Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747.
    by M Morley, CM Molony, TM Weber, JL Devlin, KG Ewens, RS Spielman, VG Cheung
  • Interferon-gamma induces expression of the interleukin 2 receptor gene in human monocytes.
    Eur J Immunol, Vol. 17, No. 1. (January 1987), pp. 153-156.
    posted to geneexpression il2ra by vplagnol on 2008-02-15 11:38:02 as **
  • On the design and analysis of gene expression studies in human populations
    Nature Genetics, Vol. 39, No. 7., pp. 807-808.
    by Joshua M Akey, Shameek Biswas, Jeffrey T Leek, John D Storey
    posted to geneexpression by vplagnol on 2007-06-29 13:46:24 as ** along with 1 person lesander
  • Gene expression variation and expression quantitative trait mapping of human chromosome 21 genes
    Hum. Mol. Genet., Vol. 14, No. 23. (1 December 2005), pp. 3741-3749.
    by Samuel Deutsch, Robert Lyle, Emmanouil T Dermitzakis, Homa Attar, Lakshman Subrahmanyan, Corinne Gehrig, Leila Parand, Maryline Gagnebin, Jacques Rougemont, Victor C Jongeneel, Stylianos E Antonarakis
    posted to geneexpression by vplagnol on 2007-08-31 10:08:43 as ** along with 3 people qfwills ashandanj qmwwallace
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D Storey, Iliana Avila-Campillo, Mark J Kruger, Jason M Johnson, Carol A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A Drake, Aldons J Lusis, Ryan C Smith, Peter P Guengerich, Stephen C Strom, Erin Schuetz, Thomas H Rushmore, Roger Ulrich
  • Genetics of gene expression and its effect on disease
    Nature, Vol. 452 (16 March 2008), pp. 423-428.
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
  • A Versatile Assay for High-Throughput Gene Expression Profiling on Universal Array Matrices
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 878-885.
    by Jian-Bing Fan, Joanne M Yeakley, Marina Bibikova, Eugene Chudin, Eliza Wickham, Jing Chen, Dennis Doucet, Philippe Rigault, Baohong Zhang, Richard Shen, Celeste Mcbride, Hai-Ri Li, Xiang-Dong Fu, Arnold Oliphant, David L Barker, Mark S Chee
    posted to dasl geneexpression by vplagnol on 2008-01-08 12:26:23 as ** along with 1 person stsaft
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
  • Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
    PLoS Genet, Vol. 4, No. 2. (29 February 2008), e1000006.
    by David Serre, Scott Gurd, Bing Ge, Robert Sladek, Donna Sinnett, Eef Harmsen, Marina Bibikova, Eugene Chudin, David L Barker, Todd Dickinson, Jian-Bing Fan, Thomas J Hudson
  • notes Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma
    Nature, Vol. 448 (04 July 2007), pp. 470-473.
    by Miriam F Moffatt, Michael Kabesch, Liming Liang, Anna L Dixon, David Strachan, Simon Heath, Martin Depner, Andrea von Berg, Albrecht Bufe, Ernst Rietschel, Andrea Heinzmann, Burkard Simma, Thomas Frischer, Saffron AG Willis-Owen, Kenny CC Wong, Thomas Illig, Christian Vogelberg, Stephan K Weiland, Erika von Mutius, Gonçalo R Abecasis, Martin Farrall, Ivo G Gut, Mark G Lathrop, William OC Cookson
  • Direct multiplexed measurement of gene expression with color-coded probe pairs.
    Nat Biotechnol (17 February 2008)
    by Gary K K Geiss, Roger E E Bumgarner, Brian Birditt, Timothy Dahl, Naeem Dowidar, Dwayne L L Dunaway, H Perry P Fell, Sean Ferree, Renee D D George, Tammy Grogan, Jeffrey J J James, Malini Maysuria, Jeffrey D D Mitton, Paola Oliveri, Jennifer L L Osborn, Tao Peng, Amber L L Ratcliffe, Philippa J J Webster, Eric H H Davidson, Leroy Hood
  • Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1208-1216.
    by Harald H Goring, Joanne E Curran, Matthew P Johnson, Thomas D Dyer, Jac Charlesworth, Shelley A Cole, Jeremy B Jowett, Lawrence J Abraham, David L Rainwater, Anthony G Comuzzie, Michael C Mahaney, Laura Almasy, Jean W Maccluer, Ahmed H Kissebah, Gregory R Collier, Eric K Moses, John Blangero
  • Maternal and Paternal Chromosomes 7 Show Differential Methylation of Many Genes in Lymphoblast DNA
    Genomics, Vol. 73, No. 1. (1 April 2001), pp. 1-9.
    by Katariina Hannula, Marita Lipsanen-Nyman, Stephen W Scherer, Christer Holmberg, Pia Hoglund, Juha Kere
    posted to geneexpression by vplagnol on 2007-08-31 10:12:02 as ** along with 1 person qmwwallace
  • A Method for High-Throughput Gene Expression Signature Analysis
    Genome Biology, Vol. 7 (19 July 2006), R61.
