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Tag eqtl [77 articles]

Recent papers classified by the tag eqtl.
  • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by C Wu, DL Delano, N Mitro, SV Su, J Janes, P McClurg, S Batalov, GL Welch, J Zhang, AP Orth, JR Walker, RJ Glynne, MP Cooke, JS Takahashi, K Shimomura, A Kohsaka, J Bass, E Saez, T Wiltshire, AI Su
    posted to eqtl by thomaskelder on 2008-05-14 16:09:29 as ** along with 1 person caseybrown
  • eQED: an efficient method for interpreting eQTL associations using protein networks
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Silpa Suthram, Andreas Beyer, Richard M Karp, Yonina Eldar, Trey Ideker
    posted to eqtl by thomaskelder on 2008-05-14 15:45:07 as ** along with 7 people APRegier ptrobajo jyuh caseybrown zwang biomcgary jo_davies
  • Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wei Sun, Shinsheng Yuan, Ker C Li
    posted to quantitative_genetics qtl methods eqtl by stajich on 2008-07-21 05:55:45 as ** along with 3 people and 1 group caseybrown ddunbar natstreet Berkeley Mycology
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
    posted to eqtl by smgomez on 2008-03-24 19:46:00 as ** along with 5 people and 1 group caseybrown jyuh dpollard raiyar xingxu EisenLab
  • Cis-acting regulatory variation in the human genome.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 647-650.
    by T Pastinen, TJ Hudson
    posted to eqtl review by qfwills on 2007-06-24 20:36:32 as read along with 2 people vplagnol mimulus_99
  • Influence of human genome polymorphism on gene expression.
    Hum Mol Genet, Vol. 15 Spec No 1 (15 April 2006)
    by T Pastinen, B Ge, TJ Hudson
    posted to eqtl review by qfwills on 2007-06-24 20:33:26 as read along with 4 people vplagnol qmwwallace jo_davies mimulus_99
  • The importance and identification of regulatory polymorphisms and their mechanisms of action
    Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Vol. 1762, No. 1. (January 2006), pp. 17-28.
    by Paul R Buckland
    posted to eqtl review by qfwills on 2007-06-24 21:01:12 as **
  • Genetics of global gene expression
    Nature Reviews Genetics, Vol. 7, No. 11. (2006), pp. 862-872.
    by Matthew V Rockman, Leonid Kruglyak
    posted to eqtl review by qfwills on 2007-06-24 20:58:23 as read along with 16 people and 10 groups jyuh dpollard tardigrade balicea dchughes nickluscombe neveaire aswin ealloza giovanni mlovell grahamc lp2 emarker natstreet mimulus_99 Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID EBI-regulation BioinfoCIPF GeschwindLab Genetics-of-Gambling
  • The quantitative genetics of transcription.
    Trends Genet, Vol. 21, No. 11. (November 2005), pp. 616-623.
    by G Gibson, B Weir
    posted to eqtl review by qfwills on 2007-06-24 20:55:12 as read along with 4 people qmwwallace jo_davies mimulus_99 caseybrown
  • Genetics of gene expression surveyed in maize, mouse and man.
    Nature, Vol. 422, No. 6929. (20 March 2003), pp. 297-302.
    by EE Schadt, SA Monks, TA Drake, AJ Lusis, N Che, V Colinayo, TG Ruff, SB Milligan, JR Lamb, G Cavet, PS Linsley, M Mao, RB Stoughton, SH Friend
    posted to eqtl genetical genomics by parkcc on 2007-10-01 21:54:21 as ***** along with 6 people and 1 group adepace koller lp2 hms jo_davies mcgannd EisenLab
  • Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 243-253.
    by Norbert Hubner, Caroline A Wallace, Heike Zimdahl, Enrico Petretto, Herbert Schulz, Fiona Maciver, Michael Mueller, Oliver Hummel, Jan Monti, Vaclav Zidek, Alena Musilova, Vladimir Kren, Helen Causton, Laurence Game, Gabriele Born, Sabine Schmidt, Anita Müller, Stuart A Cook, Theodore W Kurtz, John Whittaker, Michal Pravenec, Timothy J Aitman
    posted to eqtl by neveaire on 2008-02-23 01:35:27 as ** along with 6 people thomaskelder jo_davies snuppepuppan kentsis samal caseybrown
  • Genetic interactions between polymorphisms that affect gene expression in yeast
    Nature, Vol. 436, No. 7051., pp. 701-703.
