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Tag epigenome [34 articles]

Recent papers classified by the tag epigenome.
  • Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma: defining the pancreatic pancer epigenome.
    Cancer biology & therapy, Vol. 7, No. 7. (July 2008), pp. 1157-1159.
    by P Corn
    posted to pancreas epigenome cancer-crosstalk cancer adenocarcinoma by Zephyrus on 2008-11-24 02:17:43 as ** along with 1 group Roswell Cancer Crosstalk
  • Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.
    Cell, Vol. 130, No. 5. (7 September 2007), pp. 851-862.
    by O Mathieu, J Reinders, M Caikovski, C Smathajitt, J Paszkowski
    posted to assymetrical cg cytosine epigenome methylation stability by slonik on 2008-04-04 04:59:08 as ***** along with 1 person saru
  • Controlling elements are wild cards in the epigenomic deck.
    Proc Natl Acad Sci U S A (19 November 2007)
    by Jennifer E E Cropley, David I K I Martin
    posted to epigenetics epigenome regulator by sebastien_vigneau on 2007-11-22 09:16:03 as *** along with 2 people balicea dchughes
  • SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
    BMC Bioinformatics, Vol. 9 (07 October 2008), 422.
    by Raj Chari, Bradley P Coe, Craig Wedseltoft, Marie Benetti, Ian M Wilson, Emily A Vucic, Calum Macaulay, Raymond T Ng, Wan L Lam
    posted to transcriptome software integrate epigenome data-integration cancer by pengchy on 2008-10-20 02:16:45 as ** along with 2 people mitko operon
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to chromatin epigenetics epigenome histone stem by epigenetics on 2007-08-03 18:16:58 as read along with 14 people and 1 group gdb jyuh brant dchughes vega kengg vplagnol olympos bioyang cabbagezs rschulz slevy03 jasonflannick inesdesantiago EisenLab
  • Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
    Genome Res. (29 January 2008), gr.6880908.
    by Alvaro Rada-Iglesias, Adam Ameur, Philipp Kapranov, Stefan Enroth, Jan Komorowski, Thomas R Gingeras, Claes Wadelius
    posted to chromatin disease epigenetics epigenome histone by epigenetics on 2008-02-07 15:20:39 as ***** along with 2 people Eroslavochka davfre
  • Identification of higher-order functional domains in the human ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 917-927.
    by Robert E Thurman, Nathan Day, William S Noble, John A Stamatoyannopoulos
    posted to bioinformatics epigenetics epigenome by epigenetics on 2007-06-14 16:33:02 as ***** along with 2 people and 1 group ghattem jasonflannick Bioinformatics
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
    posted to epigenetics epigenome methylation plant by epigenetics on 2008-02-20 08:46:59 as ** along with 4 people djkt ghattem mdimon slonik
  • The emerging science of epigenomics.
    Hum Mol Genet, Vol. 15 Spec No 1 (15 April 2006)
    by PA Callinan, AP Feinberg
    posted to bioinformatics epigenetics epigenome methods methylome by epigenetics on 2007-07-03 10:26:26 as **** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
    Science, Vol. 316, No. 5831. (15 June 2007), pp. 1586-1591.
    by Christopher D Smith, Shengqiang Shu, Christopher J Mungall, Gary H Karpen
    posted to chromatin epigenetics epigenome histone by epigenetics on 2007-06-16 16:05:59 as ***** along with 2 people djkt cabbagezs
  • Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes.
    Proc Natl Acad Sci U S A (27 November 2007)
    by Dag H H Yasui, Sailaja Peddada, Mark C C Bieda, Roxanne O O Vallero, Amber Hogart, Raman P P Nagarajan, Karen N N Thatcher, Peggy J J Farnham, Janine M M Lasalle
    posted to epigenetics epigenome methylation by epigenetics on 2007-12-06 19:14:00 as ***** along with 1 person sebastien_vigneau
  • Global Assessment of Combinatorial Post-translational Modification of Core Histones in Yeast Using Contemporary Mass Spectrometry: LYS4 TRIMETHYLATION CORRELATES WITH DEGREE OF ACETYLATION ON THE SAME H3 TAIL