    by David Peck, Emily D Crawford, Kenneth N Ross, Kimberly Stegmaier, Todd R Golub, Justin Lamb
    posted to dasl geneexpression luminex by vplagnol on 2008-01-08 12:21:23 as ** along with 1 person jfr
  • A survey of genetic and epigenetic variation affecting human gene expression
    Physiol. Genomics, Vol. 16, No. 2. (15 January 2004), pp. 184-193.
    by Tomi Pastinen, Robert Sladek, Scott Gurd, Alya'a Sammak, Bing Ge, Pierre Lepage, Karine Lavergne, Amelie Villeneuve, Tiffany Gaudin, Helena Brandstrom, Allon Beck, Andrei Verner, Jade Kingsley, Eef Harmsen, Damian Labuda, Kenneth Morgan, Marie-Claude Vohl, Anna K Naumova, Daniel Sinnett, Thomas J Hudson
  • A genome-wide association study of global gene expression
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207.
    by Anna L Dixon, Liming Liang, Miriam F Moffatt, Wei Chen, Simon Heath, Kenny CC Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, Mark G Lathrop, Gonçalo R Abecasis, William OC Cookson
  • Differentially methylated alleles in a distinct region of the human interleukin-1alpha promoter are associated with allele-specific expression of IL-1alpha in CD4+ T cells
    Blood, Vol. 108, No. 7. (1 October 2006), pp. 2143-2149.
    by Johanna G van Rietschoten, Kitty F Verzijlbergen, Sonja I Gringhuis, Tineke C Kraan, Jean-Pierre Bayley, Eddy A Wierenga, Peter A Jones, Jan M Kooter, Cor L Verweij
    posted to geneexpression by vplagnol on 2007-08-21 17:59:50 as **
  • Profiling alternatively spliced mRNA isoforms for prostate cancer classification
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Chaolin Zhang, Hai R Li, Jian B Fan, Jessica W Rodriguez, Tracy Downs, Xiang D Fu, Michael Zhang
    posted to dasl geneexpression by vplagnol on 2008-01-07 01:28:43 as **
  • Mapping common regulatory variants to human haplotypes
    Hum. Mol. Genet., Vol. 14, No. 24. (15 December 2005), pp. 3963-3971.
    by Tomi Pastinen, Bing Ge, Scott Gurd, Tiffany Gaudin, Carole Dore, Mathieu Lemire, Pierre Lepage, Eef Harmsen, Thomas J Hudson
  • Cis-acting regulatory variation in the human genome.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 647-650.
    by T Pastinen, TJ Hudson
    posted to ase geneexpression by vplagnol on 2008-06-02 16:59:32 as ** along with 2 people qfwills mimulus_99
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
  • Clonal evolution in human lymphoblast cultures.
    Am J Hum Genet, Vol. 42, No. 5. (May 1988), pp. 742-747.
    by BR Migeon, J Axelman, G Stetten
    posted to geneexpression by vplagnol on 2007-08-31 10:09:59 as ** along with 1 person qmwwallace
  • Two-Dimensional Transcriptome Profiling: Identification of Messenger RNA Isoform Signatures in Prostate Cancer from Archived Paraffin-Embedded Cancer Specimens
    Cancer Res, Vol. 66, No. 8. (15 April 2006), pp. 4079-4088.
    by Hai-Ri Li, Jessica Wang-Rodriguez, Murlidharan T Nair, Joanne M Yeakley, Young-Soo Kwon, Marina Bibikova, Christina Zheng, Lixin Zhou, Kui Zhang, Tracy Downs, Xiang-Dong Fu, Jian-Bing Fan
    posted to dasl geneexpression by vplagnol on 2008-01-07 01:30:24 as ** along with 2 people jfr cberry
  • Newly identified genetic risk variants for celiac disease related to the immune response
    Nature Genetics, Vol. 40, No. 4. (02 March 2008), pp. 395-402.
    by Karen A Hunt, Alexandra Zhernakova, Graham Turner, Graham AR Heap, Lude Franke, Marcel Bruinenberg, Jihane Romanos, Lotte C Dinesen, Anthony W Ryan, Davinder Panesar, Rhian Gwilliam, Fumihiko Takeuchi, William M Mclaren, Geoffrey KT Holmes, Peter D Howdle, Julian RF Walters, David S Sanders, Raymond J Playford, Gosia Trynka, Chris JJ Mulder, Luisa M Mearin, Wieke HM Verbeek, Valerie Trimble, Fiona M Stevens, Colm O'Morain, Nicholas P Kennedy, Dermot Kelleher, Daniel J Pennington, David P Strachan, Wendy L Mcardle, Charles A Mein, Martin C Wapenaar, Panos Deloukas, Ralph Mcginnis, Ross Mcmanus, Cisca Wijmenga, David A van Heel
    posted to celiac geneexpression by vplagnol on 2008-06-02 12:42:43 as **
  • Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping.