    by Rachel B Brem, John D Storey, Jacqueline Whittle, Leonid Kruglyak
    posted to eqtl epistasis by mrockman on 2008-07-07 22:49:14 as ** along with 3 people and 3 groups JAShapiro dpollard cisevol RockmanLab EisenLab cis-regulatory-evolution
  • Multiple Locus Linkage Analysis of Genomewide Expression in Yeast
    PLoS Biology, Vol. 3, No. 8. (1 August 2005), e267.
    by John D Storey, Joshua M Akey, Leonid Kruglyak
    posted to eqtl epistasis by mrockman on 2008-07-07 22:45:46 as ** along with 1 person and 1 group RMGraze RockmanLab
  • Genetic dissection of transcriptional regulation in budding yeast
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755.
    by Rachel B Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak
    posted to eqtl yeast by mimulus_99 on 2007-11-14 17:49:08 as read along with 9 people and 3 groups RMGraze JAShapiro brant dpollard adepace oannes raiyar lp2 jo_davies EisenLab Regulomics_UCHSC steinmetzlab
  • Genetic analysis of genome-wide variation in human gene expression.
    Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747.
    by M Morley, CM Molony, TM Weber, JL Devlin, KG Ewens, RS Spielman, VG Cheung
    posted to eqtl human by mimulus_99 on 2007-11-14 19:01:46 as read along with 9 people and 1 group caseybrown snuppepuppan kentsis RMGraze adepace qfwills vplagnol nagendraproj jo_davies EisenLab
  • Statistical Power of Expression Quantitative Trait Loci for Mapping of Complex Trait Loci in Natural Populations
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2201-2216.
    by Paul Schliekelman
    posted to power eqtl association by lp2 on 2008-05-19 13:36:10 as ** along with 2 people jyuh caseybrown
  • Mapping quantitative trait loci for expression abundance.
    Genetics, Vol. 176, No. 1. (May 2007), pp. 611-623.
    by Z Jia, S Xu
    posted to eqtl by jyuh on 2008-05-16 02:34:50 as **
  • Genomics and genome-wide association studies: An integrative approach to expression QTL mapping
    Genomics, Vol. In Press, Corrected Proof
    by James H Degnan, Jessica Lasky-Su, Benjamin A Raby, Mousheng Xu, Cliona Molony, Eric E Schadt, Christoph Lange
    posted to gwa eqtl by jyuh on 2008-07-17 17:29:52 as ** along with 1 person natstreet
  • Genetical genomics in humans and model organisms.
    Trends Genet, Vol. 21, No. 7. (July 2005), pp. 377-381.
    by DJ de Koning, CS Haley
    posted to analysis eqtl by jo_davies on 2007-08-21 13:19:49 as *** along with 2 people fisherp qmwwallace
  • Statistical Methods for Expression Quantitative Trait Loci (eQTL) Mapping
    Biometrics, Vol. 62, No. 1. (March 2006), pp. 19-27.
    by Kendziorski, , Chen, , Yuan, , Lan, , Attie,
    posted to analysis eqtl by jo_davies on 2007-08-07 16:49:37 as *** along with 2 people ccots natstreet
  • A Statistical Framework for Expression Quantitative Trait Loci (eQTL) Mapping
    Genetics (29 July 2007), genetics.107.071407.
    by Meng Chen, Christina Kendziorski
    posted to analysis eqtl by jo_davies on 2007-08-21 12:22:41 as *** along with 2 people caseybrown natstreet
  • A review of statistical methods for expression quantitative trait loci mapping.
    Mamm Genome, Vol. 17, No. 6. (June 2006), pp. 509-517.
    by C Kendziorski, P Wang
    posted to eqtl statistics by jmjimenez on 2007-12-30 00:04:52 as *** along with 1 person fisherp
  • Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1441-1450.
    by Marilyn A West, Kyunga Kim, Daniel J Kliebenstein, Hans van Leeuwen, Richard W Michelmore, RW Doerge, Dina A St. Clair
    posted to arabidopsis eqtl by jmjimenez on 2007-12-29 23:46:28 as read along with 3 people and 1 group dpollard natstreet caseybrown EisenLab
  • Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
    PNAS, Vol. 104, No. 5. (30 January 2007), pp. 1708-1713.
    by Joost J Keurentjes, Jingyuan Fu, Inez R Terpstra, Juan M Garcia, Guido van den Ackerveken, Basten L Snoek, Anton J Peeters, Dick Vreugdenhil, Maarten Koornneef, Ritsert C Jansen
    posted to arabidopsis eqtl by jmjimenez on 2007-12-29 23:42:51 as read along with 2 people natstreet caseybrown
  • Identifying Trait Clusters by Linkage Profiles: Application in Genetical Genomics.
