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Tag fold [68 articles]

Recent papers classified by the tag fold.
  • Algebra of Programming, The
    (26 September 1996)
    by Richard Bird, Oege de Moor
    posted to unfold theory recursion functional-programming fold category by voronov on 2008-04-27 07:55:47 as read along with 2 people voigt oryp6518
  • In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling.
    J Mol Biol, Vol. 328, No. 3. (2 May 2003), pp. 593-608.
    by B Contreras-Moreira, PW Fitzjohn, PA Bates
    posted to algorithm bioinformatics comparative fold genetic modeling recognition selection template by ujh on 2005-05-21 15:01:12 as **** along with 1 person j3xucite
  • Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space.
    Proteins, Vol. 53 Suppl 6 (2003), pp. 424-429.
    by B Contreras-Moreira, PW Fitzjohn, M Offman, GR Smith, PA Bates
    posted to algorithm bioinformatics comparative fold genetic modeling recognition selection template by ujh on 2005-05-21 15:00:33 as ****
  • Functional Programming with Bananas, Lenses, Envelopes and Barbed Wire
    Vol. 523 (1991), pp. 124-144.
    by Erik Meijer, Maarten Fokkinga, Ross Paterson
    edited by J Hughes
    posted to category-theory fold functional by tautologico on 2007-05-14 15:23:48 as *** along with 26 people and 4 groups pedagand jkominek dvgb rgrig jrw MattOConnor rahul ergodique kavabean damaru pintman croys roi msakai lomeo scis0000001 brothers calvins armintroy dhag Porges conal cdiggins mmarcus jimburton namin SRL SRG_at_UCD complogic Lambda the Ultimate
  • Bananas in Space: Extending Fold and Unfold to Exponential Types
    (1995), pp. 324-333.
    by Erik Meijer, Graham Hutton
    posted to unfold gofer functors function-spaces free-theorems fold fixed-point difunctors catamorphism anamorphism by spl on 2008-08-18 18:26:44 as ** along with 5 people and 1 group JacquesC jyasskin voigt msakai dmitri83 NU-PRL
  • A Short Cut to Deforestation
    (1993), pp. 223-232.
    by Andrew Gill, John Launchbury, Simon P Jones
    posted to list-comprehensions haskell fusion fold deforestation arrays by spl on 2008-05-31 14:47:19 as ** along with 1 person wtribbey
  • Perfect trees and bit-reversal permutations
    Journal of Functional Programming, Vol. 10, No. 03. (2000), pp. 305-317.
    by Ralf Hinze
    posted to unfold rank-2-polymorphism performance nested-datatypes haskell fold by spl on 2008-06-11 18:19:57 as ***
  • The Under-Appreciated Unfold
    (1998), pp. 273-279.
    by Jeremy Gibbons, Geraint Jones
    posted to unfold program-calculation fold anamorphism by spl on 2008-08-18 11:09:15 as ** along with 1 person calvins
  • When is a function a fold or an unfold?
    Electronic Notes in Theoretical Computer Science, Vol. 44, No. 1. (May 2001), pp. 146-160.
    by Jeremy Gibbons, Graham Hutton, Thorsten Altenkirch
    posted to unfold set-theory recursion fold by spl on 2008-08-08 16:37:29 as ** along with 1 person huitseeker
  • Functional Programming with Bananas, Lenses, Envelopes and Barbed Wire
    (1991), pp. 124-144.
    by Erik Meijer, Maarten Fokkinga, Ross Paterson
    posted to unfold program-calculation paramorphism lazy-evaluation hylomorphism functors fold catamorphism bifunctors anamorphism by spl on 2008-08-18 18:44:21 as ** along with 10 people and 3 groups greenrd yallop jyasskin voigt oryp6518 dmitri83 aleks rgb bringert wtribbey SRG_at_UCD Compilers pileWorks
  • Fold and Unfold for Program Semantics
    (1998), pp. 280-288.
    by Graham Hutton
    posted to unfold semantics recursion operational-semantics fold denotational-semantics by spl on 2008-08-18 11:12:56 as ** along with 2 people and 1 group msakai mcclurmc Lambda the Ultimate
  • New scoring schemes for protein fold recognition based on Voronoi contacts.
    Bioinformatics, Vol. 14, No. 3. (1998), pp. 295-308.
    by R Zimmer, M Wöhler, R Thiele
    posted to fold protein recognition scheme scoring tessellation voronoi by siebertm on 2007-04-23 16:27:04 as * along with 1 person aengisch
  • Protein folds and functions.
    Structure, Vol. 6, No. 7. (15 July 1998), pp. 875-884.
    by AC Martin, CA Orengo, EG Hutchinson, S Jones, M Karmirantzou, RA Laskowski, JB Mitchell, C Taroni, JM Thornton
    posted to fold function protein relationship by siebertm on 2007-05-20 14:14:10 as *
  • Computational methods in protein structure prediction.
