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Tag co-evolution [91 articles]

Recent papers classified by the tag co-evolution.
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-11-03 03:07:56 as **** along with 1 person cjeans
  • Coevolution of gene families in prokaryotes
    Genome Res., Vol. 18, No. 3. (1 March 2008), pp. 462-468.
    by Otto X Cordero, Berend Snel, Paulien Hogeweg
    posted to co-evolution genefamily prokaryote by zwang on 2008-03-03 04:30:21 as *** along with 2 people operon neils
  • The genetic basis of a plant insect coevolutionary key innovation
    Proceedings of the National Academy of Sciences (11 December 2007), 0706229104.
    by Christopher W Wheat, Heiko Vogel, Ute Wittstock, Michael F Braby, Dessie Underwood, Thomas Mitchell-Olds
    posted to co-evolution genetic by zwang on 2007-12-12 07:50:21 as **
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to co-evolution diversity interaction protein sequence by zwang on 2007-05-09 07:25:09 as **** along with 9 people and 2 groups stevanspringer bjorns cjeans Garamonfok cursonivel1 tale winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
  • Global diversity and evidence for coevolution of KIR and HLA
    Nature Genetics, Vol. 39, No. 9. (12 August 2007), pp. 1114-1119.
    by Richard M Single, Maureen P Martin, Xiaojiang Gao, Diogo Meyer, Meredith Yeager, Judith R Kidd, Kenneth K Kidd, Mary Carrington
    posted to co-evolution diversity by zwang on 2007-08-31 16:23:04 as **
  • The Origins of Specificity in Polyketide Synthase Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e186.
    by Mukund Thattai, Yoram Burak, Boris I Shraiman
    posted to co-evolution interaction protein by zwang on 2007-11-02 08:09:28 as *** along with 2 people phoenixzxl marck
  • Analysis on multi-domain cooperation for predicting protein-protein interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rui S Wang, Yong Wang, Ling Y Wu, Xiang S Zhang, Luonan Chen
    posted to co-evolution domain interaction prediction protein by zwang on 2007-10-22 01:55:10 as *** along with 2 people jyuh phoenixzxl
  • Interaction Intimacy Affects Structure and Coevolutionary Dynamics in Mutualistic Networks
    Current Biology, Vol. 17, No. 20. (23 October 2007), pp. 1797-1803.
    by Guimaraes, Victor Rico-Gray, Paulo S Oliveira, Thiago J Izzo, Dos, John N Thompson
    posted to co-evolution dynamics interaction network structure by zwang on 2007-10-25 08:06:40 as ***
  • Coevolution of a Homing Endonuclease and Its Host Target Sequence
    Journal of Molecular Biology, Vol. 372, No. 5. (5 October 2007), pp. 1305-1319.
    by Michelle Scalley-Kim, Audrey Mcconnell-Smith, Barry L Stoddard
    posted to co-evolution protein sequence by zwang on 2007-11-01 07:33:43 as **
  • Evolutionary Explanations for Cooperation
    Current Biology, Vol. 17, No. 16. (21 August 2007), pp. R661-R672.
    by Stuart A West, Ashleigh S Griffin, Andy Gardner
    posted to co-evolution evolution by zwang on 2007-08-25 03:57:39 as *** along with 2 people testa HugoMarcelo
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to co-evolution contact prediction structure substitution by zwang on 2008-03-20 13:25:08 as *** along with 3 people and 3 groups barry sobolevnrm Lombardo_7 structural_bioinformatics Bioinformatics baker-group
  • A Study of the Coevolutionary Patterns Operating within the env Gene of the HIV-1 Group M Subtypes
    Mol Biol Evol, Vol. 24, No. 12. (1 December 2007), pp. 2787-2801.
    by Simon A Travers, Damien C Tully, Grace P Mccormack, Mario A Fares
    posted to co-evolution virus by zwang on 2007-12-20 03:53:33 as ***
  • Co-evolution and co-adaptation in protein networks
    FEBS Letters, Vol. In Press, Uncorrected Proof
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to co-evolution network protein by zwang on 2008-02-22 13:06:04 as **** along with 2 people and 1 group phoenixzxl smgomez GomezLab
  • Detecting the Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e211.eor.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain protein by zwang on 2007-09-22 08:05:24 as ***
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
    posted to co-evolution epistasis evolution mutation protein structure by zwang on 2007-08-18 08:37:30 as *** along with 4 people and 1 group bicko dpollard csjonline ramensky EisenLab
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to co-evolution domain prediction protein by zwang on 2007-12-10 04:24:46 as ***** along with 11 people and 1 group balicea skhadar sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
  • Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
    Nature, Vol. 449, No. 7158., pp. 83-86.
    by Debbie Lindell, Jacob D Jaffe, Maureen L Coleman, Matthias E Futschik, Ilka M Axmann, Trent Rector, Gregory Kettler, Matthew B Sullivan, Robert Steen, Wolfgang R Hess, George M Church, Sallie W Chisholm
    posted to co-evolution genome-wide by zwang on 2007-09-06 15:07:45 as *** along with 2 people dayjm mellabee
  • Co-evolving residues in membrane proteins
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3312-3319.
