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Tag gene_duplication [53 articles]

Recent papers classified by the tag gene_duplication.
  • The evolutionary fate of recently duplicated retrogenes in mice
    Journal of Evolutionary Biology, Vol. 20, No. 2. (2007), pp. 617-626.
    by P Gayral, P Caminade, P Boursot, N Galtier
    posted to evolution gene_duplication genetics by TaqSys on 2007-03-01 16:31:16 as ** along with 3 people and 2 groups dchughes agg19954 clearbluespring G4ID Genetics-of-Gambling
  • Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods.
    Mol Phylogenet Evol (3 August 2006)
    by Robert Friedman, Austin L L Hughes
    posted to gene_duplication methods by TaqSys on 2007-03-01 16:33:13 as ** along with 1 person agg19954
  • Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes
    BMC Evolutionary Biology, Vol. 7 (18 January 2007), 2.
    by Vincent J Lynch
    posted to gene_duplication genomics by TaqSys on 2007-11-28 07:11:17 as ** along with 1 person echinotrix
  • Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments
    Molecular Ecology, Vol. 15, No. 12. (2006), pp. 3483-3503.
    by Sarah Mathews
    posted to evo_devo gene_duplication teaching by TaqSys on 2007-03-06 11:33:35 as **
  • Evolution and Expression of Homeologous Loci in Tragopogon miscellus (Asteraceae), a Recent and Reciprocally Formed Allopolyploid
    Genetics, Vol. 173, No. 3. (1 July 2006), pp. 1599-1611.
    by Jennifer A Tate, Zhongfu Ni, Anne-Cathrine Scheen, Jin Koh, Candace A Gilbert, David Lefkowitz, Jeffrey Z Chen, Pamela S Soltis, Douglas E Soltis
    posted to gene_duplication polyploidy by TaqSys on 2007-09-27 10:20:24 as ** along with 1 person echinotrix
  • Functional Analysis of Gene Duplications in Saccharomyces cerevisiae
    Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943.
    by Yuanfang Guan, Maitreya J Dunham, Olga G Troyanskaya
    posted to gene_duplication by TaqSys on 2007-03-19 08:45:25 as ** along with 3 people and 1 group csaveanu carlk cisevol cis-regulatory-evolution
  • External factors accelerate expression divergence between duplicate genes
    Trends in Genetics, Vol. 23, No. 4. (April 2007), pp. 162-166.
    by Misook Ha, Wen-Hsiung Li, Jeffrey Z Chen
    posted to ecology gene_duplication genomics polyploidy by TaqSys on 2007-03-31 13:39:41 as ** along with 2 people echinotrix RamuAnandakrishnan
  • The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families.
    Gene (10 March 2008)
    by Timothy Hughes, David A A Liberles
    posted to gene_duplication gene_family by stajich on 2008-04-08 06:27:13 as ** along with 2 people and 1 group operon klo Berkeley Mycology
  • The Neutral Coalescent Process for Recent Gene Duplications and Copy-Number Variants
    Genetics, Vol. 177, No. 2. (1 October 2007), pp. 987-1000.
    by Kevin R Thornton
    posted to coalescent copy_number_variation gene_duplication population_genetics by stajich on 2008-05-05 02:48:34 as ** along with 1 group Berkeley Mycology
  • Evolution of alternative splicing after gene duplication.
    Genome Res (19 December 2005)
    by Zhixi Su, Jianmin Wang, Jun Yu, Xiaoqiu Huang, Xun Gu
    posted to gene_duplication alternative_splicing by stajich on 2007-01-09 17:39:40 as ** along with 1 person Cortel
  • The multiple gene duplication problem revisited.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by MS Bansal, O Eulenstein
    posted to bioinformatics gene_duplication genome methods by stajich on 2008-07-07 03:37:26 as ** along with 2 people and 1 group bpcusack tharris Berkeley Mycology
  • Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
    Genome Biology, Vol. 8 (05 April 2007), R50.
    by Itay Tirosh, Naama Barkai
    posted to gene_duplication regulatory_evolution yeast by stajich on 2007-04-19 22:07:01 as *** along with 3 people and 2 groups adepace cisevol ajpowell EisenLab cis-regulatory-evolution
  • Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea
    BMC Evolutionary Biology, Vol. 8 (10 January 2008), 4.
    by Christian P Kubicek, Scott E Baker, Christian Gamauf, Charles M Kenerley, Irina S Druzhinina
    posted to birthdeath gene_duplication gene_family hydrophobin trichoderma by stajich on 2008-03-23 19:13:22 as ** along with 1 group Berkeley Mycology
  • Adaptive Evolution of Recently Duplicated Accessory Gland Protein Genes in Desert Drosophila
    Genetics, Vol. 177, No. 2. (1 October 2007), pp. 1023-1030.
    by Bradley J Wagstaff, David J Begun
    posted to drosophila gene_duplication sexual_selection by stajich on 2008-05-05 02:57:51 as ** along with 2 people and 2 groups breden signalduplication signal-duplication Berkeley Mycology
  • DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony.