    Biotechnol Bioeng, Vol. 97, No. 2. (1 June 2007), pp. 207-213.
    by CA Floudas
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:43:10 as **
  • Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.
    Proteins, Vol. 42, No. 3. (15 February 2001), pp. 319-331.
    by J Skolnick, D Kihara
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:41:00 as ** along with 1 person dgront
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J. Mol. Biol., Vol. 247 (1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:36:24 as **
  • Hybrid fold recognition: Combining sequence derived properties with evolutionary information
    (2000)
    by D Fischer
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:35:26 as **
  • Assessment of fold recognition predictions in CASP6.
    Proteins (26 September 2005)
    by Guoli Wang, Yumi Jin, Roland L L Dunbrack
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:31:43 as ** along with 3 people and 2 groups janasont nigham marcius BioinfoCIPF SGU-CIPF
  • Critical assessment of methods of protein structure prediction (CASP)--round 6.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 3-7.
    by J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:31:20 as ** along with 4 people saunders j3xucite dgront aengisch
  • Comparative modeling in CASP6 using consensus approach to template selection, sequence-structure alignment, and structure assessment.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 99-105.
    by C Venclovas, M Margelevicius
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:30:52 as ** along with 1 person nigham
  • Progress over the first decade of CASP experiments.
    Proteins (26 September 2005)
    by Andriy Kryshtafovych, Ceslovas Venclovas, Krzysztof Fidelis, John Moult
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:28:54 as ** along with 4 people and 2 groups granujilla bicko marcius ffranca BioinfoCIPF SGU-CIPF
  • Free modeling with Rosetta in CASP6.
    Proteins (26 September 2005)
    by Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E E Kim, Jens Meiler, Kira M S M Misura, David Baker
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:28:13 as ** along with 4 people and 2 groups jwm marcius dgront mirzazadeh BioinfoCIPF SGU-CIPF
  • Prediction of CASP6 structures using automated Robetta protocols.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 157-166.
    by D Chivian, DE Kim, L Malmström, J Schonbrun, CA Rohl, D Baker
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:27:35 as ** along with 1 person jwm
  • Fold recognition by concurrent use of solvent accessibility and residue depth.
    Proteins, Vol. 68, No. 3. (15 August 2007), pp. 636-645.
    by S Liu, C Zhang, S Liang, Y Zhou
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:25:48 as ** along with 1 person newton1234
  • TASSER: An automated method for the prediction of protein tertiary structures in CASP6.
    Proteins (26 September 2005)
    by Yang Zhang, Adrian K K Arakaki, Jeffrey Skolnick
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:56:58 as ** along with 4 people and 2 groups nigham marcius dgront mirzazadeh BioinfoCIPF SGU-CIPF
  • Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
    Proteins, Vol. 56, No. 3. (15 August 2004), pp. 502-518.
    by J Skolnick, D Kihara, Y Zhang
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:47:19 as ** along with 1 person j3xucite
  • GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences.
    J Mol Biol, Vol. 287, No. 4. (9 April 1999), pp. 797-815.
    by DT Jones
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:59:26 as ** along with 3 people janasont j3xucite dgront
  • notes The protein structure prediction problem could be solved using the current PDB library.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:46:04 as ** along with 9 people and 3 groups neils karbak iakes vavi marcius alexg j3xucite kracher jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF
  • From fold to function.
    Curr Opin Struct Biol, Vol. 10, No. 3. (June 2000), pp. 384-389.
    by J Moult, E Melamud
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:54:13 as **
  • Sequence comparison and protein structure prediction.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 374-384.
    by RL Dunbrack
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:53:28 as ** along with 4 people jwm wouterboomsma xiaobeizhao rabio
  • Servers for protein structure prediction.
    Curr Opin Struct Biol (16 March 2006)
    by Daniel Fischer
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:51:59 as ** along with 6 people granujilla kuhn chad_davis wouterboomsma dgront Jporci
  • Comparative modeling for protein structure prediction.
    Curr Opin Struct Biol (27 February 2006)
    by Krzysztof Ginalski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:51:09 as ** along with 6 people granujilla BragilMassoud kuhn rabio ruvido insectopalo
  • Detecting distant homology with Meta-BASIC.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by K Ginalski, M von Grotthuss, NV Grishin, L Rychlewski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:50:23 as ** along with 1 person rabio
  • Advances in protein structure prediction and de novo protein design: A review
    Chemical Engineering Science, Vol. 61, No. 3. (February 2006), pp. 966-988.
    by CA Floudas, HK Fung, SR Mcallister, M Monnigmann, R Rajgaria
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:48:37 as ** along with 2 people granujilla massivemayhem
  • 3D-Jury: a simple approach to improve protein structure predictions.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 1015-1018.
    by K Ginalski, A Elofsson, D Fischer, L Rychlewski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:46:33 as ** along with 3 people karbak dgront mijam
  • How RNA folds.
