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Tag cnv [176 articles]

Recent papers classified by the tag cnv.
  • Structural variation in the human genome: the impact of copy number variants on clinical diagnosis.
    Genetics in medicine : official journal of the American College of Medical Genetics, Vol. 9, No. 9. (September 2007), pp. 600-606.
    posted to review genomics cnv by Zephyrus on 2008-07-21 00:56:10 as **
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
  • Germ-line DNA copy number variation frequencies in a large North American population.
    Hum Genet (19 July 2007)
    by George Zogopoulos, Kevin C Ha, Faisal Naqib, Sara Moore, Hyeja Kim, Alexandre Montpetit, Frederick Robidoux, Philippe Laflamme, Michelle Cotterchio, Celia Greenwood, Stephen W Scherer, Brent Zanke, Thomas J Hudson, Gary D Bader, Steven Gallinger
    posted to cnv by xingxu on 2007-08-01 22:26:18 as ***** along with 1 person bpb
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
  • Genome-wide characterization of gene expression variations and DNA copy number changes in prostate cancer cell lines
    The Prostate, Vol. 63, No. 2. (2005), pp. 187-197.
    by Hongjuan Zhao, Young Kim, Pei Wang, Jacques Lapointe, Rob Tibshirani, Jonathan R Pollack, James D Brooks
    posted to cancer cnv cell-lines prostate by xingxu on 2007-11-16 19:24:13 as **
  • Evidence for an influence of chemokine ligand 3-like 1 (CCL3L1) gene copy number on susceptibility to rheumatoid arthritis
    Ann Rheum Dis (29 June 2007), ard.2007.075028.
    by Cushla Mckinney, Marilyn E Merriman, Peter T Chapman, Peter J Gow, Andrew A Harrison, John Highton, Peter BB Jones, Lachy Mclean, John L O'Donnell, Violetta Pokorny, Myfanwy Spellerberg, Lisa Stamp, Jinny Willis, Sophia Steer, Tony Merriman
    posted to chemokine cnv rheumatoid_athritis by xingxu on 2007-12-12 20:01:41 as **
  • Integrative analysis of genomic aberrations associated with prostate cancer progression.
    Cancer Res, Vol. 67, No. 17. (1 September 2007), pp. 8229-8239.
    by JH Kim, SM Dhanasekaran, R Mehra, SA Tomlins, W Gu, J Yu, C Kumar-Sinha, X Cao, A Dash, L Wang, D Ghosh, K Shedden, JE Montie, MA Rubin, KJ Pienta, RB Shah, AM Chinnaiyan
    posted to cancer cnv prostate by xingxu on 2007-11-16 18:30:18 as read along with 1 person rdiaz
  • Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array
    Human Mutation, Vol. 9999, No. 9999. (2007), n/a.
    by Teresita D de Ståhl, Johanna Sandgren, Arkadiusz Piotrowski, Helena Nord, Robin Andersson, Uwe Menzel, Adam Bogdan, Ann-Charlotte Thuresson, Andrzej Poplawski, Desiree von Tell, Caisa M Hansson, Amir I Elshafie, Gehad Elghazali, Stephan Imreh, Magnus Nordenskjöld, Meena Upadhyaya, Jan Komorowski, Carl EG Bruder, Jan P Dumanski
    posted to cnv variation by wook on 2007-12-17 09:33:11 as ***
  • Copy Number Variation Detection via High-Density SNP Genotyping
    Cold Spring Harbor Protocols, Vol. 2008, No. 7. (1 June 2008), pdb.top46.
    by Kai Wang, Maja Bucan
    posted to snp genotyping cnv by waszak on 2008-07-19 22:21:28 as **
  • Hidden copy number variation in the HapMap population.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 10067-10072.
    by JC Marioni, M White, S Tavaré, AG Lynch
    posted to hapmap cnv by waszak on 2008-07-24 10:09:47 as ** along with 2 people Stew jyuh
  • Copy number polymorphism in fcgr3 predisposes to glomerulonephritis in rats and humans
    Nature, Vol. 439, No. 7078., pp. 851-855.
    by Timothy J Aitman, Rong Dong, Timothy J Vyse, Penny J Norsworthy, Michelle D Johnson, Jennifer Smith, Jonathan Mangion, Cheri Roberton-Lowe, Amy J Marshall, Enrico Petretto, Matthew D Hodges, Gurjeet Bhangal, Sheetal G Patel, Kelly Sheehan-Rooney, Mark Duda, Paul R Cook, David J Evans, Jan Domin, Jonathan Flint, Joseph J Boyle, Charles D Pusey, Terence H Cook
  • FCGR3B copy number variation is associated with susceptibility to systemic, but not organ-specific, autoimmunity
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 721-723.
