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Tag cpg [118 articles]

Recent papers classified by the tag cpg.
  • Microarray-based survey of CpG islands identifies concurrent hyper- and hypomethylation patterns in tissues derived from patients with breast cancer.
    Genes Chromosomes Cancer (30 March 2006)
    by Arkadiusz Piotrowski, Magdalena Benetkiewicz, Uwe Menzel, Teresita Díaz D de Ståhl, Kiran Mantripragada, Gintautas Grigelionis, Patrick G G Buckley, Michał Jankowski, Jacek Hoffman, Dariusz Bała, Ewa Srutek, Ryszard Laskowski, Wojciech Zegarski, Jan P P Dumanski
    posted to breast cancer cpg methylation by tabu on 2006-04-03 05:11:31 as **
  • Learning human arm movements by imitation: Evaluation of biologicallyinspired connectionist architecture
    (2001)
    by A Billard, M Mataric
    posted to cerebellum cpg imitation learning muscle-model reflex spinal by synergenz on 2006-06-19 11:40:42 as ** along with 1 person paulclinger
  • A model for learning human reaching movements.
    Biol Cybern, Vol. 77, No. 3. (September 1997), pp. 173-183.
    by A Karniel, GF Inbar
    posted to control-signal cpg hill learning muscle-model pulse-step reflex spinal by synergenz on 2006-06-22 16:53:38 as **
  • Estimate of the Mutation Rate per Nucleotide in Humans
    Genetics, Vol. 156, No. 1. (1 September 2000), pp. 297-304.
    by Michael W Nachman, Susan L Crowell
    posted to mutation_rate human cpg by stajich on 2008-08-05 23:53:11 as ** along with 4 people and 1 group skumagai sriram_s nagendraproj ryanraaum Berkeley Mycology
  • Activity-dependent modification of inhibitory synapses in models of rhythmic neural networks.
    Nat Neurosci, Vol. 4, No. 3. (March 2001), pp. 297-303.
    by C Soto-Treviño, KA Thoroughman, E Marder, LF Abbott
    posted to cpg by spurg on 2007-06-11 20:08:28 as **
  • Could plasticity of inhibition pattern pattern generators?
    Nat Neurosci, Vol. 4, No. 3. (March 2001), pp. 223-224.
    by RD Traub
    posted to cpg by spurg on 2007-06-11 20:06:59 as **
  • Expression of the CTCF-paralogous cancer-testis gene, brother of the regulator of imprinted sites (BORIS), is regulated by three alternative promoters modulated by CpG methylation and by CTCF and p53 transcription factors.
    Nucleic acids research, Vol. 35, No. 21. (2007), pp. 7372-7388.
    by S Renaud, EM Pugacheva, MD Delgado, R Braunschweig, Z Abdullaev, D Loukinov, J Benhattar, V Lobanenkov
    posted to boris cpg ctcf methylation p53 by sebastien_vigneau on 2008-04-16 20:42:10 as read
  • Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis
    PNAS (18 July 2007), 0704468104.
    by Joanne L Attema, Peter Papathanasiou, Camilla E Forsberg, Jian Xu, Stephen T Smale, Irving L Weissman
    posted to chip-chip cpg h3ac h3k4me hematopoiesis methylation stemness by sebastien_vigneau on 2007-07-27 13:56:39 as *** along with 1 person epigenetics
  • CpG Island Mapping by Epigenome Prediction.
    PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007)
    by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer
    posted to bioinformatics cpg epigenetics methylation by sebastien_vigneau on 2007-06-17 07:59:35 as **** along with 6 people kaarsinogen zwang oelemento fpattyn rschulz inesdesantiago
  • Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function.