    Bioinformatics (29 February 2008)
    by Joshua N N Sampson, Steven G G Self
    posted to eqtl by huali on 2008-03-25 21:55:00 as **
  • WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior.
    Nat Neurosci, Vol. 7, No. 5. (May 2004), pp. 485-486.
    by EJ Chesler, L Lu, J Wang, RW Williams, KF Manly
    posted to eqtl webqtl by breden to the group FAB-lab on 2006-10-01 02:16:07 as ** along with 1 person and 1 group fisherp SFUAntibodyResearch
  • The Role of Cis-Regulatory Motifs and Genetical Control of Expression in the Divergence of Yeast Duplicate Genes.
    Mol Biol Evol (10 September 2007)
    by Lindsey J J Leach, Ze Zhang, Chenqi Q Q Lu, Michael J J Kearsey, Zewei W W Luo
    posted to yeast eqtl by brant to the group EisenLab on 2007-09-18 17:11:22 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Genetic complexity and quantitative trait loci mapping of yeast morphological traits.
    PLoS Genet, Vol. 3, No. 2. (23 February 2007)
    by S Nogami, Y Ohya, G Yvert
    posted to yeast round_robin qtl morphology in_depth eqtl eisen_journal_club devin_presented by dpollard to the group EisenLab on 2007-03-23 19:26:07 as *** along with 1 person caseybrown
  • Genetical genomics: use all data
    BMC Genomics, Vol. 8 (12 March 2007), 69.
    by Miguel Perez-Enciso, Jose R Quevedo, Antonio Bahamonde
    posted to eqtl gg methods by ccots on 2007-03-20 01:58:57 as *** along with 5 people caseybrown Ayest qfwills steff83 jo_davies
  • Bayesian mapping of genotype × expression interactions in quantitative and qualitative traits
    Heredity, Vol. aop, No. current.
    by F Hoti, MJ Sillanpää,
    posted to bayesian eqtl mapping methods by ccots on 2006-10-10 16:01:52 as * along with 2 people and 1 group Terkko giovanni GeschwindLab
  • Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
    Genes Dev., Vol. 20, No. 2. (15 January 2006), pp. 153-158.
    by Qun Pan, Arneet L Saltzman, Yoon K Kim, Christine Misquitta, Ofer Shai, Lynne E Maquat, Brendan J Frey, Benjamin J Blencowe
    posted to arrays eqtl regulation transcription by ccots on 2006-03-10 21:21:48 as **** along with 3 people bertelsen eoghanharr tabu
  • Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e53.
    by Anthony A Philippakis, Brian W Busser, Stephen S Gisselbrecht, Fangxue S He, Beatriz Estrada, Alan M Michelson, Martha L Bulyk
    posted to cis eqtl tfbs by ccots on 2006-05-26 18:50:53 as **
  • Association Studies: A genome-wide association approach to mapping the genetic determinants of the transcriptome in human populations
    European Journal of Human Genetics, Vol. aop, No. current.
    by Eric E Schadt,
    posted to eqtl expression mapping transcriptome by ccots on 2006-05-26 18:49:28 as **** along with 1 person and 1 group giovanni GeschwindLab
  • Identification of QTLs controlling gene expression networks defined a priori
    BMC Bioinformatics, Vol. 7 (16 June 2006), 308.
    by Daniel J Kliebenstein, Marilyn AL West, Hans van Leeuwen, Olivier Loudet, RW Doerge, Dina
    posted to arrays eqtl network by ccots on 2006-06-28 16:32:50 as **** along with 2 people natstreet caseybrown
  • Meta-analysis for microarray studies of the genetics of complex traits.
    Trends Biotechnol, Vol. 25, No. 2. (February 2007), pp. 45-47.
    by MF Miles, RW Williams
    posted to data data-integration eqtl expression metaanalysis mouse review by ccots on 2007-03-06 01:18:04 as ***
  • DNA variation and brain-region specific expression profiles show different relationships between inbred mouse strains: implications for eQTL mapping studies
    Genome Biology, Vol. 8 (26 February 2007), R25.
    by Iiris Hovatta, Matthew A Zapala, Ron S Broide, Eric E Schadt, Ondrej Libiger, Nicholas J Schork, David J Lockhart, Carrolee Barlow
    posted to brain eqtl expression mouse by ccots on 2007-03-06 01:13:01 as ***
  • The influence of genetic variation on gene expression
    Genome Res., Vol. 17, No. 12. (1 December 2007), pp. 1707-1716.
