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Tag genecircuits [43 articles]

Recent papers classified by the tag genecircuits.
  • Noise Propagation in Gene Networks
    Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969.
    by Juan M Pedraza, Alexander van Oudenaarden
    posted to avano_lab expression gene genecircuits geneticnetworks genevariation networks noise stochastic syntheticbiology by samal on 2006-08-11 09:49:05 as ** along with 12 people rklancer snuppepuppan JKelly555 madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
  • Limitations of quantitative gene regulation models: a case study.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395.
    by PM Kim, B Tidor
    posted to engineered_degradation genecircuits modelling by rklancer on 2005-10-02 17:21:31 as *** along with 4 people monod wnpx mmt lambda
  • notes Enhancement of cellular memory by reducing stochastic transitions
    Nature, Vol. 435, No. 7039., pp. 228-232.
    by Murat Acar, Attila Becskei, Alexander v van Oudenaarden
    posted to avano_lab dynamics galactosesignalling genecircuits hysteresis noise yeast by rklancer on 2005-05-16 16:33:07 as *** along with 5 people and 1 group crmind balicea dbikard mhucka kfm9876 SynBioSys
  • Reconstruction of genetic circuits
    Nature, Vol. 438, No. 7067., pp. 443-448.
    by David Sprinzak, Michael B Elowitz
    posted to genecircuits synthetic_biology by rklancer on 2005-11-25 20:20:47 as read along with 6 people monod tuck jmeppley avery dbikard austin
  • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
    Cell, Vol. 113, No. 5. (30 May 2003), pp. 597-607.
    by MR Atkinson, MA Savageau, JT Myers, AJ Ninfa
    posted to dynamics genecircuits multistability oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:37:48 as **** along with 1 person balabu
  • Design of gene circuits: lessons from bacteria.
    Nat Rev Genet, Vol. 5, No. 1. (January 2004), pp. 34-42.
    by ME Wall, WS Hlavacek, MA Savageau
    posted to genecircuits sbw_designstrategies synthetic_biology by rklancer on 2005-05-21 17:49:58 as **** along with 5 people and 2 groups icases monod dbikard jjray grahamc TNT SynBioSys
  • Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability.
    Curr Opin Cell Biol, Vol. 14, No. 2. (April 2002), pp. 140-148.
    by JE Ferrell
    posted to dynamics genecircuits multistabiity reviews signallingcircuits synthetic_biology by rklancer on 2005-05-25 16:58:31 as read along with 6 people lna monod holan bayesian balicea jbchang
  • Negative autoregulation speeds the response times of transcription networks.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793.
    by N Rosenfeld, MB Elowitz, U Alon
    posted to designprinciples genecircuits by rklancer on 2005-12-05 04:53:07 as ** along with 3 people jjray bayesian margaritis
  • Design of artificial cell-cell communication using gene and metabolic networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 8. (24 February 2004), pp. 2299-2304.
    by T Bulter, SG Lee, WW Wong, E Fung, MR Connor, JC Liao
    posted to genecircuits metabolic quorum sbw_systemreports synthetic_biology by rklancer on 2004-11-12 02:17:30 along with 2 people and 2 groups camster dbikard dbk-lab SynBioSys
  • A synthetic gene–metabolic oscillator
    Nature, Vol. 435, No. 7038., pp. 118-122.
    by Eileen Fung, Wilson W Wong, Jason K Suen, Thomas Bulter, Sun-Gu Lee, James C Liao
    posted to dynamics genecircuits metabolism oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:17:29 as read along with 4 people bayesian alexg balabu johncumbers
  • An excitable gene regulatory circuit induces transient cellular differentiation
    Nature, Vol. 440, No. 7083., pp. 545-550.
    by Gurol M Suel, Jordi Garcia-Ojalvo, Louisa M Liberman, Michael B Elowitz
    posted to dynamics genecircuits by rklancer on 2006-03-29 04:38:58 as ** along with 10 people and 1 group alexg madhadron balabu nickluscombe comb dbikard mhucka margaritis paurue jjray EBI-regulation
  • Engineering gene networks to emulate Drosophila embryonic pattern formation.
    PLoS Biol, Vol. 3, No. 3. (March 2005)
    by M Isalan, C Lemerle, L Serrano
    posted to development drosophila dynamics genecircuits synthetic_biology by rklancer on 2005-03-30 03:56:43 as read along with 2 people and 2 groups indigoviolet livingthingdan EisenLab livingthing
  • Structure and function of the feed-forward loop network motif.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985.
    by S Mangan, U Alon
    posted to genecircuits motifs by rklancer on 2005-05-01 21:13:23 as read along with 12 people and 3 groups camster korakot zqshen jstajic jjray alexg balicea ddahlem jtaylor gcalda marck hannahrajasingh Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Designer gene networks: Towards fundamental cellular control.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 207-220.
    by Jeff Hasty, Farren Isaacs, Milos Dolnik, David McMillen, J. J. J Collins
    posted to collins_lab dynamics genecircuits sbw_designstrategies sbw_proposedsystems synthetic_biology by rklancer on 2005-05-18 05:09:51 as ****
  • Programmable cells: interfacing natural and engineered gene networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 22. (1 June 2004), pp. 8414-8419.
    by H Kobayashi, M Kaern, M Araki, K Chung, TS Gardner, CR Cantor, JJ Collins
    posted to collins_lab genecircuits sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:43:57 as read along with 3 people dbikard snowcrash austin
  • Optimizing genetic circuits by global sensitivity analysis.