    Proc Natl Acad Sci U S A, Vol. 100, No. 11. (27 May 2003), pp. 6777-6782.
    by X Zhao, T Ueba, BR Christie, B Barkho, MJ McConnell, K Nakashima, ES Lein, BD Eadie, AR Willhoite, AR Muotri, RG Summers, J Chun, KF Lee, FH Gage
    posted to cpg mbd methylation by sebastien_vigneau on 2007-07-18 14:14:43 as ** along with 1 person nstimson
  • Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements
    Nucl. Acids Res. (13 September 2007), gkm662.
    by Marcel W Coolen, Aaron L Statham, Margaret Gardiner-Garden, Susan J Clark
    posted to cpg maldi-tof methylation technique by sebastien_vigneau on 2007-10-10 12:13:23 as ** along with 1 person epigenetics
  • Dynamics of Dnmt1 interaction with the replication machinery and its role in postreplicative maintenance of DNA methylation.
    Nucleic Acids Res (18 June 2007)
    by Lothar Schermelleh, Andrea Haemmer, Fabio Spada, Nicole Rösing, Daniela Meilinger, Ulrich Rothbauer, M Cristina Cardoso, Heinrich Leonhardt
    posted to cpg dnmt1 methylation pcna by sebastien_vigneau on 2007-07-12 15:14:35 as **
  • Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation.
    The Journal of cell biology, Vol. 169, No. 5. (6 June 2005), pp. 733-743.
    by A Brero, HP Easwaran, D Nowak, I Grunewald, T Cremer, H Leonhardt, MC Cardoso
    posted to methylation mecp2 mbd2 differentiation cpg by sebastien_vigneau on 2008-07-14 19:32:25 as read
  • Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development.
    Genes Dev, Vol. 15, No. 6. (15 March 2001), pp. 710-723.
    by B Hendrich, J Guy, B Ramsahoye, VA Wilson, A Bird
    posted to cpg mbd methylation by sebastien_vigneau on 2007-07-18 13:53:34 as *****
  • Directing DNA methylation to inhibit gene expression.
    Cellular and molecular neurobiology, Vol. 26, No. 4-6. (g 2006), pp. 425-438.
    by AR Hoffman, JF Hu
    posted to technology oligo methylation inhibition cpg by sebastien_vigneau on 2008-05-30 20:00:58 as **
  • The methyl-CpG binding domain and the evolving role of DNA methylation in animals.
    Trends Genet, Vol. 19, No. 5. (May 2003), pp. 269-277.
    by B Hendrich, S Tweedie
    posted to cpg mbd methylation by sebastien_vigneau on 2007-07-18 13:47:03 as ***** along with 1 person joepickrell
  • Methylation of CpG sites of two X-linked genes coincides with X-inactivation in the female mouse embryo but not in the germ line.
    Nature genetics, Vol. 2, No. 2. (October 1992), pp. 161-166.
    by M Grant, M Zuccotti, M Monk
    posted to x-chromosome methylation inactivation cpg by sebastien_vigneau on 2008-05-21 22:53:02 as read
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to cpg dna-methylation methylation by sebastien_vigneau on 2007-11-14 08:52:18 as ** along with 1 person zwang
  • Epigenetic Natural Variation in Arabidopsis thaliana.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Matthew W W Vaughn, Miloš Tanurd Ić, Zachary Lippman, Hongmei Jiang, Robert Carrasquillo, Pablo D D Rabinowicz, Neilay Dedhia, W Richard R McCombie, Nicolas Agier, Agnès Bulski, Vincent Colot, R W W Doerge, Robert A A Martienssen
    posted to arabidopsis cpg epigenetics methylation polymorphism sirna transposon by sebastien_vigneau on 2007-07-12 09:04:16 as ** along with 2 people and 1 group bpcusack kengg Plantandetc
  • Identification and characterization of a family of mammalian methyl-CpG binding proteins.
    Mol Cell Biol, Vol. 18, No. 11. (November 1998), pp. 6538-6547.
    by B Hendrich, A Bird
    posted to cpg mbd methylation by sebastien_vigneau on 2007-07-18 13:29:44 as *****
  • Computational identification of promoters and first exons in the human genome.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 412-417.
    by RV Davuluri, I Grosse, MQ Zhang
    posted to cgi cpg genomics promoters by saxonov on 2005-06-27 18:45:24 as ** along with 1 person olympos
  • Contribution of nitric oxide to CpG-mediated protection against Listeria monocytogenes.
