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Tag element [53 articles]

Recent papers classified by the tag element.
  • Characterization of conserved sequence elements in eukaryotic RNase P RNA reveals roles in holoenzyme assembly and tRNA processing.
    RNA, Vol. 11, No. 6. (June 2005), pp. 885-896.
    by S Xiao, JJ Day-Storms, C Srisawat, CA Fierke, DR Engelke
    posted to element eukaryota rna rnasep sequence by zwang on 2007-07-26 11:40:48 as ****
  • Experimental Characterization of Cis-Acting Elements Important for Translation and Transcription in Halophilic Archaea
    PLoS Genetics, Vol. 3, No. 12. (1 December 2007), e229.
    by Mariam Brenneis, Oliver Hering, Christian Lange, Jörg Soppa
    posted to archaea element experiment transcription translation by zwang on 2008-01-02 10:45:35 as **
  • A Conserved Element in the Yeast RNase MRP RNA Subunit can Participate in a Long-range Base-pairing Interaction
    Journal of Molecular Biology, Vol. 341, No. 2. (6 August 2004), pp. 375-388.
    by Scott C Walker, Johanna M Avis
    posted to element interaction rna rnasep subunit yeast by zwang on 2007-07-26 19:21:56 as ****
  • Transcriptional responses to polypeptide ligands: the JAK-STAT pathway.
    Annu Rev Biochem, Vol. 64 (1995), pp. 621-651.
    by C Schindler, JE Darnell
    posted to element pap response stat by Trillian on 2007-04-12 11:58:00 as **
  • A moving grid finite element method applied to a model biological pattern generator
    Journal of Computational Physics, Vol. 190, No. 2. (20 September 2003), pp. 478-500.
    by Anotida Madzvamuse, Andrew J Wathen, Philip K Maini
    posted to element finite grid pattern by sstoma on 2007-08-03 13:27:26 as ** along with 1 group VirtualPlants
  • Numerical Modeling of Optical Gradient Traps Using the Vector Finite Element Method
    Journal of Computational Physics, Vol. 159 (March 2000), pp. 13-37.
    by DA White
    posted to element gradient model numerical optical trap tweezers vector by rodney on 2008-02-06 01:23:18 as **
  • Vector finite element modeling of optical tweezers
    Computer Physics Communications, Vol. 128, No. 3. (June 2000), pp. 558-564.
    by Daniel A White
    posted to element model numerical optical simulation theory tweezers vector by rodney on 2008-02-06 01:21:32 as **
  • Quantum walk algorithm for element distinctness
    (19 Oct 2005)
    by Andris Ambainis
    posted to algorithm computing distinctness element quantum by nilton on 2006-11-08 00:49:15 as ** along with 2 people damaru ghosthunt268
  • Optimization of the Perfectly Matched Layer for the Finite-Element Time-Domain Method
    Microwave and Wireless Components Letters, IEEE, Vol. 17, No. 1. (2007), pp. 10-12.
    by M Movahhedi, A Abdipour, H Ceric, A Sheikholeslami, S Selberherr
    posted to time-domain pml perfectly method maxwells matched layer finite- fetd equations element conditions boundary absorbing abc by Movahhedi on 2007-01-15 07:47:38 as *****
  • Grid and Particle Hydrodynamics: Beyond Hydrodynamics via Fluid Element Particle-in-Cell
    Journal of Computational Physics (August 1998), pp. 358-378.
    by WB Bateson, DW Hewett
    posted to element fluid hydrodynamic particle-in-cell simulation by michaelbussmann on 2008-06-03 15:07:31 as **
  • Post-modern Electromagnetics: Using Intelligent MaXwell Solvers
    (23 March 1999)
    by Christian Hafner
    posted to difference electrodynamic electrostatic element finite grid magnetostatic maxwell multipole simulation solver time-domain by michaelbussmann on 2008-02-28 15:22:47 as read
  • A spectral element method for fluid dynamics: Laminar flow in a channel expansion
    Journal of Computational Physics, Vol. 54, No. 3. (June 1984), pp. 468-488.
    by A Patera
    posted to spectral method laminar fluid flow expansion element dynamics channel algorithm accuracy by michaelbussmann on 2008-10-29 17:35:11 as ****
  • An Adaptive Grid Scheme Using the Boundary Element Method
    Journal of Computational Physics, Vol. 127, No. 2. (September 1996), pp. 452-463.
    by Ramakanth Munipalli, Dale A Anderson
    posted to adaptive algorithm boundary element grid mesh poisson by michaelbussmann on 2008-06-06 13:25:54 as ****
  • A mixed finite element formulation for Maxwell's equations in the time domain
    Journal of Computational Physics, Vol. 85, No. 2. (December 1989), pp. 503-503.