    Biophys J, Vol. 87, No. 4. (October 2004), pp. 2195-2202.
    by XJ Feng, S Hooshangi, D Chen, G Li, R Weiss, H Rabitz
    posted to genecircuits synthetic_biology by rklancer on 2005-08-29 23:07:52 as ** along with 1 person dbikard
  • notes Prediction and measurement of an autoregulatory genetic module.
    Proc Natl Acad Sci U S A, Vol. 100, No. 13. (24 June 2003), pp. 7714-7719.
    by FJ Isaacs, J Hasty, CR Cantor, JJ Collins
    posted to collins_lab genecircuits noise sbw_systemreports synthetic_biology by rklancer on 2005-03-20 17:45:44 as read along with 2 people snuppepuppan johncumbers
  • Spatiotemporal control of gene expression with pulse-generating networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6355-6360.
    by S Basu, R Mehreja, S Thiberge, MT Chen, R Weiss
    posted to dynamics genecircuits sbw_systemreports synthetic_biology by rklancer on 2005-05-10 16:25:25 as read
  • Gene regulation at the single-cell level.
    Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965.
    by N Rosenfeld, JW Young, U Alon, PS Swain, MB Elowitz
    posted to genecircuits by rklancer on 2005-05-18 02:40:49 as ** along with 13 people snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis csgillespie vladimirov
  • Disorders in cell circuitry during multistage carcinogenesis: the role of homeostasis.
    Carcinogenesis, Vol. 21, No. 5. (May 2000), pp. 857-864.
    by IB Weinstein
    posted to cancer dynamics genecircuits synergistic_mutations by rklancer on 2005-10-30 04:50:29 as ***
  • Transcriptional control: rheostat converted to on/off switch.
    Mol Cell, Vol. 6, No. 3. (September 2000), pp. 723-728.
    by FM Rossi, AM Kringstein, A Spicher, OM Guicherit, HM Blau
    posted to genecircuits threshold by rklancer on 2005-05-05 20:23:53 as **
  • Transcription control reprogramming in genetic backup circuits
    Nature Genetics, Vol. 37, No. 3. (20 February 2005), pp. 295-299.
    by Ran Kafri, Arren Bar-Even, Yitzhak Pilpel
    posted to evolution genecircuits robustness yeast by rklancer on 2005-06-11 02:30:18 as ***** along with 3 people and 1 group nickluscombe aswin jpoyatos EBI-regulation
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to dynamics ecoli engineered_degradation genecircuits oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-02 02:23:00 as read along with 12 people mattions dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar Borelli
  • The use of oscillatory signals in the study of genetic networks.
    Proc Natl Acad Sci U S A (9 May 2005)
    by Ovidiu Lipan, Wing H H Wong
    posted to dynamics frequencydomain genecircuits oscillators by rklancer on 2005-05-17 15:49:30 as read along with 1 person jjray
  • Synchronizing genetic oscillators by signaling molecules.
    J Biol Rhythms, Vol. 20, No. 3. (June 2005), pp. 257-269.
    by R Wang, L Chen
    posted to dynamics genecircuits noise oscillators sbw_analysis synthetic_biology by rklancer on 2005-05-28 21:26:35 as ****
  • Design principles for elementary gene circuits: Elements, methods, and examples.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 142-159.
    by Michael A. A Savageau
    posted to designprinciples genecircuits mathbio by rklancer on 2005-05-17 06:10:00 as ** along with 3 people and 1 group macowell monod jjray BUiGEM
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
    by P François, V Hakim
    posted to computational evolution genecircuits sbw_designstrategies synthetic_biology by rklancer on 2005-05-18 21:33:44 as *** along with 5 people eldan monod dbikard discreteonyxorb mjoach
  • Combinatorial synthesis of genetic networks.
    Science, Vol. 296, No. 5572. (24 May 2002), pp. 1466-1470.
    by CC Guet, MB Elowitz, W Hsing, S Leibler
    posted to engineered_degradation genecircuits sbw_designstrategies sbw_systemreports synthetic_biology by rklancer on 2005-05-18 05:00:43 as read along with 5 people tmmurali monod jjray johncumbers dbikard
  • Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks
    Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383.
    by Diego d di Bernardo, Michael J Thompson, Timothy S Gardner, Sarah E Chobot, Erin L Eastwood, Andrew P Wojtovich, Sean J Elliott, Scott E Schaus, James J Collins
    posted to collins_lab genecircuits mni network_identification yeast by rklancer on 2005-06-03 16:09:11 as ***** along with 6 people and 2 groups snuppepuppan kentsis mjt rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
  • A synthetic multicellular system for programmed pattern formation
    Nature, Vol. 434, No. 7037., pp. 1130-1134.
    by Subhayu Basu, Yoram Gerchman, Cynthia H Collins, Frances H Arnold, Ron Weiss
    posted to genecircuits luxoperon sbw_systemreports self_organization synthetic_biology by rklancer on 2005-05-01 20:51:30 as read along with 1 person dbikard
  • Plasticity of the cis-Regulatory Input Function of a Gene.
