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Tag flux [88 articles]

Recent papers classified by the tag flux.
  • The kinesin Eg5 drives poleward microtubule flux in Xenopus laevis egg extract spindles.
    J Cell Biol, Vol. 167, No. 5. (6 December 2004), pp. 813-818.
    by DT Miyamoto, ZE Perlman, KS Burbank, AC Groen, TJ Mitchison
    posted to flux measurement speed by wyzewoman on 2005-12-31 21:33:37 as ***
  • The use of fura-2 for estimating ca buffers and ca fluxes
    Neuropharmacology, Vol. 34, No. 11. (November 1995), pp. 1423-1442.
    by E Neher
    posted to biophysics buffer calcium flux fura-2 by tmiya on 2006-06-21 14:14:35 as ***
  • Refixation of respired CO2 by understory vegetation in a cool-temperate deciduous forest in Japan
    Agricultural and Forest Meteorology, Vol. 134, No. 1-4. (30 November 2005), pp. 110-121.
    by Miyuki Kondo, Hiroyuki Muraoka, Masao Uchida, Yukihiro Yazaki, Hiroshi Koizumi
    posted to flux japan takayama by takanashi on 2006-02-21 00:46:25 as **
  • Protein kinase-mediated regulation of calcineurin through the phosphorylation of modulatory calcineurin-interacting protein 1.
    J Biol Chem, Vol. 281, No. 12. (24 March 2006), pp. 7717-7726.
    by S Abbasi, JD Lee, B Su, X Chen, JL Alcon, J Yang, RE Kellems, Y Xia
    posted to calcineurin calcium flux by swennemann on 2006-04-25 08:53:45 as **
  • A respirometer for investigating oxidative cell metabolism: toward optimization of respiratory studies.
    Anal Biochem, Vol. 218, No. 2. (1 May 1994), pp. 338-342.
    by T Haller, M Ortner, E Gnaiger
    posted to technique sgtcnih respiration mitochondria flux diauxic by raiyar on 2007-04-06 15:05:15 as **** along with 1 group steinmetzlab
  • Metabolic modeling of microbial strains in silico.
    Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186.
    by MW Covert, CH Schilling, I Famili, JS Edwards, II Goryanin, E Selkov, BO Palsson
    posted to systems review network model metabolic integration flux bioinformatics by raiyar on 2007-01-24 17:05:10 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.
    J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11683-11695.
    by I Thiele, ND Price, TD Vo, BØ Palsson
    posted to network model mitochondria metabolic human flux disease by raiyar on 2007-01-24 17:00:01 as ***** along with 1 group steinmetzlab
  • Global reconstruction of the human metabolic network based on genomic and bibliomic data.
    Proc Natl Acad Sci U S A (31 January 2007)
    by Natalie C C Duarte, Scott A A Becker, Neema Jamshidi, Ines Thiele, Monica L L Mo, Thuy D D Vo, Rohith Srivas, Bernhard O O Palsson
    posted to flux genomics human metabolic metabolic_profiling methodspaper mitochondria model systems by raiyar on 2007-02-06 08:42:32 as read along with 4 people and 1 group jyuh balajis alexg noby steinmetzlab
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to defect flux ht metabolic_profiling mutant network systems by raiyar on 2007-04-27 13:34:19 as **** along with 3 people and 1 group jjray dylan77 ytoya steinmetzlab
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as **** along with 4 people and 1 group jyuh wnpx fishtank jrbanga steinmetzlab
  • Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data.
    J Biol Chem, Vol. 279, No. 38. (17 September 2004), pp. 39532-39540.
    by TD Vo, HJ Greenberg, BO Palsson
    posted to bioinformatics flux ht human metabolic_profiling methodspaper mitochondria systems by raiyar on 2007-05-14 14:18:48 as **** along with 1 person and 1 group kristen steinmetzlab
  • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
    BMC Bioinformatics, Vol. 1 (2000)
    by JS Edwards, BO Palsson
    posted to parts-list network mutant model genes flux deletion bioinformatics analysis by raiyar on 2007-01-25 11:29:42 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Microtubule flux: drivers wanted.
