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Tag community_genomics [20 articles]

Recent papers classified by the tag community_genomics.
  • Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
    posted to community_genomics by vrich on 2008-05-08 23:02:07 as ** along with 10 people and 5 groups jlgreen oelemento vaulot jmeppley alexisfjdufresne bluto jyuh djkt neils kinestetika Green Lab iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to hot depth_profile community_genomics by vrich on 2008-05-19 22:21:35 as ** along with 11 people and 4 groups djkt jlgreen mjetten mcox eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez iSEEM Green Lab microbiology_nijmegen Microbial-Ecology
  • Environmental Genome Shotgun Sequencing of the Sargasso Sea
    Science, Vol. 304, No. 5667. (02 April 2004), pp. 66-74.
    by Craig C Venter, Karin Remington, John F Heidelberg, Aaron L Halpern, Doug Rusch, Jonathan A Eisen, Dongying Wu, Ian Paulsen, Karen E Nelson, William Nelson, Derrick E Fouts, Samuel Levy, Anthony H Knap, Michael W Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O Smith
    posted to community_genomics by vrich on 2008-05-18 21:08:55 as ** along with 15 people and 1 group pradiptaray mcox knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan Microbial-Ecology
  • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
    DNA Res, Vol. 14, No. 4. (31 August 2007), pp. 169-181.
    by K Kurokawa, T Itoh, T Kuwahara, K Oshima, H Toh, A Toyoda, H Takami, H Morita, VK Sharma, TP Srivastava, TD Taylor, H Noguchi, H Mori, Y Ogura, DS Ehrlich, K Itoh, T Takagi, Y Sakaki, T Hayashi, M Hattori
    posted to community_genomics by vrich on 2008-05-08 23:14:11 as ** along with 6 people FmuO bluto jmeppley wenhan carpi melissa_wos
  • Viral communities associated with healthy and bleaching corals
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Kristen L Marhaver, Robert A Edwards, Forest Rohwer
    posted to viral coral community_genomics by vrich on 2008-05-16 21:06:32 as **
  • Bacterial carbon processing by generalist species in the coastal ocean
    Nature (27 January 2008)
    by Xiaozhen Mou, Shulei Sun, Robert A Edwards, Robert E Hodson, Mary A Moran
    posted to sulfur doc dmsp community_genomics 454 by vrich on 2008-05-15 21:30:07 as ** along with 2 people and 1 group mjetten cmzmasek microbiology_nijmegen
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
    by J Handelsman
    posted to community_genomics by vrich on 2008-05-11 22:28:32 as ** along with 5 people and 2 groups djkt jlgreen orzenil mcox knaseanka iSEEM Green Lab
  • Phylogenetic classification of short environmental DNA fragments
    Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2230-2239.
    by Lutz Krause, Naryttza N Diaz, Alexander Goesmann, Scott Kelley, Tim W Nattkemper, Forest Rohwer, Robert A Edwards, Jens Stoye
    posted to taxonomy community_genomics 454 by vrich on 2008-05-09 00:04:42 as **
  • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    Nature, Vol. 440, No. 7085., pp. 790-794.
    by Marc Strous, Eric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valã©rie Barbe, Nuria Fonknechten, David Vallenet, Bã©atrice Segurens, Chantal Schenowitz-Truong, Claudine Mã©digue, Astrid Collingro, Berend Snel, Bas E Dutilh, Huub, Chris van der Drift, Irina Cirpus, Katinka T van de Pas-Schoonen, Harry R Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A Huynen, Hans-Werner Mewes, Jean Weissenbach, Mike SM Jetten, Michael Wagner, Denis Le Paslier
    posted to community_genomics anammox by vrich on 2008-05-16 15:25:50 as ** along with 2 people and 4 groups jlgreen kinestetika iSEEM Green Lab anammox microbiology_nijmegen
  • Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
    Environmental Microbiology, Vol. 9, No. 6. (June 2007), pp. 1464-1475.
