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Tag clustering [843 articles]

Recent papers classified by the tag clustering.
  • Biclustering As A Method For RNA Local Multiple Sequence Alignment
    Bioinformatics (6 October 2007), btm485.
    by Shu Wang, Robin R Gutell, Daniel P Miranker
    posted to alignment clustering rna sequence by zwang on 2007-12-10 03:49:41 as ** along with 1 person cjeans
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to protein interaction clustering by zwang on 2008-06-27 03:43:26 as ** along with 2 people grahamc chad_davis
  • Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data
    PLoS ONE, Vol. 3, No. 5. (21 May 2008), e2247.
    by Roy Varshavsky, David Horn, Michal Linial
    posted to hierarchical clustering by zwang on 2008-06-16 03:50:35 as ***
  • Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e65.
    by Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen
    posted to clustering ncrna by zwang on 2007-04-28 12:38:03 as * along with 5 people and 2 groups indigoviolet andersbj mtagaya stajich jayster4 EisenLab microRNA
  • Genetic Association Mapping via Evolution-Based Clustering of Haplotypes
    PLoS Genetics, Vol. 3, No. 7. (1 July 2007), e111.
    by Ioanna Tachmazidou, Claudio J Verzilli, Maria D Iorio
    posted to clustering evolution genetic by zwang on 2007-08-29 02:22:31 as ** along with 2 people xingxu dmc
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to clustering dna motif by zwang on 2007-04-19 15:10:17 as * along with 4 people pradiptaray aalibes nklee heliopais
  • Clustering by common friends finds locally significant proteins mediating modules
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131.
    by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder
    posted to clustering protein by zwang on 2007-05-10 02:07:20 as *
  • Extracting the hierarchical organization of complex systems
    Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15224-15229.
    by Marta Sales-Pardo, Roger Guimera, Andre A Moreira, Luis A Amaral
    posted to clustering complex hierarchical network by zwang on 2007-11-01 07:31:45 as ** along with 5 people and 1 group studentx jfr sobolevnrm niallhaslam arasbm baker-group
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to clustering gene human metabolism pathway by zwang on 2008-03-27 05:07:04 as ** along with 5 people and 1 group shikin jyuh caseybrown aubinhon ptrobajo Integrative_biology_behavior
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to clustering genome motif prediction yeast by zwang on 2007-11-01 02:15:02 as *** along with 12 people and 2 groups ana brant cwbrown aswin cjeans cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to cancer clustering network by zwang on 2007-10-17 01:53:38 as *** along with 14 people and 2 groups saman_vp verdicchio jfr kengg frohike mikaelhuss cjeans cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment clustering rna structure by zwang on 2007-05-01 06:10:22 as ** along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne ilh dunnp zhouyu BioinfoCIPF SGU-CIPF
  • A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 801-806.
    by Siobhan M Brady, David A Orlando, Ji-Young Lee, Jean Y Wang, Jeremy Koch, Jose R Dinneny, Daniel Mace, Uwe Ohler, Philip N Benfey
    posted to clustering expression fluorescent microarray by zwang on 2007-11-05 14:32:26 as * along with 2 people kengg cjeans
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to clustering experiment pathway regulatory by zwang on 2007-10-22 07:22:15 as **
  • Using Ontology in Hierarchical Information Clustering
    (2005)
    by Travis D Breaux, Joel W Reed
    posted to classification clustering ontology by zpinhead on 2007-06-26 22:07:50 as ** along with 2 people ianturton AlisonBabeu
  • Social and temporal structures in everyday collaboration
    (2004), pp. 551-558.
    by Danyel Fisher, Paul Dourish
    posted to clustering collaborative communication social_networks by zpinhead on 2008-03-01 18:18:09 as ** along with 6 people and 2 groups serol1971 zephoria indratmo locatellimp madeoutofpeople marcela digital_youth SocialMedia
  • A framework for statistical clustering with constant time approximation algorithms for K-median and K-means clustering
    Machine Learning
    by Shai Ben-David
    posted to clustering k-means k-median by zoop on 2006-12-06 21:31:42 as *** along with 2 people noa amoswish
  • Clustering using a random-walk based distance measure
    (2005)
    by L Yen, L Vanvyve, D Wouters, F Fouss, F Verleysen, M Saerens
    posted to clustering stochastic by zgecko on 2007-03-01 22:25:03 as *** along with 1 person jiria
  • Clustering Binary Data Streams with K-means
    (2003)
    by C Ordonez
    posted to clustering by zador on 2007-10-16 14:34:24 as **
  • Fast and Effective Text Mining Using Linear-Time Document Clustering
    (1999), pp. 16-22.
    by Bjornar Larsen, Chinatsu Aone
    posted to clustering by zador on 2007-10-16 09:17:02 as ** along with 1 person MMS1980
  • Fast and effective text mining using linear-time document clustering
    (1999), pp. 16-22.
