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Tag gene-ontology [31 articles]

Recent papers classified by the tag gene-ontology.
  • On ontologies for biologists: the Gene Ontology--untangling the web.
    Novartis Found Symp, Vol. 247 (2002)
    by M Ashburner, S Lewis
    posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:33:38 as ***** along with 1 person skhadar
  • The gene ontology categorizer.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by CA Joslyn, SM Mniszewski, A Fulmer, G Heaton
    posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:25:36 as ** along with 1 person cmzmasek
  • Automatic annotation of protein motif function with Gene Ontology terms.
    BMC Bioinformatics, Vol. 5, No. 1. (2 September 2004)
    by X Lu, C Zhai, V Gopalakrishnan, BG Buchanan
    posted to bioinformatics gene-ontology protein-motif by ziquje on 2005-02-14 17:37:19 as **
  • The Emerging World of Wikis
    Science, Vol. 320, No. 5881. (6 June 2008), pp. 1289b-1290.
    by James C Hu, Rodolfo Aramayo, Dan Bolser, Tyrrell Conway, Christine G Elsik, Michael Gribskov, Thomas Kelder, Daisuke Kihara, Knight, Alexander R Pico, Deborah A Siegele, Barry L Wanner, Roy D Welch
    posted to wiki knowledge-curation institution-design infrastructure gene-ontology by jago on 2008-06-06 09:14:56 as ** along with 13 people and 3 groups ChrisEvelo rrbarb martindale reyez heatherstaines teachingaging tharris CUL_Akbar davidmihalcik krisl dullhunk barriot AlexanderPico Method_Engineering_Services Knowledge_Economy_Reform Global_health_enterprise_architecture
  • Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species
    Mammalian Genome, Vol. 18, No. 6. (4 July 2007), pp. 402-411.
    by Jonathan Bard
    posted to systems-biology gene-ontology developmental-biology by dchughes to the group G4ID on 2007-09-10 10:14:52 as ** along with 1 person and 1 group jyuh Genetics-of-Gambling
  • Phenogo: assigning phenotypic context to gene ontology annotations with natural language processing.
    Pac Symp Biocomput (2006), pp. 64-75.
    by Y Lussier, T Borlawsky, D Rappaport, Y Liu, C Friedman
    posted to gene-ontology genotype nlp phenotype by fisherp on 2007-02-22 14:25:48 as ** along with 3 people and 1 group helliontroy aconesa sgoetz biomedical-nlp
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to gene-ontology by fisherp on 2006-08-12 20:10:18 as ** along with 32 people and 5 groups roys dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Deductive biocomputing
    PLoS ONE, Vol. 2 (2007)
    by J Shrager, R Waldinger, M Stickel, JP Massar
    posted to bioinformatics gene-ontology reasoner by dullhunk on 2007-11-13 11:31:50 as ** along with 3 people aheilbut jyuh tmmurali
  • Biology's name game.
    Nature, Vol. 411, No. 6838. (7 June 2001), pp. 631-632.
    by H Pearson
    posted to gene-ontology michael-ashburner stonerds by dullhunk on 2007-10-26 16:00:55 as ** along with 2 people and 2 groups irenas yas dbk-lab T_lab
  • The fiction of function
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1934-1936.
    by J Shrager
    posted to gene-ontology by dullhunk on 2007-11-13 11:31:35 as **
  • Gene Ontology annotations: what they mean and where they come from.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by DP Hill, B Smith, MS McAndrews-Hill, JA Blake
    posted to gene-ontology by dullhunk on 2008-07-09 23:44:48 as ** along with 6 people and 1 group carlk lmichan grahamc dchughes jyuh mariakmejia e-research en ciencias médicas y biológicas
  • GOHSE: Ontology driven linking of biology resources
    Web Semantics: Science, Services and Agents on the World Wide Web, Vol. 4, No. 3. (September 2006), pp. 155-163.
    by SK Bechhofer, RD Stevens, PW Lord
    posted to cohse gene-ontology by dullhunk on 2007-11-07 11:00:07 as read along with 2 people alanrw jiangbo
  • notes Enrichment of OBO ontologies
    Journal of Biomedical Informatics, Vol. 40, No. 3. (June 2007), pp. 300-315.
    by Michael Bada, Lawrence Hunter
    posted to ontology obo mike-bada gene-ontology chebi by dullhunk on 2007-10-30 11:34:10 as ** along with 1 person leechuck
  • GOTreePlus: An Interactive Gene Ontology Browser for Proteomics Projects.
