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Tag complexes [134 articles]

Recent papers classified by the tag complexes.
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to bio-informatics cell complexes high-throughput large-scale machinery modularity protein proteome proteomics yeast by xico on 2006-01-30 19:41:37 as **** along with 23 people and 10 groups Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • Posttranscriptional Generation of Macromolecular Complexes
    Molecular Cell, Vol. 12, No. 6. (December 2003), pp. 1347-1349.
    by JD Keene
    posted to complexes macromolecular posttranscriptional by xico on 2006-01-17 02:05:38 as ** along with 1 group WetBiology
  • Integration of genomic datasets to predict protein complexes in yeast.
    J Struct Funct Genomics, Vol. 2, No. 2. (2002), pp. 71-81.
    by R Jansen, N Lan, J Qian, M Gerstein
    posted to complexes pcfbim07 yeast by winterschlaefer on 2007-08-27 15:07:29 as **
  • The assembly of membrane proteins into complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Daniel O Daley
    posted to complexes membrane_protein by viktor21614 on 2008-07-28 08:30:53 as ** along with 1 person paulschlesinger
  • Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics.
    Proc Natl Acad Sci U S A, Vol. 95, No. 26. (22 December 1998), pp. 15189-15193.
    by TI Zarembinski, LW Hung, HJ Mueller-Dieckmann, KK Kim, H Yokota, R Kim, SH Kim
    posted to assignment complexes function genomics protein-ligand structural by siebertm on 2007-05-20 12:52:43 as * along with 1 person and 1 group Sarat MAGGIE
  • Presentations of omega-categories by directed complexes
    (1997)
    by S Crans, R Steiner
    posted to algebraic-topology complexes higher-dimensional-category-theory omega-categories presentation presentations by Scis0000002 on 2007-07-13 08:30:49 as **
  • Q-Analysis of Fractal Sets
    by Ay S Erzan
    posted to algebraic-geometry algebraic-topology complexes fractality homology homotopy non-polyhedral q-analysis simplexes topological-analysis topology by Scis0000002 on 2007-07-14 14:31:45 as **
  • The homology of real subspace arrangements
    ArXiv Mathematics e-prints (October 2006)
    by EM Rains
    posted to arrangements bundles complexes homology lattice-of-subspaces order-complexes simplicial-complexes subspaces by Scis0000002 on 2008-05-18 14:47:04 as **
  • Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response
    Genes Dev., Vol. 20, No. 11. (1 June 2006), pp. 1405-1428.
    by Michael G Rosenfeld, Victoria V Lunyak, Christopher K Glass
    posted to complexes pathways by reidy on 2006-08-31 16:58:18 as **
  • Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomes.
    J Mol Biol, Vol. 357, No. 1. (17 March 2006), pp. 292-312.
    by S Cao, SJ Chen
    posted to biophysics complexes prediction rna spliceosome by physics on 2007-05-05 22:25:06 as *** along with 1 person mtagaya
  • Thermodynamics of RNA-RNA Binding.
    Bioinformatics (29 January 2006)
    by Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H H Bernhart, Peter F F Stadler, Ivo L L Hofacker
    posted to complexes prediction rna by physics on 2007-05-05 22:30:38 as *** along with 6 people and 3 groups marcius eckart_bindewald andersbj arcticrasta ilh mtw microRNA BioinfoCIPF SGU-CIPF
  • Secondary Structure Prediction of Interacting RNA Molecules
    Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001.
    by Mirela Andronescu, Zhi C Zhang, Anne Condon
    posted to complexes prediction rna by physics on 2007-05-05 22:38:18 as *** along with 4 people and 2 groups marcius eckart_bindewald Hosna cthachuk BioinfoCIPF SGU-CIPF
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to complexes evolution protein by paulschlesinger on 2008-06-26 01:43:57 as ** along with 7 people psique marck neils jwm zwang faion phoenixzxl
  • Bcl-XL Inhibits Membrane Permeabilization by Competing with Bax
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e147.
    by Lieven P Billen, Candis L Kokoski, Jonathan F Lovell, Brian Leber, David W Andrews
    posted to bax bclxl billen08pdf complexes inhibition interaction by paulschlesinger on 2008-06-12 18:36:52 as ** along with 1 person biomcgary
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to complexes cyc kegg membership pathway by mdstobbe on 2008-04-09 07:43:17 as ** along with 12 people and 1 group tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali paolomarcatili microbiology_nijmegen
  • An automated method for finding molecular complexes in large protein interaction networks.
    BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003)
    by GD Bader, CW Hogue
    posted to protein-protein-interactions networks complexes algorithm by massivemayhem on 2007-01-16 08:55:17 as ** along with 7 people and 1 group cswinburne jiny dragonrez lfriedl nirfriedman carlk ethkim kdl
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to dynamics complexes cell-cycle by massivemayhem on 2007-01-18 10:57:39 as ** along with 11 people and 1 group mdimmic chad_davis balajis wnpx koller cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
  • In vitro reconstitution and preparative purification of complexes between the chemokine receptor CXCR4 and its ligands SDF-1alpha, gp120-CD4 and AMD3100.
    Protein Expr Purif, Vol. 50, No. 2. (December 2006), pp. 203-214.
    by A Dukkipati, J Vaclavikova, D Waghray, KC Garcia
    posted to and between chemokine complexes cxcr4 of purification receptor sdf-1 the by masako61 on 2007-03-02 08:37:57 as read
  • D<FONT SIZE='-2'>OCKGROUND</FONT> system of databases for protein recognition studies: Unbound structures for docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Ying Gao, Dominique Douguet, Andrey Tovchigrechko, Ilya A Vakser
    posted to unbound complexes by marti on 2008-09-15 11:38:44 as read along with 4 people bicko chad_davis RamuAnandakrishnan timg
  • Evolution of cell cycle control: same molecular machines, different regulation.
    Cell Cycle, Vol. 6, No. 15. (1 August 2007), pp. 1819-1825.
    by U de Lichtenberg, TS Jensen, S Brunak, P Bork, LJ Jensen
    posted to cell-cycle complexes evolution expression phosphorylation regulation by larsjuhljensen on 2008-03-24 13:34:17 as read
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to cell-cycle complexes degradation evolution expression phosphorylation regulation by larsjuhljensen on 2008-03-24 13:50:23 as read along with 7 people and 1 group JAShapiro adepace koller olympos ccr cjeans kluck EisenLab
  • Speciation of cadmium-[gamma]-glutamyl peptides complexes in cells of the marine microalga Phaeodactylum tricornutum
    Plant Science, Vol. 163, No. 4. (October 2002), pp. 807-813.
    by Elisabetta Morelli, Boris H Cruz, Simone Somovigo, Gioacchino Scarano
    posted to acid-labile-sulfur sulfur phytochelatin complexes by kalipyles on 2008-09-11 20:23:46 as *****
  • notes Coats, Tethers, Rabs, and SNAREs Work Together to Mediate the Intracellular Destination of a Transport Vesicle
    Developmental Cell, Vol. 12, No. 5. (8 May 2007), pp. 671-682.
    by Huaqing Cai, Karin Reinisch, Susan Ferro-Novick
    posted to complexes sorting tethering by heb on 2007-07-31 19:59:27 as ***
  • Predicting free energy landscapes for complexes of double-stranded chain molecules
    The Journal of Chemical Physics, Vol. 114, No. 9. (2001), pp. 4253-4266.
    by Wenbing Zhang, Shi J Chen
    posted to complexes energy-landscapes rna structure by condon to the group beta on 2006-04-13 22:50:07 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
    Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203.
    by M Topf, ML Baker, B John, W Chiu, A Sali
    posted to algorithm alignment complexes data_integration em modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:37:06 as **
  • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    International journal of biological macromolecules (21 May 2008)
    by Petras J J Kundrotas, Marc F F Lensink, Emil Alexov
    posted to algorithm alignment binding complexes data_integration modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-06-29 11:15:36 as **
  • notes Structural modeling of protein interactions by analogy: application to PSD-95.
    PLoS Comput Biol, Vol. 2, No. 11. (10 November 2006)
    by D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, A Sali
    posted to algorithm binding complexes docking modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:32:13 as *** along with 1 person bicko
  • A role for phosphatidic acid in COPI vesicle fission yields insights into Golgi maintenance.