    Bioinformatics (Oxford, England) (12 May 2008)
    by André Wehe, Mukul S S Bansal, J Gordon G Burleigh, Oliver Eulenstein
    posted to duplication gene_duplication gene_tree methods phylogenetics by stajich on 2008-05-14 22:09:21 as ** along with 1 person and 1 group tharris Berkeley Mycology
  • Complex evolution of the DAL5 transporter family
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Linda Hellborg, Megan Woolfit, Mattias A Hellborg, Jure Piskur
    posted to ascomycota fungi gene_duplication gene_family saccharomyces transporter yeast by stajich on 2008-06-09 05:45:17 as ** along with 1 person and 1 group neils Berkeley Mycology
  • Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1341-1350.
    by Kevin P Byrne, Kenneth H Wolfe
    posted to gene_duplication regulatory_evolution yeast by stajich on 2007-04-19 22:08:36 as *** along with 3 people and 1 group gjuggler dpollard echinotrix EisenLab
  • Comparative Genomics Reveals a Constant Rate of Origination and Convergent Acquisition of Functional Retrogenes in Drosophila
    Genome Biology, Vol. 8 (18 January 2007), R11.
    by Yongsheng Bai, Claudio Casola, Cedric Feschotte, Esther Betran
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:34:42 as ** along with 2 people and 1 group indigoviolet dpollard EisenLab
  • Not Born Equal: Increased Rate Asymmetry in Relocated and Retrotransposed Rodent Gene Duplicates
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 679-686.
    by Cusack, P Brian, Wolfe, H Kenneth
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:51:26 as **
  • Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection.
    PLoS genetics, Vol. 4, No. 8. (August 2008)
    by L Rosso, AC Marques, AS Reichert, H Kaessmann
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:17:52 as ** along with 1 person bpcusack
  • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e140.
    by Lia Rosso, Ana C Marques, Manuela Weier, Nelle Lambert, Marie-Alexandra Lambot, Pierre Vanderhaeghen, Henrik Kaessmann
    posted to retrogenes gene_duplication genomics human_evolution selfish_dna by shoshin on 2008-06-22 21:22:26 as *** along with 2 people djkt natstreet
  • Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
    PNAS, Vol. 103, No. 21. (23 May 2006), pp. 8101-8106.
    by Richard Cordaux, Swalpa Udit, Mark A Batzer, Cedric Feschotte
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:35:41 as ** along with 2 people and 3 groups dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • Analysis of the role of retrotransposition in gene evolution in vertebrates
    BMC Bioinformatics, Vol. 8 (24 August 2007), 308.
    by Zhan Yu, David Morais, Mahine Ivanga, Paul M Harrison
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:48:49 as ** along with 1 person renatomilani
  • Evolutionary fate of retroposed gene copies in the human genome
    PNAS, Vol. 103, No. 9. (28 February 2006), pp. 3220-3225.
    by Nicolas Vinckenbosch, Isabelle Dupanloup, Henrik Kaessmann
    posted to gene_duplication genomics human_evolution selfish_dna retrogenes by shoshin on 2008-06-22 20:39:55 as **** along with 2 people and 2 groups xwbcn dchughes G4ID Genetics-of-Gambling
  • Extensive Gene Traffic on the Mammalian X Chromosome
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 537-540.
    by JJ Emerson, Henrik Kaessmann, Esther Betran, Manyuan Long
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:28:40 as ** along with 2 people and 1 group penka bpcusack Nie
  • The origin of new genes: glimpses from the young and old.
    Nat Rev Genet, Vol. 4, No. 11. (November 2003), pp. 865-875.
    by M Long, E Betrán, K Thornton, W Wang
    posted to gene_duplication genomics selfish_dna retrogenes by shoshin on 2008-08-14 17:32:56 as ** along with 2 people ushishir timflutre
  • Emergence of Young Human Genes after a Burst of Retroposition in Primates.