    by Yutin, Natalya, Suzuki, T Marcelino, Teeling, Hanno, Weber, Marc, Venter, J Craig, Rusch, B Douglas, Beja, Oded
    posted to community_genomics aap by vrich on 2008-05-16 21:35:51 as ** along with 2 people and 2 groups jlgreen jmeppley iSEEM Green Lab
  • The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Shibu Yooseph, Granger Sutton, Douglas B B Rusch, Aaron L L Halpern, Shannon J J Williamson, Karin Remington, Jonathan A A Eisen, Karla B B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S Miller, Huiying Li, Susan T T Mashiyama, Marcin P P Joachimiak, Christopher van Belle, John-Marc M Chandonia, David A A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J Raphael, Vineet Bafna, Robert Friedman, Steven E E Brenner, Adam Godzik, David Eisenberg, Jack E E Dixon, Susan S S Taylor, Robert L L Strausberg, Marvin Frazier, J Craig C Venter
    posted to community_genomics by vrich on 2008-05-15 22:01:13 as ** along with 5 people and 4 groups jlgreen mjetten jmeppley kaspermunch michC iSEEM Green Lab microbiology_nijmegen Bioinformatics
  • The metagenomics of soil
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 470-478.
    by Rolf Daniel
    posted to community_genomics by vrich on 2008-05-09 00:02:55 as ** along with 3 people mcox johanviklund calamar
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to whale silage community_genomics by vrich on 2008-05-16 21:34:22 as ** along with 11 people and 4 groups djkt jlgreen mjetten sanchezbuelna mcox bluto jmeppley AaronDarling azazello wenhan sgoetz iSEEM Green Lab microbiology_nijmegen anammox
  • Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea.
    Environ Microbiol, Vol. 6, No. 9. (September 2004), pp. 970-980.
    by AH Treusch, A Kletzin, G Raddatz, T Ochsenreiter, A Quaiser, G Meurer, SC Schuster, C Schleper
    posted to fosmids community_genomics by vrich on 2008-05-08 22:42:22 as ** along with 2 people knaseanka johanviklund
  • Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms
    Appl. Environ. Microbiol., Vol. 66, No. 6. (1 June 2000), pp. 2541-2547.
    by Michelle R Rondon, Paul R August, Alan D Bettermann, Sean F Brady, Trudy H Grossman, Mark R Liles, Kara A Loiacono, Berkley A Lynch, Ian A Macneil, Charles Minor, Choi L Tiong, Michael Gilman, Marcia S Osburne, Jon Clardy, Jo Handelsman, Robert M Goodman
    posted to community_genomics 16srrna by vrich on 2008-05-09 00:00:38 as ** along with 5 people mcox jmeppley eweaver bluto dmlai
  • Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from metagenomics and environmental genomics
    Environmental Microbiology, Vol. 7, No. 12. (December 2005), pp. 2027-2033.
    by Natalya Yutin, Oded Beja
    posted to community_genomics aap by vrich on 2008-05-16 21:33:59 as ** along with 2 people and 1 group wxg119 beatrizfernandez Microbial-Ecology
  • Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    Appl. Environ. Microbiol. (7 September 2007), AEM.00358-07.
    by Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B Jackson
    posted to community_genomics 454 16srrna by vrich on 2008-05-11 22:42:32 as ** along with 2 people mellabee kerekesj
  • Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges
    Applied Microbiology and Biotechnology, Vol. 75, No. 1. (28 May 2007), pp. 11-20.
    by Jonathan Kennedy, Julian Marchesi, Alan Dobson
    posted to sponge ocean community_genomics biotech by vrich on 2008-05-16 21:31:43 as **
  • Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Linda Wegley, Robert Edwards, Beltran Rodriguez-Brito, Hong Liu, Forest Rohwer
    posted to community_genomics by vrich on 2008-05-16 20:56:59 as ** along with 2 people hpaces bluto
  • Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics
    Environmental Microbiology, Vol. 10, No. 6. (2008), pp. 1526-1535.
    by Josh D Neufeld, Yin Chen, Marc G Dumont, Colin J Murrell
    posted to sip mda community_genomics by vrich on 2008-05-09 15:52:25 as **
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