    by Manuela Fanciulli, Penny J Norsworthy, Enrico Petretto, Rong Dong, Lorraine Harper, Lavanya Kamesh, Joanne M Heward, Stephen CL Gough, Adam de Smith, Alexandra IF Blakemore, Philippe Froguel, Catherine J Owen, Simon HS Pearce, Luis Teixeira, Loic Guillevin, Deborah, Charles D Pusey, Terence H Cook, Timothy J Vyse, Timothy J Aitman
    posted to association cnv fcgr3b by vplagnol on 2007-09-09 11:32:09 as **
  • The Influence of CCL3L1 Gene-Containing Segmental Duplications on HIV-1/AIDS Susceptibility
    Science, Vol. 307, No. 5714. (04 March 2005), pp. 1434-1440.
    by Enrique Gonzalez, Hemant Kulkarni, Hector Bolivar, Andrea Mangano, Racquel Sanchez, Gabriel Catano, Robert J Nibbs, Barry I Freedman, Marlon P Quinones, Michael J Bamshad, Krishna K Murthy, Brad H Rovin, William Bradley, Robert A Clark, Stephanie A Anderson, Robert J O'Connell, Brian K Agan, Seema S Ahuja, Rosa Bologna, Luisa Sen, Matthew J Dolan, Sunil K Ahuja
    posted to ccl3l1 cnv by vplagnol on 2008-01-20 21:47:05 as ** along with 2 people mercaptan tkershaw
  • Copy number of FCGR3B, which is associated with systemic lupus erythematosus, correlates with protein expression and immune complex uptake
    J. Exp. Med., Vol. 205, No. 7. (7 July 2008), pp. 1573-1582.
    by Lisa C Willcocks, Paul A Lyons, Menna R Clatworthy, James I Robinson, Wanling Yang, Stephen A Newland, Vincent Plagnol, Naomi N Mcgovern, Alison M Condliffe, Edwin R Chilvers, Dwomoa Adu, Elaine C Jolly, Richard Watts, Yu L Lau, Ann W Morgan, Gerard Nash, Kenneth G Smith
    posted to sle fcgr3b fcgr cnv by vplagnol on 2008-08-02 10:08:36 as **
  • Psoriasis is associated with increased beta-defensin genomic copy number.
    Nat Genet, Vol. 40 (2 December 2007), pp. 23-25.
    by Edward JJ Hollox, Ulrike Huffmeier, Patrick LJML Zeeuwen, Raquel Palla, Jesús Lascorz, Diana Rodijk-Olthuis, Peter CMC van de Kerkhof, Heiko Traupe, Gys de Jongh, Martin, André Reis, John ALA Armour, Joost Schalkwijk
    posted to psoriasis cnv association by vplagnol on 2008-06-10 11:55:49 as ** along with 2 people bootsy caseybrown
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191. (2008), pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • Inhibition of platelet-derived growth factor B signaling enhances the efficacy of anti-vascular endothelial growth factor therapy in multiple models of ocular neovascularization.
    Am J Pathol, Vol. 168, No. 6. (June 2006), pp. 2036-2053.
    by N Jo, C Mailhos, M Ju, E Cheung, J Bradley, K Nishijima, GS Robinson, AP Adamis, DT Shima
    posted to cnv pdgf by stevezhang on 2008-03-21 21:01:56 as **
  • EIAV vector-mediated delivery of endostatin or angiostatin inhibits angiogenesis and vascular hyperpermeability in experimental CNV
    Gene Therapy, Vol. aop, No. current.
    by KS Balaggan, K Binley, M Esapa, RE Maclaren, S Iqball, Y Duran, RA Pearson, O Kan, SE Barker, AJ Smith, JWB Bainbridge, S Naylor, RR Ali, ,
    posted to amd cnv lenti by stevezhang on 2006-04-05 18:24:58 as *** along with 1 group SGMO_ZFP
  • Carboxyethylpyrrole oxidative protein modifications stimulate neovascularization: Implications for age-related macular degeneration.
    Proc Natl Acad Sci U S A, Vol. 103, No. 36. (5 September 2006), pp. 13480-13484.
    by Q Ebrahem, K Renganathan, J Sears, A Vasanji, X Gu, L Lu, RG Salomon, JW Crabb, B Anand-Apte
    posted to amd cnv by stevezhang on 2008-03-21 20:11:46 as **
  • Placental growth factor, a member of the VEGF family, contributes to the development of choroidal neovascularization.
    Invest Ophthalmol Vis Sci, Vol. 44, No. 7. (July 2003), pp. 3186-3193.
    by JM Rakic, V Lambert, L Devy, A Luttun, P Carmeliet, C Claes, L Nguyen, JM Foidart, A Noël, C Munaut
    posted to amd cnv plgf vegf by stevezhang on 2008-03-21 19:14:18 as **
  • Intraocular expression of endostatin reduces VEGF-induced retinal vascular permeability, neovascularization, and retinal detachment.