    PLoS Biol, Vol. 3, No. 11. (11 October 2005)
    by Ana Claudia C Marques, Isabelle Dupanloup, Nicolas Vinckenbosch, Alexandre Reymond, Henrik Kaessmann
    posted to gene_duplication genomics human_evolution selfish_dna retrogenes by shoshin on 2008-06-22 20:43:16 as **** along with 5 people and 3 groups stevanspringer dchughes scroft RamuAnandakrishnan clearbluespring FAB-lab G4ID Genetics-of-Gambling
  • Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods.
    Proc Natl Acad Sci U S A, Vol. 102, No. 17. (26 April 2005), pp. 6039-6044.
    by Y Niimura, M Nei
    posted to evolution gene_duplication gene_family paralog by Schmidtc on 2005-10-31 17:07:55 as **
  • Molecular evolution of the HoxA cluster in the three major gnathostome lineages.
    Proc Natl Acad Sci U S A, Vol. 99, No. 8. (16 April 2002), pp. 5492-5497.
    by CH Chiu, C Amemiya, K Dewar, CB Kim, FH Ruddle, GP Wagner
    posted to bioinformatics evolution gene_duplication hox by Schmidtc on 2005-10-30 17:56:48 as ****
  • Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico.
    Appl Bioinformatics, Vol. 2, No. 2. (2003), pp. 91-101.
    by J Raes, Y Van de Peer
    posted to bioinformatics evolution gene_duplication by Schmidtc on 2005-10-30 17:52:54 as ** along with 2 people mdimmic imouthesmp
  • The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.
    J Mol Evol, Vol. 53, No. 4-5. (v 2001), pp. 436-446.
    by Y Van de Peer, JS Taylor, I Braasch, A Meyer
    posted to evolution gene_duplication review by Schmidtc on 2005-10-30 17:39:54 as *** along with 1 person imouthesmp
  • Comparative developmental genetics and the evolution of arthropod body plans.
    Annu Rev Genet, Vol. 39 (2005), pp. 95-119.
    by DR Angelini, TC Kaufman
    posted to evolution gene_duplication hox by Schmidtc on 2005-11-28 13:58:00 as **
  • Modeling gene and genome duplications in eukaryotes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5454-5459.
    by S Maere, S De Bodt, J Raes, T Casneuf, M Van Montagu, M Kuiper, Y Van de Peer
    posted to evolution gene_duplication review by Schmidtc on 2005-10-30 17:34:44 as ***** along with 6 people and 2 groups imouthesmp ushishir dchughes nirfriedman echinotrix timflutre G4ID Genetics-of-Gambling
  • Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
    BMC Genomics, Vol. 8 (19 September 2007), 330.
    by Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Jing Yi, Majesta O'Bleness, Bruce A Roe, Rex T Nelson, Brian E Scheffler, Scott A Jackson, Randy C Shoemaker
    posted to gene_duplication genomics paleopolypoloiy soybean by sanchezbuelna on 2008-05-01 19:52:29 as *** along with 1 person dandaman
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to comparative_genomics evolution gene_duplication protein_nw yeast by roys on 2008-01-17 19:30:58 as ** along with 3 people cjeans zwang phoenixzxl
  • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.
    Plant Cell, Vol. 16, No. 7. (July 2004), pp. 1679-1691.
    by G Blanc, KH Wolfe
    posted to arabidopsis evolution gene_duplication redundancy by pansapiens on 2006-06-09 04:34:10 as *** along with 4 people and 1 group Schmidtc cmm echinotrix RamuAnandakrishnan FAB-lab
  • Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators.
    Biol Cybern, Vol. 74, No. 6. (June 1996), pp. 557-567.
    by A Wagner
    posted to evolution gene_duplication redundancy by pansapiens on 2005-08-26 02:29:39 as **
  • Protein Molecular Function Prediction by Bayesian Phylogenomics.
    PLoS Comput Biol, Vol. 1, No. 5. (7 October 2005)
    by Barbara E E Engelhardt, Michael I I Jordan, Kathryn E E Muratore, Steven E E Brenner
    posted to function_prediction gene_duplication hgt orthology phylogenomics protein_evolution protein_function protein_sequence by ana to the group Bioinformatics on 2005-11-22 19:15:19 as ** along with 7 people and 3 groups kentsis eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics BioinfoCIPF SGU-CIPF
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to gene_duplication genome_evolution power-law protein_evolution protein_interaction protein_universe selection stochastic_process by ana to the group Bioinformatics on 2005-06-27 18:10:37 as * along with 5 people and 3 groups marcius tny cjeans martainn mdimon structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Gene duplication: the genomic trade in spare parts.