    PLoS Biol, Vol. 4, No. 4. (April 2006)
    by AE Mayo, Y Setty, S Shavit, A Zaslaver, U Alon
    posted to evolution genecircuits by rklancer on 2006-04-12 04:02:41 as ** along with 4 people and 1 group stevanspringer tmmurali bayesian discreteonyxorb FAB-lab
  • Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1633-1648.
    by A Arkin, J Ross, HH McAdams
    posted to arkin_lab dynamics genecircuits noise stochastic_dynamics by rklancer on 2005-05-10 20:07:54 as ** along with 3 people biplabbose ner25 khachsar
  • notes MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision.
    Proc Natl Acad Sci U S A (12 August 2005)
    by Robert J J Johnston, Sarah Chang, John F F Etchberger, Christopher O O Ortiz, Oliver Hobert
    posted to celegans development dynamics genecircuits genetic_dissection microrna multistability rna by rklancer on 2005-08-29 22:16:19 as ***** along with 6 people and 1 group tharris tardigrade mtagaya maralena bootsy balabu C. elegans / WormBase
  • Circuit topology and the evolution of robustness in two-gene circadian oscillators.
    Proc Natl Acad Sci U S A (8 August 2005)
    by Andreas Wagner
    posted to circadianclock evolution genecircuits oscillators robustness by rklancer on 2005-08-16 19:58:15 as **** along with 3 people monod entropy eva_diva
  • Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.
    Proc Natl Acad Sci U S A, Vol. 102, No. 10. (8 March 2005), pp. 3581-3586.
    by S Hooshangi, S Thiberge, R Weiss
    posted to genecircuits modelling noise sbw_systemreports synthetic_biology ultrasensitivity by rklancer on 2005-03-15 04:15:04 as *** along with 4 people JKelly555 madhadron johncumbers melting
  • Nonlinear protein degradation and the function of genetic circuits.
    Proc Natl Acad Sci U S A (22 June 2005)
    by Nicolas E E Buchler, Ulrich Gerland, Terence Hwa
    posted to genecircuits by rklancer on 2005-06-25 05:09:06 as ** along with 2 people dbikard discreteonyxorb
  • Expression of a cascading genetic network within liposomes.
    FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 387-390.
    by K Ishikawa, K Sato, Y Shima, I Urabe, T Yomo
    posted to genecircuits synthetic_biology by rklancer on 2005-05-02 00:59:56 as ** along with 1 person satsumakenji
  • Principles of cell-free genetic circuit assembly.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12672-12677.
    by V Noireaux, R Bar-Ziv, A Libchaber
    posted to genecircuits synthetic_biology by rklancer on 2004-12-19 17:07:23 along with 2 people tempestblue grahamc
  • Frequency domain analysis of noise in autoregulated gene circuits.
    Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4551-4556.
    by ML Simpson, CD Cox, GS Sayler
    posted to frequencydomain genecircuits noise by rklancer on 2005-05-18 03:28:51 as ** along with 4 people margaritis kfm9876 dylanwalker marcio
  • Motifs, control, and stability.
    PLoS Biol, Vol. 3, No. 11. (November 2005)
    by J Doyle, M Csete
    posted to dynamics genecircuits by rklancer on 2005-11-29 02:40:44 as ** along with 5 people monod bayesian balicea javierFellow entropy
  • Tuning genetic control through promoter engineering.
    Proc Natl Acad Sci U S A (25 August 2005)
    by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos
    posted to genecircuits promoters synthetic_biology transcription by rklancer on 2005-08-29 23:30:03 as read along with 1 person JKelly555
  • Directed evolution of a genetic circuit.
    Proc Natl Acad Sci U S A, Vol. 99, No. 26. (24 December 2002), pp. 16587-16591.
    by Y Yokobayashi, R Weiss, FH Arnold
    posted to arnold_lab directed_evolution evolution genecircuits sbw_designstrategies sbw_systemreports synthetic_biology by rklancer on 2005-05-18 05:06:58 as read along with 1 person JKelly555
  • Gene network shaping of inherent noise spectra
    Nature, Vol. 439, No. 7076., pp. 608-611.
    by DW Austin, MS Allen, JM Mccollum, RD Dar, JR Wilgus, GS Sayler, NF Samatova, CD Cox, ML Simpson
    posted to biochemicalnoise ecoli genecircuits genenetworks noise powerspectra ppi by dylanwalker on 2008-06-20 04:19:12 as read along with 4 people and 1 group okarsligil madhadron balabu margaritis Bioinformatics
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