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Tag genechip [23 articles]

Recent papers classified by the tag genechip.
  • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
    Genome Biol, Vol. 6, No. 2. (2005)
    by SE Choe, M Boutros, AM Michelson, GM Church, MS Halfon
    posted to affymetrix analysis genechip methodology by waszak on 2008-01-30 14:59:12 as ** along with 5 people and 1 group daforerog xwbcn jeremymiller ccr ghattem GeschwindLab
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to microarray genechip affymetrix by waszak on 2008-08-16 01:09:07 as ** along with 8 people and 2 groups shikin bertelsen pcahan1 frohike incovoma nicholso heliopais Montrachet GeneGo Bioinformatics
  • Accurate and precise transcriptional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes.
    Genomics, Vol. 88, No. 1. (July 2006), pp. 111-121.
    by JR Shearstone, NE Allaire, J Campos-Rivera, S Rao, S Perrin
    posted to amplification expression genechip microarray profiling transcriptional by shearstj on 2007-09-07 15:10:01 as read
  • Application of functional genomic technologies in a mouse model of retinal degeneration.
    Genomics, Vol. 85, No. 3. (March 2005), pp. 309-321.
    by JR Shearstone, YE Wang, A Clement, NE Allaire, C Yang, DS Worley, JP Carulli, S Perrin
    posted to expression genechip microarray profiling transcriptional by shearstj on 2007-09-07 15:09:44 as read
  • Nondestructive quality control for microarray production.
    Biotechniques, Vol. 32, No. 5. (May 2002)
    by JR Shearstone, NE Allaire, ME Getman, S Perrin
    posted to expression genechip microarray profiling transcriptional by shearstj on 2007-09-07 15:09:24 as read
  • Biochemical characterization of the small heat shock protein IbpB from Escherichia coli.
    J Biol Chem, Vol. 274, No. 15. (9 April 1999), pp. 9937-9945.
    by JR Shearstone, F Baneyx
    posted to amplification expression genechip microarray profiling transcriptional by shearstj on 2007-09-07 15:08:57 as read
  • The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by J Chen, P Zhao, D Massaro, LB Clerch, RR Almon, DC DuBois, WJ Jusko, EP Hoffman
    posted to genechip by ma_ko on 2006-05-02 03:58:23 as **
  • The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by Y Lee, J Tsai, S Sunkara, S Karamycheva, G Pertea, R Sultana, V Antonescu, A Chan, F Cheung, J Quackenbush
    posted to affymetrix annotation est genechip porcine sequence target tigr by incovoma on 2008-02-01 12:44:02 as read along with 2 people miguel Schmidtc
  • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31.
    by Jeremy Harbig, Robert Sprinkle, Steven A Enkemann
    posted to affymetrix annotation consensus genechip sequences target by incovoma on 2008-02-01 12:54:00 as read along with 3 people bertelsen jfr heliopais
  • The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 159-164.
    by J Quackenbush, J Cho, D Lee, F Liang, I Holt, S Karamycheva, B Parvizi, G Pertea, R Sultana, J White
    posted to annotation gene genechip index microarray porcine sequence target tigr by incovoma on 2008-02-01 12:40:53 as read
  • Inconsistencies over time in 5% of NetAffx probe-to-gene annotations.
    BMC Bioinformatics, Vol. 6 (20 July 2005)
    by C Perez-Iratxeta, MA Andrade
    posted to affymetrix annotation genechip netaffx by incovoma on 2008-02-01 12:50:48 as read along with 1 person miguel
  • Annotation of the Affymetrix porcine genome microarray
    Animal Genetics, Vol. 37, No. 4. (August 2006), pp. 423-424.
    by S Tsai, JP Cassady, BA Freking, DJ Nonneman, GA Rohrer, JA Piedrahita
    posted to affymetrix annotation genechip microarray porcine by incovoma on 2008-02-01 12:36:28 as read
  • NetAffx: Affymetrix probesets and annotations.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 82-86.
    by G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, V Valmeekam, S Sun, D Kulp, MA Siani-Rose
    posted to affymetrix annotation consensus genechip sequences target by incovoma on 2008-02-01 12:45:52 as read along with 2 people miguel gpalidwor
  • RESOURCERER: a database for annotating and linking microarray resources within and across species.
    Genome Biol, Vol. 2, No. 11. (2001)
    by J Tsai, R Sultana, Y Lee, G Pertea, S Karamycheva, V Antonescu, J Cho, B Parvizi, F Cheung, J Quackenbush
    posted to affymetrix annotation gene genechip index microarray tigr by incovoma on 2008-02-01 13:00:27 as read along with 1 person aalibes
  • Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays.
    Nucleic Acids Res (12 June 2007)
    by Dmitriy Skvortsov, Diana Abdueva, Christina Curtis, Betty Schaub, Simon Tavaré
    posted to saturation microarray hybridization genechip affymetrix by bertelsen on 2008-04-29 14:32:55 as **** along with 6 people jfr gpalidwor sebastien_vigneau ghattem waszak ptrobajo
  • Quality assessment of Affymetrix GeneChip data.
    OMICS, Vol. 10, No. 3. (2006), pp. 358-368.
    by S Heber, B Sick
    posted to quality microarray genechip affymetrix by bertelsen on 2008-04-29 21:36:40 as **** along with 3 people jfr maldi yevishere
  • BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
    Biostatistics, Vol. 6, No. 3. (July 2005), pp. 349-373.
    by Anne-Mette K Hein
    posted to genechip bayesian analysis affymetrix by bertelsen on 2008-06-06 20:37:31 as *****
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to summary probe level genechip affymetrix by bertelsen on 2008-04-28 22:16:50 as read along with 11 people srp33 pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz
  • The affymetrix GeneChip platform: an overview.
    Methods in enzymology, Vol. 410 (2006), pp. 3-28.
    by DD Dalma-Weiszhausz, J Warrington, EY Tanimoto, CG Miyada
    posted to overview microarray genechip affymetrix by bertelsen on 2008-04-29 21:35:46 as ***
  • Topological Adjustments to Genechip Expression Values
    Methods of Microarray Data Analysis III (2004), pp. 93-101.
    by Andrey Ptitsyn
    posted to quality pattern microarray genechip expression affymetrix adjustment by bertelsen on 2008-06-10 21:23:40 as **
  • The effect of GeneChip gene definitions on the microarray study of cancers.
    Bioessays, Vol. 28, No. 7. (July 2006), pp. 739-746.
    by X Lu, X Zhang
    posted to cancer cdf genechip by bertelsen on 2008-02-16 16:23:52 as ** along with 1 person jfr
  • Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (15 January 2007), 13.
    by Maria A Stalteri, Andrew P Harrison
    posted to affymetrix genechip interpretation mapping probe by bertelsen on 2008-04-20 23:38:14 as read along with 7 people jyuh jfr gpalidwor hpiwowar frohike ghattem heliopais
  • affy--analysis of Affymetrix GeneChip data at the probe level.
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 307-315.
    by L Gautier, L Cope, BM Bolstad, RA Irizarry
    posted to probe-level genechip analysis affymetrix affy by bertelsen on 2007-09-04 23:49:21 as *** along with 5 people and 1 group raylim gupton RMGraze kengg heliopais Plantandetc
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