    by Bjornar Larsen, Chinatsu Aone
    posted to clustering by zador on 2007-10-16 09:16:12 as ** along with 2 people archroad mkolar
  • Scaling Clustering Algorithms to Large Databases
    (1998), pp. 9-15.
    by Paul S Bradley, Usama M Fayyad, Cory Reina
    posted to clustering by zador on 2007-10-16 08:59:11 as ** along with 5 people burtonwu radical anon_pl dimatura JennyClar
  • Fast, single-pass K-means algorithms
    by Fredrik F Computer
    posted to clustering by zador on 2007-10-16 08:59:00 as **
  • Learning the k in kmeans
    (2003)
    by G Hamerly, C Elkan
    posted to clustering by zador on 2007-10-16 08:58:49 as **
  • Scalability for Clustering Algorithms Revisited
    SIGKDD Explorations, Vol. 2, No. 1. (2000), pp. 51-57.
    by Fredrik Farnstrom, James Lewis, Charles Elkan
    posted to clustering by zador on 2007-10-16 08:58:36 as **
  • A comparison of document clustering techniques
    (2000)
    by M Steinbach, G Karypis, V Kumar
    posted to clustering by zador on 2007-10-16 08:58:22 as ** along with 22 people and 3 groups iraklis pdlug creswick mapio jrsinclair harperf mrkrause sjelsaes sterovetta taho bundschu vikx01 julianpan Jessie mkolar annah AlisonBabeu mauricem imrchen markymaypo clickstone arasbm GroupLens ARTFL WebMining
  • Combined evidence annotation of transposable elements in genome sequences.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, M Ashburner, D Anxolabehere
    posted to blaster clustering grouper te by yoanjacquemin on 2008-01-15 16:07:37 as read along with 7 people and 1 group briann aprasad dpollard timflutre stajich urgi ArtemPankin EisenLab
  • Automated de novo identification of repeat sequence families in sequenced genomes.
    Genome Res, Vol. 12, No. 8. (August 2002), pp. 1269-1276.
    by Z Bao, SR Eddy
    posted to 213 alignment cited clustering multiplealign recon te by yoanjacquemin on 2008-01-15 15:47:59 as read along with 5 people Neeperando aprasad timflutre Jporci urgi
  • A clustering method for repeat analysis in DNA sequences
    Genome Biology, Vol. 2, No. 8. (2001), pp. research0027.1-research0027.11.
    by Natalia Volfovsky, Brian Haas, Steven Salzberg
    posted to clustering denovo detection merging mummer te by yoanjacquemin on 2008-01-15 08:30:32 as read
  • Survey of Human Genes of Retroviral Origin: Identification and Transcriptome of the Genes with Coding Capacity for Complete Envelope Proteins
    J. Virol., Vol. 77, No. 19. (1 October 2003), pp. 10414-10422.
    by Nathalie de Parseval, Vladimir Lazar, Jean-Francois Casella, Laurence Benit, Thierry Heidmann
    posted to clustering herv te by yoanjacquemin on 2008-01-16 10:24:02 as read along with 1 group BergmanLab
  • Identification and Characterization of Novel Human Endogenous Retrovirus Families by Phylogenetic Screening of the Human Genome Mapping Project Database
    J. Virol., Vol. 74, No. 8. (15 April 2000), pp. 3715-3730.
    by Michael Tristem
    posted to clustering herv intro te by yoanjacquemin on 2008-01-16 10:22:00 as read
  • De novo identification of repeat families in large genomes
    (June 2005)
    by Alkes L Price
    posted to clustering k-mer repeatscout te by yoanjacquemin on 2008-01-17 12:57:22 as read
  • ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
    PLoS Computational Biology, Vol. 1, No. 4. (1 September 2005), e43.
    by Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane K Wong, Jun Wang
    posted to clustering k-mer te by yoanjacquemin on 2008-01-17 12:54:52 as read along with 1 person timflutre
  • WindowMasker: window-based masker for sequenced genomes
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 134-141.
    by Aleksandr Morgulis, Michael E Gertz, Alejandro A Schaffer, Richa Agarwala
    posted to clustering k-mer te by yoanjacquemin on 2008-01-17 12:53:47 as read
  • PILER: identification and classification of genomic repeats.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by RC Edgar, EW Myers
    posted to clustering completecopies singlelink te by yoanjacquemin on 2008-01-17 12:52:14 as * along with 4 people treangen jackjackjjj timflutre urgi
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to clustering graph repeatgluer te by yoanjacquemin on 2008-01-17 12:51:04 as * along with 11 people Ema Neeperando brl briann operon timflutre azazello prajlondhe nedwards urgi dmc
  • Scatter/Gather: A Cluster-based Approach to Browsing Large Document Collections
    (1992), pp. 318-329.
