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Tag dupvshgt [40 articles]

Recent papers classified by the tag dupvshgt.
  • The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.
    Proc Natl Acad Sci U S A, Vol. 104, No. 19. (8 May 2007), pp. 7981-7986.
    by NH Cho, HR Kim, JH Lee, SY Kim, J Kim, S Cha, SY Kim, AC Darby, HH Fuxelius, J Yin, JH Kim, J Kim, SJ Lee, YS Koh, WJ Jang, KH Park, SG Andersson, MS Choi, IS Kim
    posted to dupvshgt by treangen on 2007-07-09 13:20:43 as *** along with 2 people operon bjorns
  • The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e143.
    by Eric Alm, Katherine Huang, Adam Arkin
    posted to dupvshgt by treangen on 2007-07-09 13:20:25 as *** along with 1 person Retchless
  • GENOMICS: Gene Duplication and Evolution
    Science, Vol. 297, No. 5583. (9 August 2002), pp. 945-947.
    by Michael Lynch
    posted to dupvshgt by treangen on 2007-07-09 13:19:30 as *** along with 1 person BioNica
  • Multiple pathways of selected gene amplification during adaptive mutation
    PNAS, Vol. 103, No. 46. (14 November 2006), pp. 17319-17324.
    by Elisabeth Kugelberg, Eric Kofoid, Andrew B Reams, Dan I Andersson, John R Roth
    posted to dupvshgt by treangen on 2007-07-09 13:19:12 as *** along with 2 people and 1 group bjorns cmm FAB-lab
  • Comparative genomics and the evolution of prokaryotes
    Trends in Microbiology, Vol. 15, No. 3. (March 2007), pp. 135-141.
    by Sophie Abby, Vincent Daubin
    posted to dupvshgt by treangen on 2007-07-09 15:45:14 as ***
  • On the Nature of Gene Innovation: Duplication Patterns in Microbial Genomes
    Mol Biol Evol, Vol. 20, No. 6. (1 June 2003), pp. 945-954.
    by Sean D Hooper, Otto G Berg
    posted to dupvshgt by treangen on 2007-07-11 01:28:25 as ***
  • Increased Genome Instability in Escherichia coli lon Mutants: Relation to Emergence of Multiple-Antibiotic-Resistant (Mar) Mutants Caused by Insertion Sequence Elements and Large Tandem Genomic Amplifications
    Antimicrob. Agents Chemother., Vol. 51, No. 4. (1 April 2007), pp. 1293-1303.
    by Herve Nicoloff, Vincent Perreten, Stuart B Levy
    posted to dupvshgt by treangen on 2007-07-09 13:18:54 as ***
  • Evolutionary tinkering with transposable elements
    PNAS, Vol. 103, No. 21. (23 May 2006), pp. 7941-7942.
    by King I Jordan
    posted to dupvshgt by treangen on 2007-07-09 13:26:46 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The genome sequence of Rickettsia prowazekii and the origin of mitochondria.
    Nature, Vol. 396, No. 6707. (12 November 1998), pp. 133-140.
    by SG Andersson, A Zomorodipour, JO Andersson, T Sicheritz-Pontén, UC Alsmark, RM Podowski, AK Näslund, AS Eriksson, HH Winkler, CG Kurland
    posted to dupvshgt by treangen on 2007-07-09 13:18:31 as *** along with 1 person knaseanka
  • The role of laterally transferred genes in adaptive evolution
    BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007)
    by Pradeep Marri, Weilong Hao, Brian G Golding
    posted to dupvshgt by treangen on 2007-07-09 18:28:30 as ***
  • Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms.
    J Exp Zoolog B Mol Dev Evol (12 July 2006)
    by Christian Roth, Shruti Rastogi, Lars Arvestad, Katharina Dittmar, Sara Light, Diana Ekman, David A A Liberles
    posted to dupvshgt by treangen on 2007-07-11 01:27:17 as *** along with 6 people smbe2008 zhlei operon bjorns signalduplication LouisKa
  • Where Do All Those Genes Come From?
    PLoS Biology, Vol. 3, No. 5. (1 May 2005), e169.
    posted to dupvshgt by treangen on 2007-07-09 13:17:10 as ***
  • Erosion of interaction networks in reduced and degraded genomes
    Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, Vol. 308B, No. 1. (2007), pp. 97-103.
    by Howard Ochman, Renyi Liu, Eduardo PC Rocha
    posted to dupvshgt by treangen on 2007-07-09 15:40:25 as ***
  • Microbial genomes opened up.