    by Robert L Lee, Niel K Madsen
    posted to domain element equation fem finite maxwell solver time by michaelbussmann on 2008-06-04 17:28:05 as ***
  • The fast multipole boundary element method for potential problems: A tutorial
    Engineering Analysis with Boundary Elements, Vol. 30, No. 5. (May 2006), pp. 371-381.
    by YJ Liu, N Nishimura
    posted to algorithm bem boundary element fast method multipole by michaelbussmann on 2008-08-21 16:51:35 as **
  • Development of a 3D finite element particle-in-cell code with adaptive meshing
    Plasma Science, 2004. ICOPS 2004. IEEE Conference Record - Abstracts. The 31st IEEE International Conference on (2004), 335.
    by T Bui, L Ives, J Verbonceur, C Birdsall
    posted to 3d adaptive algorithm element fem finite grid mesh particle-in-cell pic simulation by michaelbussmann on 2008-06-10 10:20:47 as ****
  • Code Development of a 3D Finite Element Particle-In-Cell Code with Adaptive Meshing
    Plasma Science, 2005. ICOPS '05. IEEE Conference Record - Abstracts. IEEE International Conference on (2005), pp. 269-269.
    by Thuc Bui, L Ives, J Verbonceur, C Birdsall
    posted to 3d adaptive algorithm element finite grid mesh particle-in-cell simulation by michaelbussmann on 2008-06-10 14:58:59 as *
  • On the determination of radial matrix elements for high-n transitions in hydrogenic atoms and ions
    Journal of Physics B: Atomic, Molecular and Optical Physics, Vol. 39, No. 12. (28 June 2006), pp. 2641-2664.
    by Hey,
    posted to element matrix radial rydberg by martinthesis on 2007-12-19 17:39:38 as **
  • A three-dimensional finite element model of an adherent eukaryotic cell.
    Eur Cell Mater, Vol. 7 (16 April 2004)
    by JG McGarry, PJ Prendergast
    posted to cell element fem finite model by joshfly on 2006-10-25 22:36:39 as read
  • A comparison of strain and fluid shear stress in stimulating bone cell responses--a computational and experimental study.
    FASEB J, Vol. 19, No. 3. (March 2005), pp. 482-484.
    by JG McGarry, J Klein-Nulend, MG Mullender, PJ Prendergast
    posted to element fem finite model no pge2 shear strain by joshfly on 2006-10-25 22:36:06 as read
  • Finite-Element Stress Analysis of a Multicomponent Model of Sheared and Focally-Adhered Endothelial Cells
    Annals of Biomedical Engineering, Vol. 35, No. 2. (February 2007), pp. 208-223.
    by Ferko, Michael, Bhatnagar, Amit, Garcia, Mariana, Butler, Peter
    posted to cell element fem finite by joshfly on 2007-03-01 23:47:58 as **
  • Large deformation finite element analysis of micropipette aspiration to determine the mechanical properties of the chondrocyte.
    Ann Biomed Eng, Vol. 33, No. 4. (April 2005), pp. 494-501.
    by FP Baaijens, WR Trickey, TA Laursen, F Guilak
    posted to cell element fem finite by joshfly on 2007-03-01 23:52:03 as **
  • Combination of finite element modeling and optimization for the study of lumbar spine biomechanics considering the 3D thorax-pelvis orientation
    Medical Engineering & Physics, Vol. 26, No. 1. (January 2004), pp. 11-22.
    by Francisco Ezquerro, Antonio Simon, Maria Prado, Ana Perez
    posted to element finite modelisation spine by jcofthewood on 2006-11-21 16:41:31 as **
  • Pharmacological levels of copper exert toxic effects in Caco-2 cells
    Biological Trace Element Research, Vol. 96, No. 1. (1 December 2003), pp. 143-152.
    by Bettina Zödl, Michaela Zeiner, Wolfgang Marktl, Ilse Steffan, Cem Ekmekcioglu
    posted to toxicity stress oxidative intestine element copper confluence caco-2trace by HEIRS on 2008-10-17 18:36:48 as *** along with 7 groups HEIRS Nutrition HEIRS Inflammatory Bowel Disease, Colititis, and IBS HEIRS Fibromyalgia HEIRS - Environmental Illness Research HEIRS Environmental Health and Hazards HEIRS Environmental Ecology and related health hazards HEIRS Emergency Preparedness and Response
  • Plant transposable elements, with an emphasis on grass species
    Euphytica, Vol. 139, No. 3. (February 2004), pp. 227-247.
    by Francois Sabot, Delphine Simon, Michel Bernard
    posted to element genetics genomics grass plant transposable transposon by bsmagic to the group Bioinformatics on 2006-07-28 05:12:30 as ** along with 1 group bioinplant
  • A hexanucleotide element directs microRNA nuclear import.