    by Douglass R Cutting, Jan O Pedersen, David Karger, John W Tukey
    posted to buckshot clustering unsupervised word-sense-discrimination by ykuoka on 2008-01-15 09:19:23 as ** along with 9 people and 1 group radical jelsas indratmo taho vikx01 ible rabio matwendt koles VivesMinions
  • Cluster Analysis
    (04 March 1993)
    by Brian S Everitt
    posted to clustering textbook by ykuoka on 2008-01-12 07:41:43 as **
  • Word Sense Discrimination by Clustering Contexts in Vector and Similarity Spaces
    (2004), pp. 41-48.
    by Amruta Purandare, Ted Pedersen
    posted to clustering unsupervised word-sense word-sense-discrimination by ykuoka on 2008-01-14 12:03:34 as **
  • Automatic recognition of verbal polysemy
    (1994)
    by Fumiyo Fukumoto, Jun'ichi Tsujii
    posted to clustering hierarchical number-of-clusters by ykuoka on 2008-01-09 14:35:43 as **
  • Cluster Analysis
    (01 May 2001)
    by Brian S Everitt, Sabine Landau, Morven Leese
    posted to clustering by ykuoka on 2008-01-09 14:04:02 as ** along with 4 people quianominorleo lwilliams ingo burtonwu
  • Maximum Likelihood from Incomplete Data via the EM Algorithm
    Journal of the Royal Statistical Society. Series B (Methodological), Vol. 39, No. 1. (1977), pp. 1-38.
    by AP Dempster, NM Laird, DB Rubin
    posted to clustering k-means unsupervised by ykuoka on 2008-01-09 13:57:51 as ** along with 43 people and 8 groups iansimon qwermish wenhan eegilbert weymouth jake ingo anoopsarkar gangli rpadams wkw hoangmtbk dragonrez Freyr lukec dheena songhaoyuan amirsaemi j3xucite ecome walkking nandan marrtin tvdbulck MichaelDonoser MikeDoni rwilliamson calamar qq987 ichbins81 petrposik ggorjan shiquanwang lcigler ciga kvorg ifejobi DavidSchulz singhsh trop_wizz eddymier schulz stkhu MBLAB Statistics_and_Social_Science tulip LTN Computer_Graphics Computational_Information_Geometry csb_journal_club_public Medical Image Analysis and Visualization @ OSU
  • Word Sense Induction: Triplet-Based Clustering and Automatic Evaluation
    (2006)
    by Stefan Bordag
    posted to clustering unsupervised word-sense by ykuoka on 2008-01-09 13:44:43 as ** along with 2 people scis0000001 erikv
  • Concept Decompositions for Large Sparse Text Data Using Clustering
    Machine Learning, Vol. V42, No. 1. (1 January 2001), pp. 143-175.
    by Inderjit S Dhillon, Dharmendra S Modha
    posted to clustering k-means spherical by ykuoka on 2008-01-09 13:26:22 as *
  • Automatic Word Sense Discrimination
    Computational Linguistics, Vol. 24, No. 1. (1998), pp. 97-123.
    by Hinrich Schutze
    posted to clustering unsupervised word-sense by ykuoka on 2008-01-09 13:20:53 as read along with 4 people rbrixtel ianturton brightbyte spinaltap526
  • Automatic cluster stopping with criterion functions and the gap statistic
    (2006), pp. 276-279.
    by Ted Pedersen, Anagha Kulkarni
    posted to clustering number-of-clusters unsupervised by ykuoka on 2008-01-09 13:07:57 as read
  • Probabilistic latent semantic indexing
    (1999), pp. 50-57.
    by Thomas Hofmann
    posted to clustering plsi unsupervised word-sense by ykuoka on 2008-01-09 13:02:25 as ** along with 13 people and 2 groups ejmeij geomblog jelsas adg creswick bfraser danieltruemper shilad Phanix xiaoyan2006 fwkroon josepe abellogin GroupLens VT_DLRL
  • The Principal Components Analysis of a Graph, and its Relationships to Spectral Clustering
    by Marco S Francois
    posted to clustering spectral by yinghua77 on 2006-10-09 00:48:01 as ** along with 9 people and 1 group mamader rchauhan kevynct xtizon AbnerCYH sugarexpletive jiria ehohman pprett CSBBGraphTheory
  • Empirical and Theoretical Comparisons of Selected Criterion Functions for Document Clustering
    Mach. Learn., Vol. 55, No. 3. (June 2004), pp. 311-331.
    by Ying Zhao, George Karypis
    posted to clustering by yas on 2006-02-14 17:09:23 as ** along with 1 group T_lab
  • Clustering Aggregation
    (2005), pp. 341-352.
    by Aristides Gionis, Heikki Mannila, Panayiotis Tsaparas
    posted to aggregation clustering by yas on 2005-09-22 10:13:54 as ** along with 2 people and 1 group ajay81 anon_pl T_lab
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