    J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 271-281.
    by I Tinoco, C Bustamante
    posted to fold rna by physics on 2007-05-05 22:56:16 as *** along with 8 people and 3 groups dayjm marcius eckart_bindewald perrywoo arcticrasta condon Hosna apop beta BioinfoCIPF SGU-CIPF
  • Microscale NMR Screening of New Detergents for Membrane Protein Structural Biology
    J. Am. Chem. Soc. (14 May 2008)
    by Qinghai Zhang, Reto Horst, Michael Geralt, Xingquan Ma, Wen-Xu Hong, MG Finn, Raymond C Stevens, Kurt
    posted to protein membrane fold detergents by paulschlesinger on 2008-05-22 02:02:13 as ** along with 1 person rph
  • A Tutorial on the Universality and Expressiveness of Fold
    Journal of Functional Programming, Vol. 9, No. 4. (1999), pp. 355-372.
    by Graham Hutton
    posted to fold by paper_jac on 2007-12-14 21:51:22 as ** along with 4 people and 2 groups rahul mcclurmc hayeah americovargas SRL Lambda the Ultimate
  • How old is your fold?
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by HF Winstanley, S Abeln, CM Deane
    posted to evolution fold phylogeny protein by pansapiens on 2005-08-15 09:22:06 as ** along with 2 people and 2 groups ana cdeane structural_bioinformatics Bioinformatics
  • Assessment of CASP6 predictions for new and nearly new fold targets.
    Proteins, Vol. 61 Suppl 7 (26 September 2005), pp. 67-83.
    by James JJ Vincent, Chin-Hsien H Tai, BKK Sathyanarayana, Byungkook Lee
    posted to ab casp casp6 fold folding initio new protein by nigham on 2006-04-21 09:44:38 as *** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
    Proteins, Vol. 61 Suppl 7 (26 September 2005), pp. 84-90.
    by Andrzej Koliński, Janusz MM Bujnicki
    posted to ab casp casp6 fold folding initio protein recognition by nigham on 2006-04-21 02:28:26 as *** along with 2 people and 2 groups marcius dgront BioinfoCIPF SGU-CIPF
  • Divergence of Function in the Hot Dog Fold Enzyme Superfamily: The Bacterial Thioesterase YciA
    Biochemistry (2 February 2008)
    by Zhihao Zhuang, Feng Song, Hong Zhao, Ling Li, Jian Cao, Edward Eisenstein, Osnat Herzberg, Debra Dunaway-Mariano
    posted to enzyme fold function hotdog superfamily thioesterase by neils on 2008-02-02 07:58:48 as **
  • A tale of two ferredoxins: sequence similarity and structural differences
    BMC Structural Biology, Vol. 6 (09 April 2006), 8.
    by Sri S Krishna, Ruslan I Sadreyev, Nick V Grishin
    posted to analogy fold sequence similarity structure by msierk on 2006-07-11 18:51:53 as read
  • Proteins of the same fold and unrelated sequences have similar amino acid composition.
    Proteins (24 March 2006)
    by Yanay Ofran, Hanah Margalit
    posted to acid amino composition fold protein sequence by msierk on 2006-06-13 19:09:32 as *** along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
  • Less is more: towards an optimal universal description of protein folds.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JD Szustakowski, S Kasif, Z Weng
    posted to definition fold protein by msierk on 2006-07-19 18:14:52 as *** along with 3 people and 2 groups ana barry krishnaJCSG structural_bioinformatics Bioinformatics
  • A fast SCOP fold classification system using content-based E-Predict algorithm
    BMC Bioinformatics, Vol. 7 (26 July 2006), 362.
    by Pin-Hao Chi, Chi-Ren Shyu, Dong Xu
    posted to classification fold scop by msierk on 2006-08-15 17:12:10 as ****
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058., pp. 512-518.
    by Michael Socolich, Steve W Lockless, William P Russ, Heather Lee, Kevin H Gardner, Rama Ranganathan
    posted to evolutionary fold protein by mingzhi on 2007-12-22 08:57:15 as ** along with 14 people and 5 groups ana barry lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.
    Protein Sci, Vol. 11, No. 2. (February 2002), pp. 350-360.
    by I Friedberg, H Margalit
    posted to fold function prediction protein by marcius on 2006-09-07 17:10:19 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Vienna RNA secondary structure server.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3429-3431.
    by IL Hofacker
    posted to fold rna secondary structure by maralena on 2008-02-06 08:48:30 as ** along with 10 people reyez evaf dayjm eckart_bindewald balicea arcticrasta mtagaya dquest ilh onufriev
  • SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
    BMC Bioinformatics, Vol. 8 Suppl 4 (2007)
    by I Melvin, E Ie, R Kuang, J Weston, WN Stafford, C Leslie
    posted to fold multi-class protein svm by kallberg on 2008-02-26 22:52:41 as **
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