    Nature, Vol. 392, No. 6674. (26 March 1998), pp. 339-342.
    by RF Doolittle
    posted to dupvshgt by treangen on 2007-07-09 13:30:55 as ***
  • Analysing gene function after duplication
    BioEssays, Vol. 23, No. 10. (2001), pp. 873-876.
    by T Massingham, LJ Davies, P Liò
    posted to dupvshgt by treangen on 2007-07-09 13:24:58 as ***
  • Evolutionary Origins of Genomic Repertoires in Bacteria.
    PLoS Biol, Vol. 3, No. 5. (5 April 2005)
    by Emmanuelle Lerat, Vincent Daubin, Howard Ochman, Nancy A A Moran
    posted to dupvshgt by treangen on 2007-07-09 13:16:54 as *** along with 5 people and 1 group operon jwortman tny manzanita kinestetika microbiology_nijmegen
  • Examining bacterial species under the specter of gene transfer and exchange.
    Proc Natl Acad Sci U S A, Vol. 102 Suppl 1 (3 May 2005), pp. 6595-6599.
    by H Ochman, E Lerat, V Daubin
    posted to dupvshgt by treangen on 2007-07-09 13:16:37 as *** along with 5 people jmeppley balajis AaronDarling manzanita kinestetika
  • Gene Duplication: The Genomic Trade in Spare Parts
    PLoS Biology, Vol. 2, No. 7. (1 July 2004), e206.
    by Matthew Hurles
    posted to dupvshgt by treangen on 2007-07-09 21:32:04 as *** along with 1 person timflutre
  • Duplicated genes evolve slower than singletons despite the initial rate increase.
    BMC Evol Biol, Vol. 4 (6 July 2004)
    by IK Jordan, YI Wolf, EV Koonin
    posted to dupvshgt by treangen on 2007-07-09 13:24:16 as *** along with 1 person bluto
  • Recognizing the pseudogenes in bacterial genomes
    Nucleic Acids Research, Vol. 33, No. 10. (2005), pp. 3125-3132.
    by Emmanuelle Lerat, Howard Ochman
    posted to dupvshgt by treangen on 2007-07-09 13:15:57 as ***
  • Gene gain and gene loss in streptococcus: is it driven by habitat?
    Mol Biol Evol, Vol. 23, No. 12. (December 2006), pp. 2379-2391.
    by PR Marri, W Hao, GB Golding
    posted to dupvshgt by treangen on 2007-07-11 01:23:22 as *** along with 1 person AaronDarling
  • Highways of gene sharing in prokaryotes
    PNAS, Vol. 102, No. 40. (4 October 2005), pp. 14332-14337.
    by Robert G Beiko, Timothy J Harlow, Mark A Ragan
    posted to dupvshgt by treangen on 2007-07-09 15:49:47 as *** along with 3 people and 2 groups ana AaronDarling Minty structural_bioinformatics Bioinformatics
  • Evolution and tinkering.
    Science, Vol. 196, No. 4295. (10 June 1977), pp. 1161-1166.
    by F Jacob
    posted to dupvshgt by treangen on 2007-07-09 13:23:11 as *** along with 2 people tny shivakumar3_14
  • The Nature and Dynamics of Bacterial Genomes
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1730-1733.
    by Howard Ochman, Liliana M Davalos
    posted to dupvshgt by treangen on 2007-07-09 13:15:38 as *** along with 6 people and 1 group pkm operon dayjm cmm AaronDarling perpetuale FAB-lab
  • Horizontal gene transfer: the path to maturity
    Molecular Microbiology, Vol. 50, No. 3. (2003), pp. 725-727.
    by Eugene V Koonin
    posted to dupvshgt by treangen on 2007-07-09 18:16:53 as *** along with 1 person karfunkel
  • Lateral gene transfer and the nature of bacterial innovation.
    Nature, Vol. 405, No. 6784. (18 May 2000), pp. 299-304.
    by H Ochman, JG Lawrence, EA Groisman
    posted to dupvshgt by treangen on 2007-07-09 15:31:45 as *** along with 5 people and 2 groups ana gregdingle jmeppley Ayest manzanita structural_bioinformatics Bioinformatics
  • Gene duplication and biased functional retention of paralogs in bacterial genomes
    Trends in Microbiology, Vol. 12, No. 4. (April 2004), pp. 148-154.
    by Dirk Gevers, Klaas Vandepoele, Cedric Simillion, Yves Van de Peer
    posted to dupvshgt by treangen on 2007-07-09 13:21:57 as ***
  • Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.
    Proc Natl Acad Sci U S A, Vol. 103, No. 42. (17 October 2006), pp. 15280-15287.
    by PS Chain, VJ Denef, KT Konstantinidis, LM Vergez, L Agulló, VL Reyes, L Hauser, M Córdova, L Gómez, M González, M Land, V Lao, F Larimer, JJ LiPuma, E Mahenthiralingam, SA Malfatti, CJ Marx, JJ Parnell, A Ramette, P Richardson, M Seeger, D Smith, T Spilker, WJ Sul, TV Tsoi, LE Ulrich, IB Zhulin, JM Tiedje
    posted to dupvshgt by treangen on 2007-07-09 15:59:55 as *** along with 2 people gelack manzanita
  • On surrogate methods for detecting lateral gene transfer.
