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Tag expression [896 articles]

Recent papers classified by the tag expression.
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to divergence evolution expression gene promoter by zwang on 2008-01-15 16:40:20 as ** along with 8 people and 2 groups Jporci balicea kengg biomcgary cisevol caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Evolution of chromosome organization driven by selection for reduced gene expression noise
    Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949.
    by Nizar N Batada, Laurence D Hurst
    posted to evolution expression gene selection by zwang on 2007-08-09 04:07:24 as * along with 5 people and 2 groups jjray dpollard ealloza djkt lusk EisenLab BioinfoCIPF
  • Genes overexpressed in different human solid cancers exhibit different tissue-specific expression profiles
    PNAS, Vol. 104, No. 32. (7 August 2007), pp. 13122-13127.
    by Jacob Bock-Axelsen, Joseph Lotem, Leo Sachs, Eytan Domany
    posted to expression gene profile tissue by zwang on 2007-08-09 04:05:37 as * along with 1 person jyuh
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression gene promoter synthetic by zwang on 2007-11-15 01:09:19 as * along with 13 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans discreteonyxorb cabbagezs Ema EisenLab SynBioSys
  • Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
    Science (27 September 2007), 1146647.
    by Amy L Toth, Kranthi Varala, Thomas C Newman, Fernando E Miguez, Stephen K Hutchison, David A Willoughby, Jan F Simons, Michael Egholm, James H Hunt, Matthew E Hudson, Gene E Robinson
    posted to evolution expression gene by zwang on 2007-10-11 02:22:42 as ** along with 3 people stajich niallhaslam ale
  • High-Throughput In Vivo Analysis of Gene Expression in Caenorhabditis elegans
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e237.
    by Rebecca Hunt-Newbury, Ryan Viveiros, Robert Johnsen, Allan Mah, Dina Anastas, Lily Fang, Erin Halfnight, David Lee, John Lin, Adam Lorch, Sheldon Mckay, Mark H Okada, Jie Pan, Ana K Schulz, Domena Tu, Kim Wong, Z Zhao, Andrey Alexeyenko, Thomas Burglin, Eric Sonnhammer, Ralf Schnabel, Steven J Jones, Marco A Marra, David L Baillie, Donald G Moerman
    posted to expression gene invivo by zwang on 2007-09-17 10:13:59 as * along with 1 person dlmace
  • Toward high-resolution prediction and design of transmembrane helical protein structures
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15682-15687.
    by P Barth, J Schonbrun, D Baker
    posted to expression prediction protein structure by zwang on 2007-10-08 19:01:24 as * along with 3 people hmk biehl Ema
  • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 776-790.
    by Alexander Serganov, Dinshaw J Patel
    posted to expression gene regulation ribozyme rna by zwang on 2007-11-01 07:15:05 as *** along with 3 people and 3 groups austin dbikard jmrivort G-quadruplex Supramolecular SynBioSys
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to evolution expression gene transcription by zwang on 2007-09-18 06:18:00 as ** along with 8 people and 2 groups dpollard djkt joepickrell Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution
  • Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
    Nat Meth, Vol. 4, No. 9. (2007), pp. 747-753.
    by Pierre-Alain Girod, Duc-Quang Nguyen, David Calabrese, Stefania Puttini, Melanie Grandjean, Danielle Martinet, Alexandre Regamey, Damien Saugy, Jacques S Beckmann, Philipp Bucher, Nicolas Mermod
    posted to expression gene genome-wide mammal prediction by zwang on 2007-08-31 16:22:46 as * along with 2 people sebastien_vigneau uz_labu_laimi
  • High-throughput cloning and expression in recalcitrant bacteria
    Nat Meth, Vol. 4, No. 9. (2007), pp. 705-707.
    by Eric R Geertsma, Bert Poolman
    posted to bacterial expression protein by zwang on 2007-08-31 16:21:56 as * along with 2 people Yanno jyuh
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to dynamics expression gene network regulatory by zwang on 2007-11-05 14:33:49 as * along with 5 people and 1 group cwbrown lshaw shigepong heliopais hpaces EisenLab
  • A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 801-806.
    by Siobhan M Brady, David A Orlando, Ji-Young Lee, Jean Y Wang, Jeremy Koch, Jose R Dinneny, Daniel Mace, Uwe Ohler, Philip N Benfey
    posted to clustering expression fluorescent microarray by zwang on 2007-11-05 14:32:26 as * along with 2 people kengg cjeans
  • notes Is tropomyosin an allergen in Anisakis?