    by Angelika Fuchs, Antonio J Martin-Galiano, Matan Kalman, Sarel Fleishman, Nir Ben-Tal, Dmitrij Frishman
    posted to co-evolution membrane protein residue by zwang on 2007-12-10 03:52:09 as *** along with 6 people and 2 groups operon breden cjeans blasco_morozzo phoenixzxl Lombardo_7 SFUAntibodyResearch signal-duplication
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to co-evolution interaction interface prediction structure by zwang on 2008-08-06 07:42:22 as *** along with 4 people cabbagesofdoom phoenixzxl bicko chad_davis
  • The coevolution of choosiness and cooperation
    Nature, Vol. 451, No. 7175. (10 January 2008), pp. 189-192.
    by John M Mcnamara, Zoltan Barta, Lutz Fromhage, Alasdair I Houston
    posted to co-evolution by zwang on 2008-01-10 01:40:09 as ** along with 3 people and 1 group gennaro adriandefroment jasonn LABSS
  • The co-evolutionary genetics of ecological communities
    Nature Reviews Genetics, Vol. 8, No. 3. (06 February 2007), pp. 185-195.
    by Michael J Wade
    posted to co-evolution ecology by zwang on 2007-03-19 13:38:29 as **** along with 2 people echinotrix kathrynmrobinson
  • Evolution of Speech and Its Acquisition
    Adaptive Behavior, Vol. 13, No. 4. (1 December 2005), pp. 281-292.
    by Bart de Boer
    posted to phonology co-evolution _d_simulation-evidence by voiklis on 2007-02-04 19:02:05 as *** along with 1 group ColDyn
  • Protein co-evolution, co-adaptation and interactions
    The EMBO Journal, Vol. aop, No. current. (25 September 2008)
    by Florencio Pazos, Alfonso Valencia
    posted to ppi co-evolution by sjcockell on 2008-09-29 19:52:14 as ** along with 1 person and 3 groups barry structural_bioinformatics McCammon Bioinformatics
  • Co-evolution in a Rugged Fitness Landscape
    by Baky Henrik
    posted to co-evolution rugged-surface by scis0000001 on 2006-09-04 15:05:15 as **
  • Co-evolution of Robot Behaviors
    by Robert Daley, Alan C Schultz, John J Grefenstette
    posted to behavior co-evolution by scis0000001 on 2006-09-15 20:44:53 as **
  • Bee-hawking by the wasp, Vespa velutina, on the honeybees Apis cerana and A. mellifera
    Naturwissenschaften (2007)
    by K Tan, SE Radloff, JJ Li, HR Hepburn, MX Yang, LJ Zhang, P Neumann
    posted to apis bee-hawking cerana co-evolution honeybees mellifera predation velutina vespula wasps by rastel on 2007-02-27 12:36:01 as **
  • Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution
    Genome Res. (21 November 2007), gr.6969007.
    by Xiangjun Du, Zhuo Wang, Aiping Wu, Lin Song, Yang Cao, Haiying Hang, Taijiao Jiang
    posted to co-evolution influenza by phoenixzxl on 2008-03-14 09:04:48 as ** along with 2 people tmmurali zwang
  • War is peace -- dispatches from the bacterial and phage killing fields
    Current Opinion in Microbiology, Vol. 8, No. 4. (August 2005), pp. 488-494.
    by Andre M Comeau, Henry M Krisch
    posted to co-evolution phage by mellabee on 2007-09-28 18:13:18 as *****
  • A comparison of evaluation methods in coevolution
    (2007), pp. 479-487.
    by Ting-Shuo Yo, Edwin D de Jong
    posted to evolutionary-computation evaluation coevolution co-evolution by mcphee on 2008-10-12 00:26:01 as ** along with 1 person jonana
  • Co-evolutionary modular neural networks for automatic problem decomposition
    Evolutionary Computation, 2005. The 2005 IEEE Congress on, Vol. 3 (2005), pp. 2691-2698 Vol. 3.
    by VR Khare, Xin Yao, B Sendhoff, Yaochu Jin, H Wersing
    posted to co-evolution evolution evolutionary-computation modularity neural-networks problem-decomposition by mcphee on 2008-02-04 14:38:03 as ***
  • Self-organizing behavior in a lattice model for co-evolution of virus and immune systems
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 75, No. 4. (2007)
    by Sh, Vl, VB Priezzhev, Chin K Hu
    posted to co-evolution immune lattice virus by malkocb on 2007-05-21 00:40:51 as ***
  • Effects of symbiotic evolution in genetic algorithms for job-shop scheduling
    System Sciences, 2001. Proceedings of the 34th Annual Hawaii International Conference on (2001), 6 pp..
    by Y Tsujimura, Y Mafune, M Gen
    posted to co-evolution jsp subevolution by jonana on 2007-10-22 17:33:54 as read
  • Monotonic solution concepts in coevolution
    (2005), pp. 499-506.