    Curr Opin Cell Biol, Vol. 19, No. 1. (February 2007), pp. 36-42.
    by BH Kwok, TM Kapoor
    posted to flux kinesin-13 kinesin-5 microtubule review by rahulthadani on 2007-07-12 04:38:26 as ** along with 1 person and 1 group rubendrr cytoskeleton-and-afm
  • A Modified Vadose Zone Fluxmeter with Solution Collection Capability
    Vadose Zone J, Vol. 2, No. 4. (1 November 2003), pp. 627-632.
    by Glendon W Gee, Fred Z Zhang, Andy L Ward
    posted to edaphology flux soil vadose water zone by paleorthid on 2006-01-26 06:18:32 as read
  • notes Evaluation of Drainage from Passive Suction and Nonsuction Flux Meters in a Volcanic Clay Soil under Tropical Conditions
    Vadose Zone J, Vol. 4, No. 4. (16 November 2005), pp. 1201-1209.
    by M van der Velde, SR Green, GW Gee, M Vanclooster, BE Clothier
    posted to edaphology flux soil vadose water zone by paleorthid on 2006-01-26 04:36:05 as read
  • Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the
    Biotechnology and Bioengineering, Vol. 86, No. 3. (6 April 2004), pp. 317-331.
    by Sharon J Wiback, Radhakrishnan Mahadevan, B& Bernhard
    posted to flux metabolic mode by okarsligil on 2006-05-02 15:37:54 as ** along with 1 person and 2 groups cate Bioinformatics biospec
  • Carbon dioxide release from the North Pacific abyss during the last deglaciation
    Nature, Vol. 449, No. 7164., pp. 890-893.
    by Eric D Galbraith, Samuel L Jaccard, Thomas F Pedersen, Daniel M Sigman, Gerald H Haug, Mea Cook, John R Southon, Roger Francois
    posted to climate co2 flux glacial lgm ocean pacific paleoclimate by nurban on 2007-10-22 14:19:39 as **
  • An atmospheric perspective on North American carbon dioxide exchange: CarbonTracker
    Proceedings of the National Academy of Sciences, Vol. 104, No. 48. (27 November 2007), pp. 18925-18930.
    by Wouter Peters, Andrew R Jacobson, Colm Sweeney, Arlyn E Andrews, Thomas J Conway, Kenneth Masarie, John B Miller, Lori M Bruhwiler, Gabrielle Petron, Adam I Hirsch, Douglas E Worthy, Guido R van der Werf, James T Randerson, Paul O Wennberg, Maarten C Krol, Pieter P Tans
    posted to assimilation carbon climate co2 flux north-america observations regional terrestrial vegetation by nurban on 2007-12-04 21:33:44 as **
  • Stability of organic carbon in deep soil layers controlled by fresh carbon supply
    Nature, Vol. 450, No. 7167., pp. 277-280.
    by Sébastien Fontaine, Sébastien Barot, Pierre Barré, Nadia Bdioui, Bruno Mary, Cornelia Rumpel
    posted to biomass carbon climate flux sequestration soil by nurban on 2007-11-09 21:02:20 as ** along with 1 person fornstar
  • Ocean carbon sinks and international climate policy
    Energy Policy, Vol. 34, No. 18. (December 2006), pp. 3516-3526.
    by Katrin Rehdanz, Richard S Tol, Patrick Wetzel
    posted to carbon climate co2 emissions flux ocean policy regional by nurban on 2007-10-23 18:05:28 as **
  • A general integrative model for scaling plant growth, carbon flux, and functional trait spectra
    Nature, Vol. 449, No. 7159., pp. 218-222.
    by Brian J Enquist, Andrew J Kerkhoff, Scott C Stark, Nathan G Swenson, Megan C Mccarthy, Charles A Price
    posted to carbon climate dynamics ecology flux model scaling vegetation by nurban on 2007-09-14 20:00:00 as **
  • Anthropogenically enhanced fluxes of water and carbon from the Mississippi River
    Nature, Vol. 451, No. 7177. (24 January 2008), pp. 449-452.
    by Peter A Raymond, Neung-Hwan Oh, Eugene R Turner, Whitney Broussard
    posted to agriculture anthropogenic carbon climate co2 dic evaporation fertilization flux hydrology land-use observations precipitation regional us water by nurban on 2008-02-05 18:23:43 as **
  • Ground warming patterns in the Northern Hemisphere during the last five centuries
    Earth and Planetary Science Letters, Vol. 227, No. 3-4. (15 November 2004), pp. 169-177.
    by Hugo Beltrami, Evelise Bourlon
    posted to borehole climate flux heat land northern-hemisphere observations paleoclimate proxy temperature by nurban on 2007-11-06 15:34:46 as **
  • Biophysical controls on organic carbon fluxes in fluvial networks
    Nature Geosci, Vol. 1, No. 2. (February 2008), pp. 95-100.
    by Tom J Battin, Louis A Kaplan, Stuart Findlay, Charles S Hopkinson, Eugenia Marti, Aaron I Packman, Denis J Newbold, Francesc Sabater
    posted to terrestrial hydrology flux ecology climate chemistry carbon biology by nurban on 2008-04-25 13:12:10 as **
  • 1851–2004 annual heat budget of the continental landmasses
    Geophysical Research Letters, Vol. 33 (22 February 2006), L04707.