    Allergy, Vol. 55, No. 9. (September 2000), pp. 898-899.
    by JA Asturias, E Eraso, I Moneo, A Martínez
    posted to allergen allergy anisakis expression immunoscreening kdid0003 tropomyosin by Yukihiro on 2008-02-14 06:32:17 as read
  • notes Molecular cloning and expression of two new allergens from Anisakis simplex
    Parasitology Research, Vol. 100, No. 6. (May 2007), pp. 1233-1241.
    by Kobayashi, Yukihiro, Ishizaki, Shoichiro, Shimakura, Kuniyoshi, Nagashima, Yuji, Shiomi, Kazuo
    posted to allergen anisakis expression immunoscreening kdid9973 protease-inhibitor sxpral-2 by Yukihiro on 2008-02-14 04:36:23 as read
  • notes Cloning and expression of a biologically active Anisakis simplex allergen Ani s 1 in the yeast Pichia pastoris.
    Mol Biochem Parasitol, Vol. 154, No. 1. (July 2007), pp. 115-118.
    by R Rodriguez-Perez, ML Caballero, M Gonzalez-Munoz, A Rodriguez-Mahillo, I Moneo
    posted to allergen allergy anisakis expression kdid0234 yeast by Yukihiro on 2008-02-13 16:40:45 as read
  • notes Cloning and characterisation of the Anisakis simplex allergen Ani s 4 as a cysteine-protease inhibitor.
    Int J Parasitol, Vol. 37, No. 8-9. (July 2007), pp. 907-917.
    by AI Rodriguez-Mahillo, M Gonzalez-Muñoz, F Gomez-Aguado, R Rodriguez-Perez, MT Corcuera, ML Caballero, I Moneo
    posted to allergen allergy anisakis expression kdid0204 protease-inhibitor by Yukihiro on 2008-02-13 16:40:06 as read
  • notes Molecular cloning and characterization of an IgE-reactive protein from Anisakis simplex: Ani s 1.
    Mol Biochem Parasitol, Vol. 107, No. 2. (15 April 2000), pp. 263-268.
    by I Arrieta, Del M Barrio, L Vidarte, Del V Pozo, C Pastor, J Gonzalez-Cabrero, B Cárdaba, M Rojo, A Mínguez, I Cortegano, S Gallardo, E Aceituno, P Palomino, F Vivanco, C Lahoz
    posted to allergen allergy anisakis expression kdid0002 by Yukihiro on 2008-02-13 16:36:02 as **
  • notes Cloning and high level expression in Escherichia coli of an Anisakis simplex tropomyosin isoform.
    Mol Biochem Parasitol, Vol. 108, No. 2. (May 2000), pp. 263-267.
    by JA Asturias, E Eraso, A Martínez
    posted to allergen anisakis expression kdid0001 tropomyosin by Yukihiro on 2008-02-13 16:14:57 as **
  • Expression of HNF-4alpha (MODY1), HNF-1beta (MODY5), and HNF-1alpha (MODY3) proteins in the developing mouse pancreas.
    Gene Expr Patterns, Vol. 8, No. 2. (January 2008), pp. 96-106.
    by T Nammo, K Yamagata, T Tanaka, T Kodama, FM Sladek, K Fukui, F Katsube, Y Sato, J Miyagawa, I Shimomura
    posted to expression hnf4 pancreas by yevishere on 2008-01-02 23:23:42 as ** along with 1 person FrancesSladek
  • Phenotypic screening of hepatocyte nuclear factor (HNF) 4-gamma receptor knockout mice.
    Biochem Biophys Res Commun, Vol. 349, No. 2. (20 October 2006), pp. 825-832.
    by AK Gerdin, VV Surve, M Jönsson, M Bjursell, M Björkman, A Edenro, M Schuelke, A Saad, S Bjurström, EJ Lundgren, M Snaith, R Fransson-Steen, J Törnell, AL Berg, M Bohlooly-Y
    posted to expression hnf4gamma knockout by yevishere on 2008-01-03 23:33:55 as **
  • The expression profiles of nuclear receptors in the developing and adult kidney.
    Mol Endocrinol, Vol. 20, No. 12. (December 2006), pp. 3412-3420.
    by JM Suh, CT Yu, K Tang, T Tanaka, T Kodama, MJ Tsai, SY Tsai
    posted to expression hnf4 kidney by yevishere on 2008-01-03 23:33:03 as **
  • Tissue-specific transcription factor HNF4alpha inhibits cell proliferation and induces apoptosis in the pancreatic INS-1 beta-cell line.
    Biol Chem, Vol. 388, No. 1. (January 2007), pp. 91-106.
    by S Erdmann, S Senkel, T Arndt, B Lucas, J Lausen, L Klein-Hitpass, GU Ryffel, H Thomas
    posted to expression hnf4 pancreas by yevishere on 2008-01-03 23:28:33 as **
  • Hepatic HNF4alpha deficiency induces periportal expression of glutamine synthetase and other pericentral enzymes.