    Science, Vol. 315, No. 5808. (5 January 2007), pp. 97-100.
    by HW Hwang, EA Wentzel, JT Mendell
    posted to element import mirna nuclear by andersbj to the group microRNA on 2007-01-06 17:15:39 as **** along with 4 people and 1 group GustavoLacerda heliopais cdawson stajich GIG
  • A Synthetic Maternal-Effect Selfish Genetic Element Drives Population Replacement in Drosophila.
    Science (29 March 2007)
    by Chun-Hong H Chen, Haixia Huang, Catherine M M Ward, Jessica T T Su, Lorian V V Schaeffer, Ming Guo, Bruce A A Hay
    posted to selfish mirna element drosophila by andersbj to the group microRNA on 2007-05-17 14:13:32 as **** along with 2 people and 1 group cmmorel brant EisenLab
  • On improving the GA step-wise shape optimization method through the application of the Fixed Grid FEA paradigm
    Struct. Mutltidiscip. Opt., Vol. 25, No. 4. (2003), pp. 270-278.
    by SY Woon, OM Querin, GP Steven
    posted to shape optimization grid genetic fix finite element algorithm by dilbert to the group SORG on 2007-08-15 11:02:49 as **
  • Displacement and equilibrium models in the finite element method by B. Fraeijs de Veubeke, Chapter 9, Pages 145-197 of <I>Stress Analysis</I>, Edited by O. C. Zienkiewicz and G. S. Holister, Published by John Wiley & Sons, 1965
    International Journal for Numerical Methods in Engineering, Vol. 52, No. 3. (2001), pp. 287-342.
    by OC Zienkiewicz
    posted to veubeke lst fem element by dilbert to the group SORG on 2007-06-05 13:18:47 as **
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to element human ultraconserved by fpattyn on 2008-02-28 13:25:48 as ** along with 16 people and 5 groups treangen Ema carlfulp karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray djkt sujaikumar blobbybirdman cisevol structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.
    BMC Genomics, Vol. 5, No. 1. (2004)
    by A Sandelin, P Bailey, S Bruce, PG Engström, JM Klos, WW Wasserman, J Ericson, B Lenhard
    posted to algorithm element non-coding ultraconserved by fpattyn on 2008-02-28 13:58:52 as ** along with 1 person sujaikumar
  • Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants
    Nature Genetics, Vol. 38, No. 10. (24 September 2006), pp. 1216-1220.
    by Adnan Derti, Frederick P Roth, George M Church, C-Ting Wu
    posted to copy duplication element human number segmental ultraconserved variant by fpattyn on 2008-02-28 14:04:57 as ** along with 2 people gjuggler bpcusack
  • Multiple Organism Algorithm for Finding Ultraconserved Elements
    BMC Bioinformatics, Vol. 9 (11 January 2008), 15.
    by Scott Christley, Neil F Lobo, Greg Madey
    posted to algorithm element ultraconserved by fpattyn on 2008-02-28 13:23:58 as ** along with 2 people and 1 group cisevol yoanjacquemin cis-regulatory-evolution
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to element human ultraconserved by fpattyn on 2008-02-28 13:20:08 as ** along with 9 people and 1 group aprasad balicea djkt lp2 cabbagezs cisevol Minty gjuggler bpcusack cis-regulatory-evolution
  • Thermal cycling simulation in electronic packages using molecular dynamic method
    Thermal, Mechanical and Multi-Physics Simulation and Experiments in Micro-Electronics and Micro-Systems, 2005. EuroSimE 2005. Proceedings of the 6th International Conference on (2005), pp. 36-40.
    by HB Fan, Edward, KL Chan, CKY Wong, MMF Yuen
    posted to thermal md finite element cycling by edwardc on 2008-10-21 07:30:02 as **
  • A multi-scale method to investigate delamination in electronic packages
    Journal of Adhesion Science and Technology, Vol. 20, No. 10. (2006), pp. 1061-1078.
    by Fan, Hai Bo, Wong, KY Cell, Yuen, MF Matthew
    posted to finite element delamination by edwardc on 2008-10-21 07:42:00 as **
  • A new method to predict delamination in electronic packages
    Electronic Components and Technology Conference, 2005. Proceedings. 55th (2005), pp. 145-150 Vol. 1.
    by HB Fan, CKY Wong, MMF Yuen
    posted to finite element delamination by edwardc on 2008-10-21 07:43:36 as **
  • Energy based failure criterion for interfacial delamination [IC packaging]
    Electronic Materials and Packaging, 2000. (EMAP 2000). International Symposium on (2000), pp. 201-205.