    Nature cell biology (7 September 2008)
    by Jia-Shu S Yang, Helge Gad, Stella Y Y Lee, Alexander Mironov, Leiliang Zhang, Galina V V Beznoussenko, Carmen Valente, Gabriele Turacchio, Akua N N Bonsra, Guangwei Du, Gianluca Baldanzi, Andrea Graziani, Sylvain Bourgoin, Michael A A Frohman, Alberto Luini, Victor W W Hsu
    posted to vesicle pinching_off membrane mechanism interactions golgi curvature complexes coatomer budding by faion on 2008-09-09 15:48:16 as **
  • How to analyze protein complexes by 2D blue native SDS-PAGE.
    Proteomics, Vol. 7 Suppl 1 (September 2007), pp. 6-16.
    by V Reisinger, LA Eichacker
    posted to complexes quantitative separation stoichiometry by faion on 2008-04-19 15:50:10 as **
  • Blue native PAGE.
    Nat Protoc, Vol. 1, No. 1. (2006), pp. 418-428.
    by I Wittig, HP Braun, H Schägger
    posted to complexes interactions methods preparation purification separation stoichiometry by faion on 2008-06-30 09:05:18 as ** along with 2 people and 1 group jyuh stevanspringer FAB-lab
  • Structure of the Sec13/31 COPII coat cage
    Nature, Vol. 439, No. 7073., pp. 234-238.
    by Scott M Stagg, Cemal Gã¼rkan, Douglas M Fowler, Paul Lapointe, Ted R Foss, Clinton S Potter, Bridget Carragher, William E Balch
    posted to complexes cryo curvature interactions structure topology traffic vesicle by faion on 2008-05-08 12:49:07 as **
  • Functional immobilization of a DNA-binding protein at a membrane interface via histidine tag and synthetic chelator lipids.
    Biochemistry, Vol. 35, No. 4. (30 January 1996), pp. 1100-1105.
    by C Dietrich, O Boscheinen, KD Scharf, L Schmitt, R Tampé
    posted to affinity_tags complexes interactions lipids methods monolayer nickel purification by faion on 2008-07-22 10:07:42 as **
  • Differential localization of coatomer complex isoforms within the Golgi apparatus.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 11. (13 March 2007), pp. 4425-4430.
    by J Moelleken, J Malsam, MJ Betts, A Movafeghi, I Reckmann, I Meissner, A Hellwig, RB Russell, T Söllner, B Brügger, FT Wieland
    posted to coatomer complexes copi interactions isotypes membrane regulation stoichiometry traffic vesicle by faion on 2008-05-17 13:46:17 as **
  • Comparison of affinity tags for protein purification.
    Protein expression and purification, Vol. 41, No. 1. (May 2005), pp. 98-105.
    by JJ Lichty, JL Malecki, HD Agnew, DJ Michelson-Horowitz, S Tan
    posted to affinity_tags complexes methods preparation protein purification separation by faion on 2008-05-30 11:48:56 as **
  • New insights into the composition, molecular mass and stoichiometry of the protein complexes of plant mitochondria.
    The Plant journal : for cell and molecular biology, Vol. 9, No. 3. (March 1996), pp. 357-368.
    by L Jänsch, V Kruft, UK Schmitz, HP Braun
    posted to complexes interactions purification separation by faion on 2008-04-02 17:59:03 as ****
  • Reversible fixation for the study of morphology and macromolecular composition of fragile biological structures.
    Eur J Cell Biol, Vol. 32, No. 1. (November 1983), pp. 1-6.
    by W Baschong, C Baschong-Prescianotto, E Kellenberger
    posted to complexes cross-linking interactions preparation by faion on 2008-02-18 13:15:26 as *****
  • Membrane recruitment of coatomer and binding to dilysine signals are separate events.
    The Journal of biological chemistry, Vol. 275, No. 37. (15 September 2000), pp. 29162-29169.
    by M Gomez, SJ Scales, TE Kreis, F Perez
    posted to regulation mechanism interactions copi conform_change complexes coatomer by faion on 2008-09-04 13:00:19 as **
  • Structural organization of the 19S proteasome lid: insights from MS of intact complexes.