    Hepatology, Vol. 45, No. 2. (February 2007), pp. 433-444.
    by VS Stanulović, I Kyrmizi, M Kruithof-de Julio, M Hoogenkamp, JL Vermeulen, JM Ruijter, I Talianidis, TB Hakvoort, WH Lamers
    posted to expression hnf4 targets by yevishere on 2008-01-03 23:27:20 as **
  • Characterization of three growth hormone-responsive transcription factors preferentially expressed in adult female liver.
    Endocrinology, Vol. 148, No. 7. (July 2007), pp. 3327-3337.
    by EV Laz, MG Holloway, CS Chen, DJ Waxman
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:20:58 as **
  • Gene expression profiling and differentiation assessment in primary human hepatocyte cultures, established hepatoma cell lines, and human liver tissues.
    Toxicol Appl Pharmacol, Vol. 222, No. 1. (1 July 2007), pp. 42-56.
    by KM Olsavsky, JL Page, MC Johnson, H Zarbl, SC Strom, CJ Omiecinski
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:14:38 as **
  • A set of UV-inducible autolytic vectors for high throughput screening.
    J Biotechnol (1 September 2006)
    by Shuang Li, Lihua Xu, Hui Hua, Chuan Ren, Zhanglin Lin
    posted to autolytic expression by yeastyboy on 2006-12-01 16:08:58 as **
  • Genetically modified pigs produced with a nonviral episomal vector
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17672-17677.
    by Stefano Manzini, Alessia Vargiolu, Isa M Stehle, Maria L Bacci, Maria G Cerrito, Roberto Giovannoni, Augusta Zannoni, Maria R Bianco, Monica Forni, Pierluigi Donini, Michele Papa, Hans J Lipps, Marialuisa Lavitrano
    posted to episomal expression mammalian protein by yeastyboy on 2006-12-01 12:01:27 as **
  • Heat-inducible autolytic vector for high-throughput screening.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 319-323.
    by L Xu, S Li, C Ren, Z Cai, Z Lin
    posted to autolytic expression method protein by yeastyboy on 2006-12-01 09:10:35 as **
  • The timing of developmental transitions in plants.
    Cell, Vol. 125, No. 4. (19 May 2006), pp. 655-664.
    by I Bäurle, C Dean
    posted to arabidopsis comparative_study expression flowering by xwbcn on 2006-07-20 08:41:17 as *** along with 2 people tardigrade Happybene
  • Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis.
    Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232.
    by C Benedict, M Geisler, J Trygg, N Huner, V Hurry
    posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as ** along with 1 person natstreet
  • Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon.
    Proc Natl Acad Sci U S A, Vol. 104, No. 52. (26 December 2007), pp. 21002-21007.
    by F Novillo, J Medina, J Salinas
    posted to cold expression gene_family regulation by xwbcn on 2008-01-17 03:59:38 as **
  • Genome-wide analysis of spatial and temporal gene expression in rice panicle development
    The Plant Journal, Vol. 46, No. 3. (May 2006), pp. 503-511.
    by Ikuyo Furutani, Shin Sukegawa, Junko Kyozuka
    posted to chip expression flowering microarray rice by xwbcn on 2006-05-30 18:56:54 as ***
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to evolution expression gene_family genome microarray by xwbcn on 2007-02-25 15:03:41 as ** along with 4 people gpalidwor shigepong cjeans ghattem
  • Promoter features related to tissue specificity as measured by Shannon entropy.
    Genome Biol, Vol. 6, No. 4. (2005)
    by J Schug, WP Schuller, C Kappen, JM Salbaum, M Bucan, CJ Stoeckert
    posted to expression human promoter shannon_entropy by xwbcn on 2007-06-07 04:04:55 as ** along with 1 person jschug
  • An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.
    Plant Cell, Vol. 18, No. 12. (December 2006), pp. 3617-3634.
    by R Deeken, JC Engelmann, M Efetova, T Czirjak, T Müller, WM Kaiser, O Tietz, M Krischke, MJ Mueller, K Palme, T Dandekar, R Hedrich
    posted to arabidopsis expression tumor by xwbcn on 2007-05-17 04:04:44 as **
  • Antisense transcripts with rice full-length cDNAs.
    Genome Biol, Vol. 5, No. 1. (2003)
    by N Osato, H Yamada, K Satoh, H Ooka, M Yamamoto, K Suzuki, J Kawai, P Carninci, Y Ohtomo, K Murakami, K Matsubara, S Kikuchi, Y Hayashizaki
    posted to antisense expression genome rice sense by xwbcn on 2006-10-08 13:59:54 as *****
  • Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction.