    by PWK Chung, SK Chan, MMF Yuen, DCC Lam, A Teng
    posted to interface finite element delamination by edwardc on 2008-10-21 07:16:33 as ** along with 1 person DavidLAM
  • Settlement behaviour of a concrete faced rock-fill dam
    Geotechnical and Geological Engineering, Vol. 24, No. 6. (December 2006), pp. 1665-1678.
    by Ozkuzukiran, , Ozkan, , Ozyazicioglu, , Yildiz,
    posted to dam element finite instrumented method rock-fill settlement by cemakguner on 2007-01-04 00:51:58 as **
  • Trade-offs in detecting evolutionarily constrained sequence by comparative genomics.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 143-164.
    by EA Stone, GM Cooper, A Sidow
    posted to comparative_genomics element functional mcs by aprasad on 2005-11-01 21:27:37 as ** along with 3 people diamantis jwortman eckart_bindewald
  • Discovery of regulatory elements in vertebrates through comparative genomics
    Nature Biotechnology, Vol. 23, No. 10. (06 October 2005), pp. 1249-1256.
    by Amol Prakash, Martin Tompa
    posted to comparative_genomics element regulatory by aprasad on 2005-11-01 21:21:01 as ** along with 2 people and 3 groups indigoviolet dchughes EisenLab G4ID Genetics-of-Gambling
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to element motif regulatory by aprasad on 2005-10-24 16:46:29 as ** along with 27 people and 6 groups cambray emptyhb bryankr icases ana barry aalibes jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Detection of potential GDF6 regulatory elements by multispecies sequence comparisons and identification of a skeletal joint enhancer.
    Genomics (23 June 2005)
    by Matthew E E Portnoy, Kelly J J McDermott, Anthony Antonellis, Elliott H H Margulies, Arjun B B Prasad, , David M M Kingsley, Eric D D Green, Douglas P P Mortlock
    posted to comparative_genomics element enhancer exactplus gdf6 joint mcs regulatory by aprasad on 2005-08-08 22:06:43 as read along with 1 person and 2 groups breden FAB-lab SFUAntibodyResearch
  • A survey of motif discovery methods in an integrated framework
    Biology Direct, Vol. 1, No. 1. (06 April 2006), 11.
    by Geir K Sandve, Finn Drabløs
    posted to cns element regulatory signature by aprasad on 2007-04-17 15:38:47 as ** along with 7 people and 1 group AbnerCYH dpollard samal yevishere csdhwang idonaldson yoonk EisenLab
  • Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.
    Hum Mol Genet, Vol. 14, No. 20. (15 October 2005), pp. 3057-3063.
    by N Ahituv, S Prabhakar, F Poulin, EM Rubin, O Couronne
    posted to cns comparative_genomics element functional regulatory signal by aprasad on 2006-02-13 20:16:12 as ** along with 1 person maximilianh
  • Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity.
    Science (23 March 2006)
    by Shannon Fisher, Elizabeth A A Grice, Ryan M M Vinton, Seneca L L Bessling, Andrew S S McCallion
    posted to cns element enhancer jc regulatory by aprasad on 2006-04-01 00:24:28 as ** along with 5 people and 3 groups adepace nickluscombe maximilianh cisevol emptyhb EisenLab EBI-regulation cis-regulatory-evolution
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to element microrna regulatory by aprasad on 2006-02-13 20:58:12 as ** along with 14 people and 4 groups jerlich mfenner dayjm marcius eckart_bindewald dpollard mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz jfr caseybrown EisenLab microRNA BioinfoCIPF SGU-CIPF
  • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150.
    by X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
    posted to element functional mcs methods motif regulatory by aprasad on 2007-06-15 15:29:40 as ** along with 4 people xwbcn olympos rschulz bpcusack
  • Exploring transcription factor binding properties of several non-coding DNA sequence elements in the human NF-IL6 gene.
    J Mol Biol, Vol. 357, No. 3. (31 March 2006), pp. 732-747.
    by EI Pares-Matos, JS Milligan, M Bina
    posted to element enhancer regulatory sequence by aprasad on 2006-04-28 15:32:10 as **
  • Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of Waardenburg-Shah (WS4) syndrome.
    Hum Mol Genet, Vol. 15, No. 2. (15 January 2006), pp. 259-271.
    by A Antonellis, WR Bennett, TR Menheniott, AB Prasad, SQ Lee-Lin, ED Green, D Paisley, RN Kelsh, WJ Pavan, A Ward
    posted to cns comparative_genomics element enhancer exactplus functional regulatory signature by aprasad on 2006-02-13 21:06:27 as **
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