    by Shaopeng Huang
    posted to borehole climate flux heat land observations paleoclimate proxy by nurban on 2007-11-06 15:32:58 as **
  • Generation of hyper climate modes
    Geophysical Research Letters, Vol. 35 (19 January 2008), L02706.
    by D Dommenget, M Latif
    posted to atmosphere centennial climate dynamics flux heat millennial model ocean regional surface teleconnection temperature tropics by nurban on 2008-01-23 14:42:40 as **
  • Continental heat gain in the global climate system
    Geophysical Research Letters, Vol. 29, No. 8. (17 April 2002), 1167.
    by Hugo Beltrami, Jason E Smerdon, Henry N Pollack, Shaopeng Huang
    posted to borehole climate flux heat land observations paleoclimate proxy by nurban on 2007-11-06 15:32:17 as **
  • Carbon allocation in forest ecosystems
    Global Change Biology, Vol. 13, No. 10. (2007), pp. 2089-2109.
    by Creighton M Litton, James W Raich, Michael G Ryan
    posted to biomass carbon climate co2 ecology flux vegetation by nurban on 2007-10-04 18:15:28 as ** along with 1 person AlisonCCB
  • Southern Ocean sea-ice extent, productivity and iron flux over the past eight glacial cycles
    Nature, Vol. 440, No. 7083., pp. 491-496.
    by EW Wolff, H Fischer, F Fundel, U Ruth, B Twarloh, GC Littot, R Mulvaney, R Rã¶thlisberger, M de Angelis, CF Boutron, M Hansson, U Jonsell, MA Hutterli, F Lambert, P Kaufmann, B Stauffer, TF Stocker, JP Steffensen, M Bigler, ML Siggaard-Andersen, R Udisti, S Becagli, E Castellano, M Severi, D Wagenbach, C Barbante, P Gabrielli, V Gaspari
    posted to biomass climate dms flux glacial ice iron observations paleoclimate phytoplankton productivity proxy sea-ice by nurban on 2007-10-15 15:26:09 as **
  • A direct carbon budgeting approach to infer carbon sources and sinks. Design and synthetic application to complement the NACP observation network
    Tellus B, Vol. 58, No. 5. (November 2006), pp. 366-375.
    by Cyril Crevoisier, Manuel Gloor, Erwan Gloaguen, Larry W Horowitz, Jorge L Sarmiento, Colm Sweeney, Pieter P Tans
    posted to carbon climate co2 design flux kriging model network spatial statistics weather by nurban on 2007-10-22 14:53:43 as **
  • Assimilation of global MODIS leaf area index retrievals within a terrestrial biosphere model
    Geophysical Research Letters, Vol. 34 (7 August 2007), L15402.
    by J Demarty, F Chevallier, AD Friend, N Viovy, Shilong Piao, P Ciais
    posted to assimilation carbon climate co2 flux satellite vegetation by nurban on 2007-08-20 13:12:25 as **
  • A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli.
    J Biol Chem, Vol. 278, No. 47. (21 November 2003), pp. 46446-46451.
    by E Fischer, U Sauer
    posted to flux metabolic by Norlins on 2006-02-07 05:24:03 as ****
  • Experimental identification and quantification of glucose metabolism in seven bacterial species.
    J Bacteriol, Vol. 187, No. 5. (March 2005), pp. 1581-1590.
    by T Fuhrer, E Fischer, U Sauer
    posted to flux metabolic by Norlins on 2006-02-07 05:20:38 as ****
  • Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
    Nature Genetics, Vol. 37, No. 6. (08 May 2005), pp. 636-640.
    by Eliane Fischer, Uwe Sauer
    posted to flux metabolic by Norlins on 2006-02-07 05:18:50 as ****
  • Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. II. Dynamic response to famine and feast, activation of the methylglyoxal pathway and oscillatory behaviour.
    Microbiology, Vol. 151, No. Pt 3. (March 2005), pp. 707-716.
    by J Weber, A Kayser, U Rinas
    posted to adaptation flux metabolic by Norlins on 2006-02-07 04:17:40 as ****
  • Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate-dependent metabolic efficiency at steady state.
    Microbiology, Vol. 151, No. Pt 3. (March 2005), pp. 693-706.
    by A Kayser, J Weber, V Hecht, U Rinas
    posted to flux metabolic by Norlins on 2006-02-07 04:16:32 as ****
  • Respirometric (13)C flux analysis, Part I: Design, construction and validation of a novel multiple reactor system using on-line membrane inlet mass spectrometry.