    PLoS Genet, Vol. 1, No. 2. (August 2005)
    by C Seoighe, C Gehring, LD Hurst
    posted to arabidopsis chip expression flowering intron microarray pollen by xwbcn on 2006-08-01 13:47:09 as ***
  • Characterization of the maize endosperm transcriptome and its comparison to the rice genome.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1932-1937.
    by J Lai, N Dey, CS Kim, AK Bharti, S Rudd, KF Mayer, BA Larkins, P Becraft, J Messing
    posted to comparative_study expression maize rice by xwbcn on 2006-05-16 19:50:32 as ***
  • From the Cover: Overdominant quantitative trait loci for yield and fitness in tomato
    PNAS, Vol. 103, No. 35. (29 August 2006), pp. 12981-12986.
    by Yaniv Semel, Jonathan Nissenbaum, Naama Menda, Michael Zinder, Uri Krieger, Noa Issman, Tzili Pleban, Zachary Lippman, Amit Gur, Dani Zamir
    posted to expression genome heterosis by xwbcn on 2007-02-28 11:02:59 as **
  • Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    Genome Biology, Vol. 8 (11 January 2007), R7.
    by Rodrigo A Gutierrez, Laurence Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E Shasha, Gloria M Coruzzi
    posted to arabidopsis chip comparative_study expression gene_ontology genome microarray networks transcriptome by xwbcn on 2007-03-24 08:24:08 as **
  • Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
    BMC Bioinformatics, Vol. 7 (04 July 2006), 330.
    by Seon-Young Kim, Yongsung Kim
    posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as ** along with 2 people jfr Ao_Li2007
  • Molecular characterization and expression of four cDNAs encoding sucrose synthase from green bamboo Bambusa oldhamii
    New Phytologist, Vol. 170, No. 1. (April 2006), pp. 53-63.
    by Wen-Bin Chiu, Chiou-Hong Lin, Chun-Ju Chang, Meng-Hsun Hsieh, Ai-Yu Wang
    posted to and bamboo bambusa cdnas characterization encoding expression four from green molecular of oldhamii sucrose synthase by xixibio on 2006-04-19 13:55:54 as **
  • Control of expression and autoregulation of AGL15, a member of the MADS-box family
    The Plant Journal, Vol. 41, No. 4. (February 2005), pp. 583-594.
    by Cong Zhu, Sharyn E Perry
    posted to agl15 and autoregulation control expression of by xixibio on 2006-04-19 13:48:17 as **
  • Calculating the statistical significance of changes in pathway activity from gene expression data.
    Stat Appl Genet Mol Biol, Vol. 3 (2004)
    by J Rahnenführer, FS Domingues, J Maydt, T Lengauer
    posted to expression metabolism pathway_analysis statistics by xingxu on 2007-12-27 21:02:20 as ** along with 1 person dragonrez
  • Cell-to-Cell Stochastic Variation in Gene Expression Is a Complex Genetic Trait.
    PLoS genetics, Vol. 4, No. 4. (April 2008)
    by J Ansel, H Bottin, C Rodriguez-Beltran, C Damon, M Nagarajan, S Fehrmann, J François, G Yvert
    posted to cancer expression variability by xingxu on 2008-04-17 13:20:31 as **
  • Recruitment to the nuclear periphery can alter expression of genes in human cells.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by LE Finlan, D Sproul, I Thomson, S Boyle, E Kerr, P Perry, B Ylstra, JR Chubb, WA Bickmore
    posted to expression nuclear_localization by xingxu on 2008-04-17 12:49:17 as **
  • The influence of genetic variation on gene expression
    Genome Res., Vol. 17, No. 12. (1 December 2007), pp. 1707-1716.
    by Rohan B Williams, Eva K Chan, Mark J Cowley, Peter F Little
    posted to expression review variability by xingxu on 2007-12-27 00:53:29 as ** along with 5 people balicea giovanni ggorjan lp2 dmachugh
  • Adaptive Gene Expression Divergence Inferred from Population Genomics
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e187.
    by Alisha K Holloway, Mara K Lawniczak, Jason G Mezey, David J Begun, Corbin D Jones
    posted to evolution expression genomics population by xingxu on 2007-12-27 00:50:14 as ** along with 5 people brant Garamonfok caseybrown sb_journal_club emptyhb
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to epistasis expression regulation by xingxu on 2007-11-29 03:49:25 as ** along with 7 people and 6 groups dpollard xico nickluscombe zwang lizabeth dejori naegele Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
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