    Genome Res, Vol. 17, No. 1. (January 2007), pp. 82-87.
    by JT Forton, IA Udalova, S Campino, KA Rockett, J Hull, DP Kwiatkowski
    posted to geneexpression by vplagnol on 2007-09-27 18:43:29 as ** along with 1 person emarker
  • Widespread Monoallelic Expression on Human Autosomes
    Science, Vol. 318, No. 5853. (16 November 2007), pp. 1136-1140.
    by Alexander Gimelbrant, John N Hutchinson, Benjamin R Thompson, Andrew Chess
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nature methods, Vol. in press (30 May 2008)
    by Ali Mortazavi, Brian AA Williams, Kenneth Mccue, Lorian Schaeffer, Barbara Wold
  • Common genetic variants account for differences in gene expression among ethnic groups.
    Nat Genet, Vol. 39 (7 January 2007), pp. 226-231.
    by Richard S Spielman, Laurel A Bastone, Joshua T Burdick, Michael Morley, Warren J Ewens, Vivian G Cheung
  • Influence of human genome polymorphism on gene expression.
    Hum Mol Genet, Vol. 15 Spec No 1 (15 April 2006)
    by T Pastinen, B Ge, TJ Hudson
  • Molecular Network and Chromosomal Clustering of Genes Involved in Synaptic Plasticity in the Hippocampus
    J. Biol. Chem., Vol. 281, No. 40. (6 October 2006), pp. 30195-30211.
    by Chang S Park, Ruomu Gong, Joshua Stuart, Shao-Jun Tang
    posted to clustering geneexpression networkestimation by shigepong on 2008-08-16 07:07:23 as ****
  • Combining transcriptional datasets using the generalized singular value decomposition
    BMC Bioinformatics, Vol. 9 (08 August 2008), 335.
    by Andreas W Schreiber, Neil J Shirley, Rachel A Burton, Geoffrey B Fincher
  • Using noise to probe and characterize gene circuits.
    Proceedings of the National Academy of Sciences of the United States of America (31 July 2008)
    by Chris D D Cox, James M M McCollum, Michael S S Allen, Roy D D Dar, Michael L L Simpson
  • Control of stochasticity in eukaryotic gene expression.
    Science, Vol. 304, No. 5678. (18 June 2004), pp. 1811-1814.
    by JM Raser, EK O'Shea
  • Gene expression: one size does not fit all
    Nature Methods, Vol. 3, No. 5., pp. 401-408.
    by Laura Bonetta
    posted to geneexpression genetics by madhadron on 2006-04-29 20:01:13 as ** along with 1 person srfairclough
  • Mobility of Min-proteins in Escherichia coli measured by fluorescence correlation spectroscopy
    Phys. Biol., Vol. 3, No. 4. (December 2006), 255.
    posted to bacteria cellcycle ecoli geneexpression by madhadron on 2007-01-04 15:18:47 as **
  • Genome-wide exploration of the drug action of capreomycin on Mycobacterium tuberculosis using Affymetrix oligonucleotide GeneChips.
    J Infect (3 July 2006)
    by Li M M Fu, Thomas M M Shinnick
  • Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression
    Phys. Biol., Vol. 3, No. 4. (December 2006), 274.
    by Marc R Roussel, Rui Zhu
    posted to geneexpression by madhadron on 2007-01-04 15:18:37 as **
  • Adaptive response of a gene network to environmental changes by fitness-induced attractor selection.
    PLoS ONE, Vol. 1 (2006)
    by A Kashiwagi, I Urabe, K Kaneko, T Yomo
    posted to geneexpression networks by madhadron on 2007-04-02 18:07:34 as ** along with 1 person jjray
  • Computer-aided design of modular protein devices: Boolean AND gene activation
    Phys. Biol., Vol. 3, No. 4. (December 2006), 295.
    by H Salis, YN Kaznessis
    posted to geneexpression genetics by madhadron on 2007-01-04 15:20:34 as **
  • Understanding the action of INH on a highly INH-resistant Mycobacterium tuberculosis strain using Genechips.
    Tuberculosis (Edinb) (1 August 2006)
    by Li M M Fu, Thomas M M Shinnick
    posted to geneexpression isoniazid mtuberculosis mycobacteria by madhadron on 2006-12-08 03:19:24 as ****
  • Exploring drug action on Mycobacterium tuberculosis using affymetrix oligonucleotide genechips.
    Tuberculosis (Edinb), Vol. 86, No. 2. (March 2006), pp. 134-143.
    by LM Fu
    posted to antibiotics geneexpression mtuberculosis mycobacteria by madhadron on 2006-12-08 03:21:56 as ****
  • Predicting stochastic gene expression dynamics in single cells.
    Proc Natl Acad Sci U S A, Vol. 103, No. 19. (9 May 2006), pp. 7304-7309.
  • Simultaneously monitoring gene expression kinetics and genetic noise in single cells by optical well arrays.
    Anal Chem, Vol. 76, No. 21. (1 November 2004), pp. 6282-6286.
    by Y Kuang, I Biran, DR Walt
    posted to geneexpression noise by madhadron on 2007-10-12 13:34:49 as *** along with 1 person rklancer
  • Systems perspectives on mRNA processing
    Cell Res, Vol. 17, No. 7. (0000), pp. 581-590.
    by Adrienne E Mckee, Pamela A Silver
    posted to geneexpression rna by Jporci on 2007-09-15 20:35:57 as read
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