    Metab Eng (14 July 2006)
    by Tae Hoon H Yang, Christoph Wittmann, Elmar Heinzle
    posted to flux measurement by miyaoku on 2006-07-21 04:29:05 as ***
  • 13C labeling experiments at metabolic nonstationary conditions: an exploratory study
    BMC Bioinformatics, Vol. 9 (18 March 2008), 152.
    by Sebastian A Wahl, Katharina Noeh, Wolfgang Wiechert
    posted to flux metabolomics modeling by marpin on 2008-03-20 07:24:02 as ** along with 2 people Ema StarStrider
  • A three-dimensional model of the human airway tree
    J Appl Physiol, Vol. 87, No. 6. (1 December 1999), pp. 2207-2217.
    by Hiroko Kitaoka, Ryuji Takaki, Bela Suki
    posted to dynamics flow flux lung networks by marcio on 2008-03-28 02:40:57 as ** along with 1 person maburkitt
  • Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
    Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12663-12668.
    by QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabasi, ZN Oltvai
    posted to analysis balance flux metabolic networks by marcio on 2007-12-01 15:34:11 as **
  • Avalanches and power-law behaviour in lung inflation
    Nature, Vol. 368, No. 6472. (14 April 1994), pp. 615-618.
    by Bela Suki, Albert-Laszlo Barabasi, Zoltan Hantos, Ferenc Petak, Eugene H Stanley
    posted to dynamics flow flux lung by marcio on 2008-03-29 21:09:46 as **
  • Optimality and evolutionary tuning of the expression level of a protein
    Nature, Vol. 436, No. 7050., pp. 588-592.
    by Erez Dekel, Uri Alon
    posted to flux metabolic networks by marcio on 2008-03-23 14:21:33 as ** along with 3 people rklancer guyshinar comb
  • From bit to it: How a complex metabolic network transforms information into living matter
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Andreas Wagner
    posted to analysis flux metabolic by marcio on 2007-12-17 02:18:16 as **
  • Co-regulation of metabolic genes is better explained by flux coupling than by network distance.
    PLoS Comput Biol, Vol. 4, No. 1. (January 2008)
    by RA Notebaart, B Teusink, RJ Siezen, B Papp
    posted to co-regulation flux metabolic network by maralena on 2008-01-31 12:57:38 as ** along with 1 person jjray
  • Wave- and tidally-driven flow and sediment flux across a fringing coral reef: Southern Molokai, Hawaii
    Continental Shelf Research, Vol. 24, No. 12. (August 2004), pp. 1397-1419.
    by CD Storlazzi, AS Ogston, MH Bothner, ME Field, MK Presto
    posted to coral cross-shore flux reefs sediment suspended tides transport waves by manu974 on 2006-01-31 08:55:15 as ***
  • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    Metabolic Engineering, Vol. 5, No. 4. (October 2003), pp. 264-276.
    by R Mahadevan, CH Schilling
    posted to analysis flux variability by lylu on 2007-12-30 15:35:34 as *** along with 1 person and 1 group JeremyZucker MetabolicModeling
  • Dynamics of Fluxes Through Photosynthetic Complexes in Response to Changing Light and Inorganic Carbon Acclimation in Synechococcus elongatus
    Photosynthesis Research, Vol. 85, No. 3. (September 2005), pp. 341-357.
    by Tyler Mackenzie, Jeanette Johnson, Douglas Campbell
    posted to campbell flux synechococcus by llchristensen on 2008-03-24 21:26:55 as **
  • An old paper revisited: "A mathematical model of carbohydrate energy metabolism. Interaction between glycolysis, the Krebs cycle and the H-transporting shuttles at varying ATPases load" by V.V. Dynnik, R. Heinrich and E.E. Sel'kov.
    J Theor Biol (15 January 2008)
    by Christine Nazaret, Jean-Pierre P Mazat
    posted to atp cycle flux glycolysis harlan h-transporting krebs metabolism model old paper russian shuttles tca by lachesis on 2008-03-10 06:48:30 as **
  • Sites of flux: imagining space in the dance-architectures of The Changing Room and Sea Unsea
    Personal and Ubiquitous Computing, Vol. 12, No. 5. (1 June 2008), pp. 383-390.
    by Mette Thomsen
    posted to ontology learning interaction flux architecture by jago on 2008-05-05 09:54:50 as **
  • Control of flux through the citric acid cycle and the glyoxylate bypass in Escherichia coli.
    Biochem Soc Symp, Vol. 54 (1987), pp. 17-31.
    by WH Holms
    posted to flux metabolism by imouthesmp on 2006-06-12 07:19:23 as ***
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