    FASEB J, Vol. 17, No. 8. (May 2003), pp. 896-898.
    by K Takahashi, Y Saishin, Y Saishin, RL Silva, Y Oshima, S Oshima, M Melia, B Paszkiet, D Zerby, MJ Kadan, G Liau, M Kaleko, S Connelly, T Luo, PA Campochiaro
    posted to antivasopermeability cnv vegf by stevezhang on 2006-04-18 23:16:49 as ** along with 1 group SGMO_ZFP
  • Growth factors in age-related macular degeneration: pathogenic and therapeutic implications.
    Ophthalmic Res, Vol. 29, No. 5. (1997), pp. 341-353.
    by RN Frank
    posted to amd cnv fgf vegf by stevezhang on 2006-10-29 08:39:20 as ** along with 1 group SGMO_ZFP
  • Expression of FGF5 in choroidal neovascular membranes associated with ARMD.
    Curr Eye Res, Vol. 16, No. 4. (April 1997), pp. 396-399.
    posted to amd cnv fgf vegf by stevezhang on 2006-10-29 08:38:26 as ** along with 1 group SGMO_ZFP
  • Insulin-like growth factor-I and its receptor in neovascular age-related macular degeneration.
    Invest Ophthalmol Vis Sci, Vol. 44, No. 5. (May 2003), pp. 2192-2198.
    posted to amd cnv igf by stevezhang on 2008-03-21 17:24:49 as **
  • Insulin-like growth factor-1 contributes to neovascularization in age-related macular degeneration.
    Biochem Biophys Res Commun, Vol. 323, No. 4. (29 October 2004), pp. 1203-1208.
    posted to amd cnv igf by stevezhang on 2008-03-21 17:21:45 as **
  • Spectral characteristics and linearnonlinear synchronization changes of different EEG frequency bands during the CNV
    Psychophysiology, Vol. 45, No. 3. (May 2008), pp. 412-419.
    posted to beta cnv eeg spectral by sherdim on 2008-04-15 12:37:16 as *****
  • Contributions from eye movement potentials to stimulus preceding negativity during anticipation of auditory stimulation
    Psychophysiology, Vol. 44, No. 6. (November 2007), pp. 918-926.
    by Lis Engdahl, Vicky K Bjerre, Gert R Christoffersen
  • Varieties of attention in neutral trials: Linking RT to ERPs and EEG frequencies
    Psychophysiology, Vol. 43, No. 1. (January 2006), pp. 113-125.
    by Ellen M Jongen, Fren T Smulders, Gerard J Breukelen
  • Response Anticipation and Response Conflict: An Event-Related Potential and Functional Magnetic Resonance Imaging Study
    J. Neurosci., Vol. 27, No. 9. (28 February 2007), pp. 2272-2282.
    by Jin Fan, Rachel Kolster, Jamshid Ghajar, Minah Suh, Robert T Knight, Ranjeeta Sarkar, Bruce D Mccandliss
  • Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 319-326.
    posted to snp cnv bioinformatics by Schmidtc on 2008-06-04 02:04:53 as ** along with 1 group Bioinformatics
  • An evolution revolution provides further revelation.
    Bioessays, Vol. 29, No. 12. (15 November 2007), pp. 1182-1184.
    by James RR Lupski
  • Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability
    Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646.
    by Jacques S Beckmann, Xavier Estivill, Stylianos E Antonarakis
    posted to cnv review by ryanraaum on 2007-07-18 13:37:21 as ** along with 1 person and 1 group rdiaz Bioinformatics
  • Visual cortex: the continuing puzzle of area V2.
    Curr Biol, Vol. 14, No. 13. (13 July 2004)
    by GM Boynton, J Hegdé
    posted to cnv v2 by rwilliamson on 2007-03-30 11:20:41 as read
  • Representation of Angles Embedded within Contour Stimuli in Area V2 of Macaque Monkeys
    J. Neurosci., Vol. 24, No. 13. (31 March 2004), pp. 3313-3324.
    by Minami Ito, Hidehiko Komatsu
  • Cooperative self-organization of afferent and lateral connections in cortical maps
    Biological Cybernetics, Vol. V71, No. 1. (7 May 1994), pp. 65-78.
    by Joseph Sirosh, Risto Miikkulainen
    posted to cnv mscproject by rwilliamson on 2007-03-19 09:43:05 as read
  • Analysis of segmental duplications and genome assembly in the mouse.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 789-801.
    by JA Bailey, DM Church, M Ventura, M Rocchi, EE Eichler
    posted to cnv gru segdups by pcahan1 on 2006-09-08 14:00:59 as **
  • Recent segmental and gene duplications in the mouse genome.