    PLoS Biol, Vol. 4, No. 8. (August 2006)
    by M Sharon, T Taverner, XI Ambroggio, RJ Deshaies, CV Robinson
    posted to complexes interactions ms stoichiometry topology by faion on 2008-04-20 12:07:58 as ** along with 1 person zhlei
  • Real-time assays for the assembly-disassembly cycle of COP coats on liposomes of defined size.
    Methods in enzymology, Vol. 404 (2005), pp. 95-107.
    by J Bigay, B Antonny
    posted to clathrin coatomer complexes copi membrane methods preparation purification separation topology vesicle by faion on 2008-06-02 14:51:14 as **
  • Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling
    Acc. Chem. Res. (4 March 2008)
    by Thomas Taverner, Hern&#xe1, Helena Ndez, Michal Sharon, Brandon T Ruotolo, Matak-Vinkovic&#x301, Dijana, Damien Devos, Robert B Russell, Carol V Robinson
    posted to complexes interactions ms separation stoichiometry topology by faion on 2008-04-19 15:55:26 as ** along with 1 person chad_davis
  • Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form.
    Anal Biochem, Vol. 199, No. 2. (December 1991), pp. 223-231.
    by H Schägger, G von Jagow
    posted to complexes preparation separation by faion on 2008-03-27 18:22:54 as ** along with 1 person and 1 group stevanspringer FAB-lab
  • Structural analysis of membrane-bound retrovirus capsid proteins.
    The EMBO journal, Vol. 16, No. 6. (17 March 1997), pp. 1199-1213.
    by E Barklis, J McDermott, S Wilkens, E Schabtach, MF Schmid, S Fuller, S Karanjia, Z Love, R Jones, Y Rui, X Zhao, D Thompson
    posted to affinity_tags complexes hiv methods monolayer preparation purification separation by faion on 2008-06-30 14:29:19 as **
  • Subunit architecture of multimeric complexes isolated directly from cells
    EMBO Reports, Vol. aop, No. current. (18 August 2006)
    by Helena Hernandez, Andrzej Dziembowski, Thomas Taverner, Bertrand Seraphin, Carol V Robinson
    posted to complexes interactions ms stoichiometry topology by faion on 2008-04-20 12:08:38 as ** along with 1 person chad_davis
  • Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis.
    Electrophoresis, Vol. 27, No. 7. (April 2006), pp. 1277-1287.
    by Z Nováková, P Man, P Novák, P Hozák, Z Hodný
    posted to complexes methods purification separation by faion on 2008-03-27 18:09:56 as **
  • Determination of the stoichiometry of protein complexes using liquid chromatography with fluorescence and mass spectrometric detection of fluorescently labeled proteolytic peptides.
    Proteomics, Vol. 4, No. 3. (March 2004), pp. 669-676.
    by EO Hochleitner, P Sondermann, F Lottspeich
    posted to complexes fluo ms stoichiometry by faion on 2008-04-20 11:08:39 as **
  • Separation and detection of intact noncovalent protein complexes from mixtures by on-line capillary isoelectric focusing-mass spectrometry.
    Anal Chem, Vol. 72, No. 21. (1 November 2000), pp. 5356-5360.
    by S Martinović, SJ Berger, L Pasa-Tolić, RD Smith
    posted to complexes methods purification by faion on 2008-03-27 18:07:33 as **
  • Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains.
    Nature structural biology, Vol. 10, No. 10. (October 2003), pp. 856-863.
    by B DeLaBarre, AT Brunger
    posted to complexes cryo purification structure by faion on 2008-05-08 10:20:55 as **
  • Structural basis for cargo regulation of COPII coat assembly.
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 474-484.
    by SM Stagg, P LaPointe, A Razvi, C Gürkan, CS Potter, B Carragher, WE Balch
    posted to copii complexes budding by faion on 2008-09-16 21:47:31 as **
  • Structure and organization of coat proteins in the COPII cage.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1325-1336.
    by S Fath, JD Mancias, X Bi, J Goldberg
    posted to complexes cryo interactions structure topology traffic vesicle by faion on 2008-05-08 12:34:49 as **
  • SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family
    Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328.
    by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H Citterich
    posted to algorithm bioinformatics complexes computational domains motifs prediction rev_ref sh3 specificity structure by Evangelia on 2007-10-01 17:58:07 as read along with 2 people carlescorbi biehl
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