    Infect Immun, Vol. 73, No. 6. (June 2005), pp. 3803-3805.
    by S Ito, KJ Ishii, A Ihata, DM Klinman
    posted to cpg listeria no by ryu-chan on 2005-07-21 06:09:21 as *****
  • Toll-like receptor 9, CpG DNA and innate immunity.
    Curr Mol Med, Vol. 2, No. 6. (September 2002), pp. 545-556.
    by AA Ashkar, KL Rosenthal
    posted to bacteria cpg dna immunity innate methylation tlr9 vaccine by rschulz on 2007-12-11 10:14:14 as read
  • Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element.
    Journal of biomolecular structure & dynamics, Vol. 26, No. 1. (August 2008), pp. 9-16.
    by F Salih, B Salih, S Kogan, EN Trifonov
    posted to periodicity nucleosome dna-methylation cpg alu by rschulz on 2008-08-20 15:09:42 as **
  • Epigenetics: Perceptive enzymes
    Nature, Vol. 449, No. 7159. (2007), pp. 148-149.
    by Anne C Ferguson-Smith, John M Greally
    posted to cgi cpg dinucleotide dna dnmt3a dnmt3l epigenetics genome imprinting methylation periodicity sequence by rschulz on 2007-12-03 16:19:53 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation
    Nature (22 August 2007)
    by Da Jia, Renata Z Jurkowska, Xing Zhang, Albert Jeltsch, Xiaodong Cheng
    posted to cgi cpg crystal dinucleotide dna dnmt3a dnmt3l epigenetics imprinting methylation periodicity protein sequence structure by rschulz on 2007-12-03 16:18:22 as read along with 1 person epigenetics
  • Periodicity of eight nucleotides in purine distribution around human genomic CpG dinucleotides.
    Somatic cell and molecular genetics, Vol. 21, No. 2. (March 1995), pp. 91-98.
    by O Clay, W Schaffner, K Matsuo
    posted to periodicity human dinucleotide cpg by rschulz on 2008-08-20 10:51:48 as **
  • Local and Systemic Effects of Intranodally Injected CpG-C Immunostimulatory-Oligodeoxyribonucleotides in Macaques.
    J Immunol, Vol. 177, No. 12. (15 December 2006), pp. 8531-8541.
    by N Teleshova, J Kenney, G Van Nest, J Marshall, JD Lifson, I Sivin, J Dufour, R Bohm, A Gettie, M Robbiani
    posted to cpg in vivo by phd2007 on 2006-12-07 04:09:53 as **
  • The motor infrastructure: from ion channels to neuronal networks.
    Nat Rev Neurosci, Vol. 4, No. 7. (July 2003), pp. 573-586.
    by S Grillner
    posted to connectivite cpg reseau revue by pgastrein on 2007-11-15 15:00:42 as **
  • CpG motif-independent activation of TLR9 upon endosomal translocation of ldquonaturalrdquo phosphodiester DNA
    European Journal of Immunology, Vol. 36, No. 2. (2006), pp. 431-436.
    by Kei Yasuda, Mark Rutz, Beatrix Schlatter, Jochen Metzger, Peter b Luppa, Frank Schmitz, Tobias Haas, Antje Heit, Stefan Bauer, Hermann Wagner
    posted to tlr9 cpg by Pezda on 2008-07-29 05:38:38 as read
  • Interactions between bacterial CpG-DNA and TLR9 bridge innate and adaptive immunity
    Current Opinion in Microbiology, Vol. 5, No. 1. (1 February 2002), pp. 62-69.