    Genome Biol, Vol. 4, No. 8. (2003)
    by J Cheung, MD Wilson, J Zhang, R Khaja, JR MacDonald, HH Heng, BF Koop, SW Scherer
    posted to cnv gru segdups by pcahan1 on 2006-09-08 14:00:36 as ** along with 1 person miguel
  • Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.
    Hum Mol Genet, Vol. 12, No. 17. (1 September 2003), pp. 2201-2208.
    posted to cnv gru segdups by pcahan1 on 2006-09-08 14:00:01 as **
  • Murine segmental duplications are hot spots for chromosome and gene evolution.
    Genomics, Vol. 86, No. 6. (December 2005), pp. 692-700.
    posted to cnv gru segdups by pcahan1 on 2006-09-08 13:58:59 as **
  • Molecular mechanisms for genomic disorders.
    Annu Rev Genomics Hum Genet, Vol. 3 (2002), pp. 199-242.
    by K Inoue, JR Lupski
    posted to cnv gru by pcahan1 on 2006-09-08 13:52:56 as ***
  • Bayesian Methods for Hidden Markov Models: Recursive Computing in the 21st Century
    Journal of the American Statistical Association, Vol. 97, No. 457. (2002), pp. 337-??.
    by Steven L Scott
    posted to cnv by oliver4242 on 2008-06-27 09:12:15 as **
  • Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation.
    Genome Res, Vol. 13, No. 10. (October 2003), pp. 2291-2305.
    by R Lucito, J Healy, J Alexander, A Reiner, D Esposito, M Chi, L Rodgers, A Brady, J Sebat, J Troge, JA West, S Rostan, KC Nguyen, S Powers, KQ Ye, A Olshen, E Venkatraman, L Norton, M Wigler
    posted to cnv roma by oilcan on 2007-04-23 15:43:12 as **** along with 3 people joule rdiaz bioguru2000
  • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    Proceedings of the National Academy of Sciences (6 December 2007), 0710052104.
    by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C Lee, Julie H Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M Debiasi, Francesca Demichelis, Charlie Hatton, Mark A Rubin, Levi A Garraway, Stan F Nelson, Linda Liau, Mischel, Tim F Cloughesy, Matthew Meyerson, Todd A Golub, Eric S Lander, Ingo K Mellinghoff, William R Sellers
  • Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome
    Proceedings of the National Academy of Sciences, Vol. 104, No. 24. (12 June 2007), pp. 10110-10115.
    by Jan O Korbel, Alexander E Urban, Fabian Grubert, Jiang Du, Thomas E Royce, Peter Starr, Guoneng Zhong, Beverly S Emanuel, Sherman M Weissman, Michael Snyder, Mark B Gerstein
    posted to breakpoints cnv human_genome by oelemento on 2007-11-16 06:08:27 as ** along with 1 person caldavis
  • Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome.
    Am J Hum Genet, Vol. 79, No. 2. (August 2006), pp. 275-290.
    by DP Locke, AJ Sharp, SA McCarroll, SD McGrath, TL Newman, Z Cheng, S Schwartz, DG Albertson, D Pinkel, DM Altshuler, EE Eichler
    posted to cnv heritability human linkage by lp2 on 2008-03-25 10:24:45 as **
  • Gene copy number variation spanning 60 million years of human and primate evolution.
    Genome Res (31 July 2007)
    by Laura Dumas, Young H H Kim, Anis Karimpour-Fard, Michael Cox, Janet Hopkins, Jonathan R R Pollack, James M M Sikela
  • Detection of DNA copy number alterations using penalized least squares regression
    Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3811-3817.
    by Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao
    posted to calculation cnv fdr by lh1 on 2008-01-04 11:30:08 as **
  • Integrated high-resolution genome-wide analysis of gene dosage and gene expression in human brain tumors.
    Methods Mol Biol, Vol. 377 (2007), pp. 187-202.
    by D Juric, C Bredel, BI Sikic, M Bredel
    posted to cnv expression integrated by lh1 on 2007-10-22 19:52:16 as **
  • Integrated analysis of expression and genome alteration reveals putative amplified target genes in esophageal cancer.
    Oncol Rep, Vol. 18, No. 2. (August 2007), pp. 465-472.
    by T Sugimoto, M Arai, H Shimada, A Hata, N Seki
    posted to analysis cnv expression integrated by lh1 on 2007-10-22 19:40:09 as **
  • MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1645-1646.
    by M Kato, Y Nakamura, T Tsunoda
    posted to software haplotype cnv by jyuh on 2008-07-25 08:36:38 as **
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