    FEMS Microbiol Lett, Vol. 201, No. 2. (24 July 2001), pp. 187-191.
    by MA Ragan
    posted to dupvshgt by treangen on 2007-07-09 16:21:03 as *** along with 1 person karfunkel
  • A comparative study of duplications in bacteria and eukaryotes: the importance of telomeres
    Mol Biol Evol, Vol. 14, No. 10. (1 October 1997), pp. 1062-1074.
    by E Coissac, E Maillier, P Netter
    posted to dupvshgt by treangen on 2007-07-09 13:21:33 as ***
  • The fate of laterally transferred genes: life in the fast lane to adaptation or death.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 636-643.
    by W Hao, GB Golding
    posted to dupvshgt by treangen on 2007-07-09 21:22:51 as *** along with 2 people operon knaseanka
  • Genetic architecture of thermal adaptation in Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 98, No. 2. (16 January 2001), pp. 525-530.
    by MM Riehle, AF Bennett, AD Long
    posted to dupvshgt by treangen on 2007-07-06 11:48:10 as *** along with 2 people struan nsamways
  • The Evolutionary Fate and Consequences of Duplicate Genes
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155.
    by Michael Lynch, John S Conery
    posted to dupvshgt by treangen on 2007-07-09 18:42:53 as *** along with 7 people clearbluespring BioNica knaseanka arve nirfriedman echinotrix timflutre
  • Recurrent Gene Amplification and Soft Selective Sweeps during Evolution of Multidrug Resistance in Malaria Parasites
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 562-573.
    by Nair, Shalini, Nash, Denae, Sudimack, Daniel, Jaidee, Anchalee, Barends, Marion, Uhlemann, Anne-Catrin, Krishna, Sanjeev, Nosten, Francois, Anderson, JC Tim
    posted to dupvshgt by treangen on 2007-07-06 11:47:38 as ***
  • Evolution of sensory complexity recorded in a myxobacterial genome
    PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205.
    by BS Goldman, WC Nierman, D Kaiser, SC Slater, AS Durkin, JA Eisen, CM Ronning, WB Barbazuk, M Blanchard, C Field, C Halling, G Hinkle, O Iartchuk, HS Kim, C Mackenzie, R Madupu, N Miller, A Shvartsbeyn, SA Sullivan, M Vaudin, R Wiegand, HB Kaplan
    posted to dupvshgt by treangen on 2007-07-09 13:21:09 as *** along with 3 people bjorns stajich blobbybirdman
  • The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
    Proc Natl Acad Sci U S A, Vol. 103, No. 42. (17 October 2006), pp. 15582-15587.
    by MP McLeod, RL Warren, WW Hsiao, N Araki, M Myhre, C Fernandes, D Miyazawa, W Wong, AL Lillquist, D Wang, M Dosanjh, H Hara, A Petrescu, RD Morin, G Yang, JM Stott, JE Schein, H Shin, D Smailus, AS Siddiqui, MA Marra, SJ Jones, R Holt, FS Brinkman, K Miyauchi, M Fukuda, JE Davies, WW Mohn, LD Eltis
    posted to dupvshgt by treangen on 2007-07-09 13:20:57 as *** along with 1 person bjorns
  • The source of laterally transferred genes in bacterial genomes.
    Genome Biol, Vol. 4, No. 9. (2003)
    by V Daubin, E Lerat, G Perrière
    posted to dupvshgt by treangen on 2007-07-09 15:29:32 as ***
  • From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria.
    PLoS Biol, Vol. 1, No. 1. (October 2003)
    by E Lerat, V Daubin, NA Moran
    posted to dupvshgt by treangen on 2007-07-09 15:28:39 as *** along with 3 people fhsantanna knaseanka AaronDarling
  • Role of selection in fixation of gene duplications.
    J Theor Biol, Vol. 239, No. 2. (21 March 2006), pp. 141-151.
    by FA Kondrashov, AS Kondrashov
    posted to dupvshgt by treangen on 2007-07-11 17:45:58 as *** along with 2 people bpcusack bjorns
  • Lateral gene transfer: when will adolescence end?
    Mol Microbiol, Vol. 50, No. 3. (November 2003), pp. 739-749.
    by JG Lawrence, H Hendrickson
    posted to dupvshgt by treangen on 2007-07-09 13:28:28 as *** along with 3 people gcarbajosa jmeppley AaronDarling
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