    by Hermann Wagner
    posted to tlr9 signaling review innate_immunity cpg adaptive_immunity by Pezda on 2008-07-29 05:37:12 as read
  • Direct Evidence that Toll-like Receptor 9 (TLR9) Functionally Binds Plasmid DNA by Specific Cytosine-phosphate-guanine Motif Recognition
    J. Biol. Chem., Vol. 279, No. 15. (9 April 2004), pp. 15124-15129.
    by Sylvie Cornelie, Johan Hoebeke, Anne-Marie Schacht, Benjamin Bertin, Jerome Vicogne, Monique Capron, Gilles Riveau
    posted to tlr9 methylation cpg by Pezda on 2008-07-29 05:35:57 as **
  • Properties regulating the nature of the plasmacytoid dendritic cell response to Toll-like receptor 9 activation.
    J Exp Med (24 July 2006)
    by Cristiana Guiducci, Gary Ott, Jean H H Chan, Emily Damon, Carlo Calacsan, Tracy Matray, Kyung-Dall D Lee, Robert L L Coffman, Franck J J Barrat
    posted to type_1_ifn tlr9 plasmacytoid cpg by Pezda on 2008-07-29 05:32:53 as ** along with 1 person eisei
  • Deviations from Expected Frequencies of CpG Dinucleotides in Herpesvirus DNAs May Be Diagnostic of Differences in the States of Their Latent Genomes
    J Gen Virol, Vol. 70, No. 4. (1 April 1989), pp. 837-855.
    by RW Honess, UA Gompels, BG Barrell, M Craxton, KR Cameron, R Staden, YN Chang, GS Hayward
    posted to methylation herpesvirus genome cpg by Pezda on 2008-07-29 05:31:47 as ***
  • Toll-like receptor 9 binds single-stranded CpG-DNA in a sequence- and pH-dependent manner
    European Journal of Immunology, Vol. 34, No. 9. (2004), pp. 2541-2550.
    by Mark Rutz, Jochen Metzger, Tanja Gellert, Peter Luppa, Grayson b Lipford, Hermann Wagner, Stefan Bauer
    posted to tlr9 dna cpg by Pezda on 2008-07-29 05:29:44 as read
  • DNA and its cationic lipid complexes induce CpG motif-dependent activation of murine dendritic cells
    Immunology, Vol. 120, No. 3. (2007), pp. 295-302.
    by Takaharu Yoshinaga, Kei Yasuda, Yoshiyuki Ogawa, Makiya Nishikawa, Yoshinobu Takakura
    posted to dc24 dc cpg by Pezda on 2008-07-29 05:21:18 as read
  • Nucleic Acids Exert a Sequence-independent Cooperative Effect on Sequence-dependent Activation of Toll-like Receptor 9
    J. Biol. Chem., Vol. 282, No. 19. (11 May 2007), pp. 13944-13953.
    by Jason Kindrachuk, Jean E Potter, Robert Brownlie, Andrew D Ficzycz, Philip J Griebel, Neeloffer Mookherjee, George K Mutwiri, Lorne A Babiuk, Scott Napper
    posted to tlr9 cpg by Pezda on 2008-07-29 05:16:57 as read
  • Genomic DNA methylation: the mark and its mediators
    Trends in Biochemical Sciences, Vol. 31, No. 2. (February 2006), pp. 89-97.
    by Robert J Klose, Adrian P Bird
    posted to review methylation genome dna cpg by Pezda on 2008-07-30 03:50:35 as read
  • Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses
    Journal of Molecular Evolution, Vol. 62, No. 5. (1 May 2006), pp. 551-563.
    by Laura Shackelton, Colin Parrish, Edward Holmes
    posted to virus dna cpg_suppression cpg by Pezda on 2008-07-30 03:49:01 as **
  • Recognition of CpG DNA is mediated by signaling pathways dependent on the adaptor protein MyD88
    Current Biology, Vol. 10, No. 18. (14 September 2000), pp. 1139-1142.