    J. Biol. Chem., Vol. 282, No. 38. (21 September 2007), pp. 27923-27934.
    by Lihua Jiang, Jonell N Smith, Shannon L Anderson, Ping Ma, Craig A Mizzen, Neil L Kelleher
    posted to chromatin epigenetics epigenome histone methods by epigenetics on 2007-09-19 11:19:40 as *****
  • Genome-wide H3K9 histone acetylation profiles are altered in benzopyrene treated MCF7 breast cancer cells
    J. Biol. Chem. (7 December 2007), M707506200.
    by Bekim Sadikovic, Joseph Andrews, David Carter, John Robinson, David I Rodenhiser
    posted to cancer chromatin epigenetics epigenome hdacs histone toxicology by epigenetics on 2007-12-22 15:52:27 as ***** along with 2 people Eroslavochka vega
  • DNA Methylation Analysis by MethyLight Technology
    Methods, Vol. 25, No. 4. (December 2001), pp. 456-462.
    by Binh N Trinh, Tiffany I Long, Peter W Laird
    posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:29:08 as read
  • Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method
    Nat Genet, Vol. 6, No. 1. (January 1994), pp. 33-40.
    by Y Hayashizaki, H Shibata, S Hirotsune, H Sugino, Y Okazaki, N Sasaki, K Hirose, H Imoto, H Okuizumi, M Muramatsu, H Komatsubara, T Shiroishi, K Moriwaki, M Katsuki, N Hatano, H Sasaki, T Ueda, N Mise, N Takagi, C Plass, VM Chapman
    posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:35:54 as ****
  • Toward a human epigenome
    Nature Genetics, Vol. 38, No. 12., pp. 1359-1360.
    by Romulo M Brena, Tim HM Huang, Christoph Plass
    posted to epigenetics epigenome by epigenetics on 2007-09-19 16:25:22 as *****
  • Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5868-5877.
    by Alexander Meissner, Andreas Gnirke, George W Bell, Bernard Ramsahoye, Eric S Lander, Rudolf Jaenisch
    posted to epigenetics epigenome methods methylation by epigenetics on 2008-08-21 13:36:30 as *****
  • High-Resolution Mapping and Characterization of Open Chromatin across the Genome.
    Cell, Vol. 132, No. 2. (25 January 2008), pp. 311-322.
    by AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, TS Furey, GE Crawford
    posted to chromatin epigenetics epigenome histone pyrosequencing by epigenetics on 2008-02-21 10:15:07 as ***** along with 5 people and 1 group Stew Eroslavochka djkt bootsy aprasad Bioinformatics - CRUK
  • The landscape of histone modifications across 1% of the human genome in five human cell lines
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 691-707.
    by Christoph M Koch, Robert M Andrews, Paul Flicek, Shane C Dillon, Ulas Karaoz, Gayle K Clelland, Sarah Wilcox, David M Beare, Joanna C Fowler, Phillippe Couttet, Keith D James, Gregory C Lefebvre, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Pawandeep Dhami, Cordelia F Langford, Zhiping Weng, Ewan Birney, Nigel P Carter, David Vetrie, Ian Dunham
    posted to epigenetics epigenome histone by epigenetics on 2007-06-14 16:31:25 as ***** along with 7 people and 1 group jyuh djkt olympos ghattem maximilianh xingxu jasonflannick Bioinformatics
  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
    posted to bioinformatics epigenetics epigenome by epigenetics on 2007-06-14 16:33:43 as **** along with 7 people and 4 groups ana Borelli kengg ghattem blobbybirdman inesdesantiago jasonflannick structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
  • Epigenome scans and cancer genome sequencing converge on WNK2, a kinase-independent suppressor of cell growth
    PNAS (19 June 2007), 0700683104.
    by Chibo Hong, Scott K Moorefield, Peter Jun, Kenneth D Aldape, Samir Kharbanda, Heidi S Phillips, Joseph F Costello
    posted to cancer epigenetics epigenome by epigenetics on 2007-06-20 22:18:20 as *****
  • Genome-scale identification of nucleosome positions in S. cerevisiae.