    PLoS Biol, Vol. 2, No. 7. (July 2004)
    by M Hurles
    posted to gene_duplication neofunctionalization pseudogene subfunctionalization by ana to the group Bioinformatics on 2005-05-06 22:11:53 as ** along with 2 people and 1 group barry signalduplication structural_bioinformatics
  • Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer
    Science, Vol. 318, No. 5855. (30 November 2007), pp. 1449-1452.
    by Rotem Sorek, Yiwen Zhu, Christopher J Creevey, Pilar M Francino, Peer Bork, Edward M Rubin
    posted to essentiality gene_duplication lethality by entropy on 2008-07-16 16:06:20 as ** along with 6 people operon djkt bluto Katje emptyhb madhadron
  • Role of positive selection in the retention of duplicate genes in mammalian genomes
    PNAS, Vol. 103, No. 7. (14 February 2006), pp. 2232-2236.
    by Shin-Han Shiu, Jake K Byrnes, Runsun Pan, Peng Zhang, Wen-Hsiung Li
    posted to gene_duplication molecular_evolution positive_selection by ejeffery on 2006-05-04 18:38:04 as ** along with 2 people and 1 group stevanspringer cmm FAB-lab
  • Genome duplication and the origin of angiosperms
    Trends in Ecology & Evolution, Vol. 20, No. 11. (November 2005), pp. 591-597.
    by Stefanie De Bodt, Steven Maere, Yves Van de Peer
    posted to gene_duplication phylogenetics polyploidy by echinotrix on 2007-09-13 14:15:08 as ** along with 3 people and 1 group cmm plofje timflutre FAB-lab
  • Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants
    J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141.
    by Keith L Adams
    posted to evolution gene_duplication polyploidy by echinotrix on 2007-09-13 13:47:51 as ** along with 5 people and 1 group balicea cmm TaqSys natstreet dandaman FAB-lab
  • Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy
    Plant Cell, Vol. 18, No. 6. (1 June 2006), pp. 1348-1359.
    by Christopher D Town, Foo Cheung, Rama Maiti, Jonathan Crabtree, Brian J Haas, Jennifer R Wortman, Erin E Hine, Ryan Althoff, Tamara S Arbogast, Luke J Tallon, Marielle Vigouroux, Martin Trick, Ian Bancroft
    posted to evolution gene_duplication genomics polyploidy by echinotrix on 2007-09-13 14:11:58 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to gene_duplication gene_evolution by dandaman on 2008-07-30 14:24:38 as ** along with 13 people and 4 groups aheilbut dpollard tny dchughes djkt stajich zwang biomcgary lp2 tzhughes maximilianh pkm bpcusack EisenLab G4ID Genetics-of-Gambling Berkeley Mycology
  • Pervasive and Persistent Redundancy among Duplicated Genes in Yeast
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000113.
    by Jedediah E Dean, Jerel C Davis, Ronald W Davis, Dmitri A Petrov
    posted to gene_duplication yeast by caseybrown on 2008-07-29 12:45:13 as ** along with 2 people djkt bpcusack
  • Exposing the fitness contribution of duplicated genes
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 676-681.
    by Alexander Deluna, Kalin Vetsigian, Noam Shoresh, Matthew Hegreness, Maritrini Colon-Gonzalez, Sharon Chao, Roy Kishony
    posted to gene_duplication molevol yeast by caseybrown on 2008-05-07 00:00:09 as ** along with 1 person djkt
  • Genomic Plasticity and the Diversity of Polyploid Plants
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 481-483.
    by AR Leitch, IJ Leitch
    posted to diversification gene_duplication phenotype plant plasticity polyploid by biomcgary on 2008-04-25 17:42:38 as ** along with 5 people and 1 group natstreet imtechnology echinotrix timflutre ArtemPankin Khavkin's lab
  • Evolutionary genetics: Making the most of redundancy
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 673-674.
    by Edward J Louis
    posted to evolution fungi gene_duplication by biomcgary on 2007-10-26 23:32:08 as ** along with 1 person bpcusack
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