    by Rohan B Williams, Eva K Chan, Mark J Cowley, Peter F Little
    posted to eqtl by caseybrown on 2008-06-12 21:30:04 as read along with 6 people balicea giovanni ggorjan lp2 xingxu dmachugh
  • Gene expression quantitative trait locus analysis of 16000 barley genes reveals a complex pattern of genome-wide transcriptional regulation
    The Plant Journal, Vol. 53, No. 1. (January 2008), pp. 90-101.
    by Potokina, Elena, Druka, Arnis, Luo, Zewei, Wise, Roger, Waugh, Robbie, Kearsey, Mike
    posted to eqtl barley by caseybrown on 2008-07-25 23:04:09 as **
  • Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 225-232.
    by Leonid Bystrykh, Ellen Weersing, Bert Dontje, Sue Sutton, Mathew T Pletcher, Tim Wiltshire, Andrew I Su, Edo Vellenga, Jintao Wang, Kenneth F Manly, Lu Lu, Elissa J Chesler, Rudi Alberts, Ritsert C Jansen, Robert W Williams, Michael P Cooke, Gerald d de Haan
    posted to eqtl mouse by caseybrown on 2008-03-24 13:14:04 as read along with 4 people snuppepuppan kentsis fisherp hplatero
  • Summary of contributions to GAW15 Group 16: Processing/normalization of expression traits
    Genetic Epidemiology, Vol. 31, No. S1. (2007), pp. S132-S138.
    by Aurélie Labbe, Jeanette Mcclintick, Maria Martinez, On
    posted to method expression_array eqtl by caseybrown on 2008-07-25 23:01:44 as **
  • Rapid and robust association mapping of expression quantitative trait loci
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Alex Lam, Michael Schouten, Yurii Aulchenko, Chris Haley, Dirk J de Koning
    posted to eqtl by caseybrown on 2008-07-25 23:00:25 as **
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
    posted to eqtl by caseybrown on 2008-03-05 00:44:50 as read along with 5 people vplagnol nicholso jo_davies stoffreg meiklej
  • Harnessing naturally randomized transcription to infer regulatory relationships among genes
    Genome Biology, Vol. 8 (11 October 2007), R219.
    by Lin S Chen, Frank Emmert-Streib, John D Storey
    posted to cisreg eqtl expression_array network by caseybrown on 2008-03-18 22:10:59 as read
  • Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis
    BMC Bioinformatics, Vol. 9 (20 May 2008), 244.
    by Shameek Biswas, John D Storey, Joshua M Akey
    posted to method eqtl by caseybrown on 2008-05-27 15:02:38 as read
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to metabolism liver eqtl by caseybrown on 2008-05-27 16:23:37 as read along with 6 people Jonesy ptrobajo semrich ddunbar vplagnol Schmidtc
  • Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans
    PLoS Genetics, Vol. 2, No. 12. (1 December 2006), e222.
    by Yang Li, Olga A Álvarez, Evert W Gutteling, Marcel Tijsterman, Jingyuan Fu, Joost A Riksen, Esther Hazendonk, Pjotr Prins, Ronald H Plasterk, Ritsert C Jansen, Rainer Breitling, Jan E Kammenga
    posted to cisreg eqtl expression_array genetics worm by caseybrown on 2008-02-19 16:39:04 as read
  • Genetic regulation of gene expression during shoot development in Arabidopsis.
    Genetics, Vol. 172, No. 2. (February 2006), pp. 1155-1164.
    by R DeCook, S Lall, D Nettleton, SH Howell
    posted to arabidopsis cisreg eqtl by caseybrown on 2008-03-18 16:13:19 as ** along with 1 person fisherp
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to cisreg eqtl network by caseybrown on 2008-03-18 16:09:40 as read along with 2 people and 1 group raiyar natstreet steinmetzlab
  • A method dealing with a large number of correlated traits in a linkage genome scan
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Tao Feng, Shuanglin Zhang, Qiuying Sha
    posted to multivariate eqtl by caseybrown on 2008-07-25 22:54:33 as **
  • Linkage analysis using principal components of gene expression data
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Elizabeth Atkinson, Brooke Fridley, Ellen Goode, Shannon Mcdonnell, Wen L Mares, Kari Rabe, Zhifu Sun, Susan Slager, Mariza de Andrade
    posted to multivariate eqtl by caseybrown on 2008-07-25 22:53:31 as **
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