    Science, Vol. 309, No. 5734. (22 July 2005), pp. 626-630.
    by GC Yuan, YJ Liu, MF Dion, MD Slack, LF Wu, SJ Altschuler, OJ Rando
    posted to chromatin epigenetics epigenome histone by epigenetics on 2007-07-25 16:45:28 as ***** along with 5 people aalibes koller olympos redfish99213 elzodw
  • A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies.
    PLoS Med, Vol. 3, No. 12. (December 2006)
    by DS Shames, L Girard, B Gao, M Sato, CM Lewis, N Shivapurkar, A Jiang, CM Perou, YH Kim, JR Pollack, KM Fong, CL Lam, M Wong, Y Shyr, R Nanda, OI Olopade, W Gerald, DM Euhus, JW Shay, AF Gazdar, JD Minna
    posted to cancer epigenetics epigenome methylation by epigenetics on 2007-07-02 13:57:09 as **** along with 2 people jfr blackm0k
  • Genome-wide analysis of DNA methylation patterns
    Development (10 October 2007), dev.001131.
    by Daniel Zilberman, Steven Henikoff
    posted to epigenetics epigenome methods methylation reviews by epigenetics on 2007-11-02 14:54:38 as ***** along with 4 people shikin dchughes sebastien_vigneau jyuh
  • DNA methylation analysis by pyrosequencing.
    Nat Protoc, Vol. 2, No. 9. (2007), pp. 2265-2275.
    by J Tost, IG Gut
    posted to epigenetics epigenome methods methylation pyrosequencing by epigenetics on 2007-11-12 13:53:32 as *****
  • An analytical pipeline for genomic representations used for cytosine methylation studies
    Bioinformatics (18 March 2008), btn096.
    by Reid F Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A Richmond, Quan Chen, Xin Zheng, Kami Kim, John M Greally
    posted to bioinformatics epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:56:08 as ***** along with 1 person renatomilani
  • Genomic biology: The epigenomic era opens
    Nature, Vol. 448, No. 7153. (01 August 2007), pp. 548-549.
    by Stephen B Baylin, Kornel E Schuebel
    posted to epigenome by epigenetics on 2007-08-27 11:58:40 as read along with 3 people and 1 group jyuh dchughes saru Bioinformatics
  • DNA methylation profiling of human chromosomes 6, 20 and 22.
    Nat Genet (29 October 2006)
    by Florian Eckhardt, Joern Lewin, Rene Cortese, Vardhman K K Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V Cox, Rob Davies, Thomas A A Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck
    posted to bioinformatics epigenetics epigenome methods methylation methylome by epigenetics on 2007-09-19 16:17:53 as ***** along with 3 people plofje shigepong jo_davies
  • Epigenetic regulation and the variability of gene expression.
    Nat Genet, Vol. 40, No. 2. (February 2008), pp. 141-147.
    by JK Choi, YJ Kim
    posted to chromatin epigenetics epigenome evolution histone inheritance yeast by epigenetics on 2008-01-31 09:09:28 as ***** along with 3 people bootsy rschulz maralena
  • High-Resolution Profiling of Histone Methylations in the Human Genome
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao
    posted to epigenetics epigenome histone methylation by epigenetics on 2007-06-21 22:22:47 as read along with 2 people polivares zwang
  • Cytosine methylation profiling of cancer cell lines
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4844-4849.
    by Mathias Ehrich, Julia Turner, Peter Gibbs, Lara Lipton, Mara Giovanneti, Charles Cantor, Dirk van den Boom
    posted to cancer epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:50:29 as *****
  • An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data
    Bioinformatics (29 July 2008), btn402.
    by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung
    posted to bioinformatics chromatin epigenetics epigenome histone by epigenetics on 2008-08-01 13:46:06 as ***** along with 3 people polivares caseybrown djkt
  • High-resolution genome-wide mapping of histone modifications.
    Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1013-1016.
    by TY Roh, WC Ngau, K Cui, D Landsman, K Zhao
    posted to chromatin epigenetics epigenome histone by epigenetics on 2007-09-07 01:14:57 as *****
  • Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
    Science, Vol. 316, No. 5831. (15 June 2007), pp. 1625-1628.
    by Roger A Hoskins, Joseph W Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H Karpen, Susan E Celniker
    posted to chromatin epigenetics epigenome histone by epigenetics on 2007-06-16 16:07:14 as **** along with 1 person cabbagezs
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