    Bioinformatics (21 February 2008)
    by Bongshin Lee, Kristy Brown, Yetrib Hathout, Jinwook Seo
    posted to gene-ontology by dullhunk on 2008-02-25 10:20:30 as ** along with 1 person jyuh
  • The Gene Ontology (GO) project in 2006
    Nucleic Acids Research, Vol. 34, No. Database issue. (1 January 2006)
    by
    posted to gene-ontology by dullhunk on 2007-11-02 14:12:47 as ** along with 1 person kluck
  • GOAnnotator: linking protein GO annotations to evidence text
    Journal of Biomedical Discovery and Collaboration, Vol. 1 (20 December 2006), 19.
    by Francisco M Couto, Mario J Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch, Dietrich Rebholz-Schuhmann
    posted to gene-ontology text-mining by dullhunk on 2008-01-14 11:55:56 as ** along with 2 people yggdrasil clockett
  • Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL
    BMC Bioinformatics, Vol. 8 (20 February 2007), 57.
    by Mikel E Aranguren, Sean Bechoffer, Phillip Lord, Ulrike Sattler, Robert Stevens
    posted to gene-ontology owl by dullhunk on 2007-10-30 11:26:13 as ** along with 5 people dansullivanblk alanrw jyuh ghattem macavity1g
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to gene-ontology by dullhunk on 2008-07-07 09:31:04 as ** along with 2 people barriot jyuh
  • Enzyme Nomenclature 1992
    (27 August 1992)
    by International
    posted to gene-ontology ontology by dullhunk on 2007-10-29 12:38:57 as ** along with 2 people koerner leechuck
  • GoPubMed: exploring PubMed with the Gene Ontology.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by A Doms, M Schroeder
    posted to gene-ontology gopubmed pubmed text-mining by dullhunk on 2007-11-09 10:57:32 as read along with 6 people and 1 group jyuh yas zaiqing gaudan mroos yggdrasil T_lab
  • A short study on the success of the Gene Ontology
    Web Semantics: Science, Services and Agents on the World Wide Web, Vol. 1, No. 2. (February 2004), pp. 235-240.
    by Michael Bada, Robert Stevens, Carole Goble, Yolanda Gil, Michael Ashburner, Judith A Blake, Michael J Cherry, Midori Harris, Suzanna Lewis
    posted to mike-bada gene-ontology by dullhunk on 2007-10-18 12:58:11 as read along with 2 people CitoJam jiangbo
  • Methods in biomedical ontology.
    Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 252-266.
    by AC Yu
    posted to fma galen gene-ontology ontology owl rdf snomed umls by dullhunk on 2007-10-30 11:34:26 as ** along with 2 people and 3 groups beapen leechuck Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
  • Creating the gene ontology resource: design and implementation.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1425-1433.
    by
    posted to gene-ontology by dgront on 2008-06-30 18:49:32 as read along with 5 people and 1 group marck CitoJam helliontroy sgoetz PunkRock biomedical-nlp
  • BayGO: Bayesian analysis of ontology term enrichment in microarray data.
    BMC Bioinformatics, Vol. 7 (2006)
    by RZ Vêncio, T Koide, SL Gomes, CA Pereira
    posted to methods go-term-enrichment go-analysis gene-ontology computational-biology bayesian-methods by cmzmasek on 2008-06-12 23:52:50 as ** along with 1 person jfr
  • notes GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2158-2160.
    by Luis A Martinez-Cruz, Angel Rubio, Maria L Martinez-Chantar, Alberto Labarga, Isabel Barrio, Adam Podhorski, Victor Segura, Sevilla, Matias A Avila, Jose M Mato
    posted to gene-ontology martinez-cruz-03 by CitoJam on 2006-11-08 11:09:59 as read along with 1 person macavity1g
  • notes Semantic similarity measures as tools for exploring the gene ontology.
    Pac Symp Biocomput (2003), pp. 601-612.
    by PW Lord, RD Stevens, A Brass, CA Goble
    posted to gene-ontology lord-03b by CitoJam on 2006-11-07 10:14:21 as *** along with 8 people and 3 groups irenas andytseng ejmeij gaudan josemblazquez macavity1g sgoetz pmidford dbk-lab ilps LanguageModeling
  • notes A methodology to migrate the gene ontology to a description logic environment using DAML+OIL.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2003), pp. 624-635.
    by CJ Wroe, R Stevens, CA Goble, M Ashburner
    posted to wroe-03 gene-ontology by CitoJam on 2008-04-26 19:26:05 as **
  • It's all GO for plant scientists.
    Plant physiology, Vol. 138, No. 3. (July 2005), pp. 1268-1279.
    by JI Clark, C Brooksbank, J Lomax
    posted to clark-05 gene-ontology by CitoJam on 2008-04-13 20:32:54 as **
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
    posted to camon-05 gene-ontology by CitoJam on 2008-04-13 20:31:37 as ** along with 4 people and 2 groups yggdrasil yas helliontroy adoms T_lab biomedical-nlp
  • notes Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships
    Computational Intelligence in Bioinformatics and Computational Biology, 2004. CIBCB '04. Proceedings of the 2004 IEEE Symposium on (2004), pp. 25-31.
    by H Wang, F Azuaje, O Bodenreider, J Dopazo
    posted to wang-04 semantic-similarity gene-ontology gene-expression-correlation by CitoJam on 2006-12-15 15:25:59 as ***
  • notes The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 662-672.
    by E Camon, M Magrane, D Barrell, D Binns, W Fleischmann, P Kersey, N Mulder, T Oinn, J Maslen, A Cox, R Apweiler
    posted to camon-03 gene-ontology by CitoJam on 2008-04-13 22:50:01 as read along with 2 people alanrw moborg
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