    by Sevan G Ficici
    posted to co-evolution solution_concept by jonana on 2008-04-11 15:09:00 as **
  • Finding Worst-Case Flexible Schedules using Coevolution
    (July-November 2001), pp. 1144-1151.
    by Mikkel T Jensen
    edited by Lee Spector, Erik D Goodman, Annie Wu, WB Langdon, Hans M Voigt, Mitsuo Gen, Sandip Sen, Marco Dorigo, Shahram Pezeshk, Max H Garzon, Edmund Burke
    posted to co-evolution jsp schedules worst-case by jonana on 2007-10-18 13:05:48 as read
  • Thoughts on solution concepts
    (2007), pp. 434-439.
    by Anthony Bucci, Jordan B Pollack
    posted to co-evolution solution_concept by jonana on 2007-12-17 14:16:59 as read
  • Ideal Evaluation from Coevolution
    Evol. Comput., Vol. 12, No. 2. (June 2004), pp. 159-192.
    by Edwin D de Jong, Jordan B Pollack
    posted to automatic-evaluation co-evolution ea underlying_objectives by jonana on 2007-10-22 17:19:33 as read
  • Coevolutionary Computation
    Artificial Life, Vol. 2, No. 4. (1995), pp. 355-375.
    by Jan Paredis
    posted to co-evolution by jonana on 2007-12-21 16:12:30 as read
  • Semantic Niching and Coevolution in Optimization Problems
    (1997)
    by Hugues Juille, Jordan B Pollack
    posted to co-evolution ea multi-objective by jonana on 2007-11-12 09:04:21 as read
  • A Model System for Coevolution: Avian Brood Parasitism
    Annual Review of Ecology and Systematics, Vol. 21 (November 1990), pp. 481-508.
    by Stephen I Rothstein
    posted to biologie co-evolution by jonana on 2008-04-03 18:12:38 as **
  • Introductory tutorial on coevolution
    (2007), pp. 3133-3157.
    by Edwin D de Jong, Kenneth O Stanley, Paul R Wiegand
    posted to co-evolution by jonana on 2007-11-28 10:50:59 as read along with 1 person cwr
  • A genetic algorithm for minimax optimization problems
    Evolutionary Computation, 1999. CEC 99. Proceedings of the 1999 Congress on, Vol. 2 (1999)
    by JW Herrmann
    posted to co-evolution jsp minimax worst-case by jonana on 2007-10-17 16:20:48 as read along with 1 person pverstra
  • Objective fitness correlation
    (2007), pp. 440-447.
    by Edwin D de Jong
    posted to co-evolution evaluation by jonana on 2007-11-30 15:40:02 as read along with 2 people mthomure cwr
  • Understanding cooperative co-evolutionary dynamics via simple fitness landscapes
    (2005), pp. 507-514.
    by Elena Popovici, Kenneth De Jong
    posted to co-evolution by jonana on 2007-10-22 17:21:19 as ** along with 1 person mthomure
  • The Incremental Pareto-Coevolution Archive
    (2004)
    by E de Jong
    posted to archive co-evolution by jonana on 2007-11-30 17:18:58 as ****
  • When coevolutionary algorithms exhibit evolutionary dynamics
    (2002)
    by S Luke, R Wiegand
    posted to co-evolution fitness obj_vs_subj by jonana on 2007-11-29 09:19:12 as read
  • Introducing co-evolution and sub-evolution processes into genetic algorithm for job-shop scheduling
    Industrial Electronics Society, 2000. IECON 2000. 26th Annual Confjerence of the IEEE, Vol. 4 (2000), pp. 2827-2830 vol.4.
    by Y Tsujimura, Y Mafune, M Gen
    posted to co-evolution ea jsp by jonana on 2007-10-22 17:36:12 as **
  • Escalation of a coevolutionary arms race through host rejection of brood parasitic young
    Nature, Vol. 422 (March 2003), pp. 157-160.
    by NE Langmore, S Hunt, RM Kilner
    posted to arms-race biologie co-evolution by jonana on 2007-12-06 09:55:08 as **
  • Co-evolving parasites improve simulated evolution as an optimization procedure
    (1990), pp. 228-234.
    by Daniel W Hillis
    posted to co-evolution by jonana on 2007-12-17 14:19:07 as **** along with 2 people mthomure cwr
  • Advanced tutorial on coevolution
    (2007), pp. 3172-3204.
    by Sevan G Ficici, Anthony Bucci
    posted to co-evolution by jonana on 2007-11-28 10:49:07 as read along with 1 person cwr
  • A new look at solving minimax problems with coevolutionary genetic algorithms
    Vol. 86 (2004), pp. 369-384.
    by Mikkel T Jensen
    edited by Mauricio GC Resende, Jorge P de Sousa, Ana Viana
    posted to co-evolution ea minimax by jonana on 2007-10-22 17:27:14 as read
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