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Tag dna-binding [24 articles]

Recent papers classified by the tag dna-binding.
  • Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 247-257.
    by JT Kadonaga
    posted to dna-binding factor review rnapolii sequence-specific transcription by xico on 2006-03-02 02:31:32 as **** along with 1 group WetBiology
  • Design of a combinatorial DNA microarray for protein-DNA interaction studies
    BMC Bioinformatics, Vol. 7 (03 October 2006), 429.
    by Julian Mintseris, Michael B Eisen
    posted to dna-binding hairpin microarray by stsaft on 2007-03-20 22:22:48 as **
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to dna-binding hairpin microarray by stsaft on 2007-03-20 22:15:51 as read along with 4 people and 1 group indigoviolet emilyhare samal blobbybirdman EisenLab
  • The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 571-576.
    by Paulette L Hayes, Betsy L Lytle, Brian F Volkman, Francis C Peterson
    posted to dna-binding human nmr protein structure znf by neils on 2008-04-10 00:01:30 as **
  • The N-Terminal Basic Domain of the HIV-1 Matrix Protein Does Not Contain a Conventional Nuclear Localization Sequence But Is Required for DNA Binding and Protein Self-Association
    Biochemistry (29 January 2008)
    by AC Hearps, KM Wagstaff, SC Piller, DA Jans
    posted to dna-binding hiv localisation nls nuclear by neils on 2008-01-29 11:28:07 as **
  • Dpp-responsive Silencers Are Bound by a Trimeric Mad-Medea Complex
    J. Biol. Chem., Vol. 280, No. 43. (28 October 2005), pp. 36158-36164.
    by Sheng Gao, Janet Steffen, Allen Laughon
    posted to dna-binding smads by brant to the group EisenLab on 2006-08-31 06:17:11 as ***
  • Differential sensitivities of transcription factor target genes underlie cell type-specific gene expression profiles.
    Proc Natl Acad Sci U S A (16 October 2006)
    by Kirby D D Johnson, Shin-Il I Kim, Emery H H Bresnick
    posted to chromatin dna-binding by brant to the group EisenLab on 2006-10-26 01:27:28 as *** along with 1 person tuck
  • Kinetics of Protein-DNA Interaction: Facilitated Target Location in Sequence-Dependent Potential
    Biophys. J., Vol. 87, No. 6. (1 December 2004), pp. 4021-4035.
    by Michael Slutsky, Leonid A Mirny
    posted to dna-binding kinetics by blobbybirdman to the group Myxo group on 2008-01-24 16:45:47 as **
  • New types of conserved sequence domains in DNA-binding regions of homing endonucleases.
    Trends Biochem Sci, Vol. 28, No. 9. (September 2003), pp. 473-477.
    by E Sitbon, S Pietrokovski
    posted to dna-binding homing-endonuclease motifs msa server by Einat to the group structural_bioinformatics on 2006-01-05 09:17:56 as read
  • Using structural motif templates to identify proteins with DNA binding function.
    Nucleic Acids Res, Vol. 31, No. 11. (1 June 2003), pp. 2811-2823.
    by S Jones, JA Barker, I Nobeli, JM Thornton
    posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 12:21:06 as ** along with 1 person medic0747
  • Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif.
    J Mol Biol, Vol. 330, No. 1. (27 June 2003), pp. 43-55.
    by WA McLaughlin, HM Berman
    posted to dna-binding dna-protein helix-turn-helix by chrn on 2005-08-05 23:47:38 as **
  • Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains.
    J Mol Biol, Vol. 327, No. 4. (4 April 2003), pp. 781-796.
    by AC Cheng, WW Chen, CN Fuhrmann, AD Frankel
    posted to dna-binding protein-dna refs_peptides sequence-specific by chrn on 2006-12-09 16:36:19 as ** along with 1 person medic0747
  • Recognition of Nucleic Acid Bases and Base-pairs by Hydrogen Bonding to Amino Acid Side-chains
    Journal of Molecular Biology, Vol. 327, No. 4. (4 April 2003), pp. 781-796.
    by Alan C Cheng, William W Chen, Cynthia N Fuhrmann, Alan D Frankel
    posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:07:30 as **
  • Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information
    Nucleic Acids Research, Vol. 33, No. 7. (2005), pp. 2129-2140.
    by Marialuisa Pellegrini-Calace, Janet M Thornton
    posted to dna-binding dna-protein helix-turn-helix hmm th_ibg by chrn on 2008-07-06 11:56:30 as **
  • A structural taxonomy of DNA-binding domains.
    Nature, Vol. 353, No. 6346. (24 October 1991), pp. 715-719.
    by SC Harrison
    posted to dna-binding dna-protein review th_ibg by chrn on 2008-07-06 13:12:14 as **
  • Target search of N sliding proteins on a DNA.
    Biophysical journal, Vol. 89, No. 2. (August 2005), pp. 895-902.
    by IM Sokolov, R Metzler, K Pant, MC Williams
    posted to dna-binding dna-protein by chrn on 2008-08-25 16:00:39 as **
  • Structural Basis of Core Promoter Recognition in a Primitive Eukaryote
    Cell (November 2003), pp. 413-424.
    by MA Schumacher, AOT Lau, PJ Johnson
    posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:09:29 as **
  • How do site-specific DNA-binding proteins find their targets?
    Nucl. Acids Res., Vol. 32, No. 10. (3 June 2004), pp. 3040-3052.
    by Stephen E Halford, John F Marko
    posted to binding dna-binding dna-protein site-specific by chrn on 2006-05-30 15:57:54 as ** along with 2 people JintuRabha kaarsinogen
  • Correlated Evolutionary Pressure at Interacting Transcription Factors and DNA Response Elements Can Guide the Rational Engineering of DNA Binding Specificity
    Journal of Molecular Biology, Vol. 350, No. 3. (15 July 2005), pp. 402-415.
    by Michele Raviscioni, Peili Gu, Minawar Sattar, Austin J Cooney, Olivier Lichtarge
    posted to dna-binding evolution factors transcription by chrn on 2006-12-13 21:01:49 as ** along with 4 people mdimmic kaarsinogen lulab cjeans
  • Prediction of DNA-binding residues from sequence
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i347-353.
    by Yanay Ofran, Venkatesh Mysore, Burkhard Rost
    posted to dna-binding dna-protein prediction sequence-specific th_ibg by chrn on 2008-08-25 16:31:41 as ** along with 3 people aalibes kaarsinogen GustavoLacerda
  • DPP-responsive silencers contain overlapping mad binding sites.
    J Biol Chem (6 July 2006)
    by Sheng Gao, Allen Laughon
    posted to dna-binding smads by brant on 2006-08-31 06:15:51 as ***** along with 1 person and 1 group indigoviolet EisenLab
  • Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 530-543.
    by Rohit Joshi, Jonathan M Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael A Crickmore, Vinitha Jacob, Aneel K Aggarwal, Barry Honig, Richard S Mann
    posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 20:01:55 as **** along with 2 people and 1 group cwbrown oelemento EisenLab
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to dna-binding microfluidics systems-biology transcription-factors by blobbybirdman on 2008-01-24 20:18:50 as ** along with 8 people and 2 groups jjray dpollard emilyhare adepace aswin skoch3 emptyhb brant EisenLab Koch_Lab
  • Hox transcription factors and their elusive mammalian gene targets
    Heredity, Vol. aop, No. current.
    by T Svingen, KF Tonissen,
    posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 19:45:50 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
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