    by Markus Schnare, Agnieszka C Holt, Kiyoshi Takeda, Shizuo Akira, Ruslan Medzhitov
    posted to myd88 innate_immunity immunostimulatory cpg bacteria by Pezda on 2008-07-29 05:07:20 as **
  • Identification of CpG oligonucleotide sequences with high induction of IFN-α/β; in plasmacytoid dendritic cells
    European Journal of Immunology, Vol. 31, No. 7. (2001), pp. 2154-2163.
    by Anne Krug, Simon Rothenfusser, Veit Hornung, Bernd Jahrsdörfer, Susan Blackwell, Zuhair K Ballas, Stefan Endres, Arthur M Krieg, Gunther Hartmann
    posted to type_1_ifn plasmacytoid dc cpg by Pezda on 2008-07-29 05:04:41 as **
  • TLR9 in Health and Disease
    International Reviews of Immunology, Vol. 25, No. 3-4. (August 2006), pp. 155-181.
    by Jorg Vollmer
    posted to tlr9 review cpg by Pezda on 2008-07-29 04:55:37 as read
  • CpG motifs in bacterial DNA trigger direct B-cell activation
    Nature, Vol. 374, No. 6522. (6 April 1995), pp. 546-549.
    by Arthur M Krieg, Ae-Kyung Yi, Sara Matson, Thomas J Waldschmidt, Gail A Bishop, Rebecca Teasdale, Gary A Koretzky, Dennis M Klinman
    posted to immunostimulatory cpg b_cells bacteria antibody by Pezda on 2008-07-29 04:52:55 as read
  • Sequence requirements for oligodeoxyribonucleotide inhibitory activity
    International Immunology, Vol. 17, No. 4. (April 2005), pp. 411-420.
    by Robert F Ashman, Adam J Goeken, Jennifer Drahos, Petar Lenert
    posted to tlr9 inhibitory cpg by Pezda on 2008-07-29 04:51:50 as read
  • CPG MOTIFS IN BACTERIAL DNA AND THEIR IMMUNE EFFECTS
    Annual Review of Immunology, Vol. 20, No. 1. (2002), pp. 709-760.
    by Arthur M Krieg
    posted to tlr9 review immunostimulatory cpg by Pezda on 2008-07-29 04:50:59 as read
  • A Toll-like receptor recognizes bacterial DNA
    Nature, Vol. 408, No. 6813. (7 December 2000), pp. 740-745.
    by Hiroaki Hemmi, Osamu Takeuchi, Taro Kawai, Tsuneyasu Kaisho, Shintaro Sato, Hideki Sanjo, Makoto Matsumoto, Katsuaki Hoshino, Hermann Wagner, Kiyoshi Takeda, Shizuo Akira
    posted to tlr9 dna cpg bacteria by Pezda on 2008-07-29 04:48:50 as *** along with 1 person tomhebbron
  • New Twists on the Epigenetics of CpG Islands
    Genome Res., Vol. 12, No. 4. (1 April 2002), pp. 525-526.
    by Rolf Ohlsson, Chandrasekhar Kanduri
    posted to cpg by olympos on 2007-01-30 15:20:53 as **
  • CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.
    PLoS Genet, Vol. 2, No. 3. (March 2006)
    by C Bock, M Paulsen, S Tierling, T Mikeska, T Lengauer, J Walter
    posted to cpg by olympos on 2007-01-29 21:30:23 as ** along with 5 people clearbluespring oelemento kaarsinogen eckart_bindewald epigenetics
  • EPIGENOMICS: BEYOND CPG ISLANDS
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 446-455.
    by Melissa J Fazzari, John M Greally
    posted to cpg epigenomics review by olympos on 2006-12-20 21:36:08 as ** along with 2 people rdiaz vega
  • CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure
    PLoS Genetics, Vol. 2, No. 3. (1 March 2006), e26.
    by Christoph Bock, Martina Paulsen, Sascha Tierling, Thomas Mikeska, Thomas Lengauer, Jörn Walter
    posted to cpg by olympos on 2006-12-20 21:34:35 as *** along with 3 people rdiaz cberry inesdesantiago
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