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Tag bioinformatics [914 articles]

Recent papers classified by the tag bioinformatics.
  • Evolving research trends in bioinformatics.
    Brief Bioinform (31 October 2006)
    by Carolina Perez-Iratxeta, Miguel A A Andrade-Navarro, Jonathan D D Wren
    posted to bioinformatics evolution by zwang on 2007-04-24 15:49:38 as ** along with 3 people gpalidwor jdiezperezj waraz
  • Bayesian methods in bioinformatics and computational systems biology.
    Brief Bioinform (12 April 2007)
    by Darren J J Wilkinson
    posted to bayesian bioinformatics by zwang on 2007-04-24 15:48:13 as ** along with 14 people and 1 group quianominorleo i-stevenson jyuh Borelli jfr wnpx neveaire bertelsen cabbagezs julesyoo blobbybirdman hpaces vietanh0 waszak Bioinformatics
  • Multiple structural alignment by secondary structures: algorithm and applications.
    Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507.
    by O Dror, H Benyamini, R Nussinov, HJ Wolfson
    posted to bioinformatics modeling molecular by ziquje on 2005-02-23 16:18:08 as ** along with 2 people dimka analogAI
  • On ontologies for biologists: the Gene Ontology--untangling the web.
    Novartis Found Symp, Vol. 247 (2002)
    by M Ashburner, S Lewis
    posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:33:38 as ***** along with 1 person skhadar
  • A probabilistic view of gene function.
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564.
    by AG Fraser, EM Marcotte
    posted to bioinformatics gene-function by ziquje on 2005-02-22 16:32:00 as ** along with 9 people and 1 group snuppepuppan lfriedl opheliav wnpx samal grahamc massivemayhem bootsy vietanh0 kdl
  • A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 376-383.
    by Y Tohsato, H Matsuda, A Hashimoto
    posted to bioinformatics metabolics by ziquje on 2005-02-22 16:27:22 as **** along with 2 people dragonrez nuke2005
  • The gene ontology categorizer.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by CA Joslyn, SM Mniszewski, A Fulmer, G Heaton
    posted to bioinformatics gene-ontology by ziquje on 2005-02-22 16:25:36 as ** along with 1 person cmzmasek
  • EzCatDB: the Enzyme Catalytic-mechanism Database.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by N Nagano
    posted to bioinformatics enzyme by ziquje on 2005-02-22 16:22:09 as **** along with 4 people sim82 Jporci eweaver tny
  • The ENZYME data bank.
    Nucleic Acids Res, Vol. 22, No. 17. (September 1994), pp. 3626-3627.
    by A Bairoch
    posted to bioinformatics enzyme-nomenclature by ziquje on 2005-02-22 16:20:31 as ***** along with 1 person jdiezperezj
  • PromH: Promoters identification using orthologous genomic sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3540-3545.
    by VV Solovyev, IA Shahmuradov
    posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:19:45 as ***
  • Tools and resources for identifying protein families, domains and motifs.
    Genome Biol, Vol. 3, No. 1. (2002)
    by NJ Mulder, R Apweiler
    posted to bioinformatics protein-annotation by ziquje on 2005-02-17 18:18:39 as **
  • A novel method for prokaryotic promoter prediction based on DNA stability.
    BMC Bioinformatics, Vol. 6, No. 1. (5 January 2005)
    by A Kanhere, M Bansal
    posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:17:27 as *****
  • Prediction of prokaryotic promoters based on prediction of transcriptional units.
    Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai), Vol. 35, No. 4. (April 2003), pp. 317-324.
    by JC Lin, JL Xu, JH Luo, YX Li
    posted to bioinformatics promoter-prediction by ziquje on 2005-02-17 18:16:26 as **
  • ExPASy: The proteomics server for in-depth protein knowledge and analysis.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3784-3788.
    by E Gasteiger, A Gattiker, C Hoogland, I Ivanyi, RD Appel, A Bairoch
    posted to bioinformatics by ziquje on 2005-02-17 18:14:37 as read along with 2 people and 1 group grottenolm irenas dbk-lab
  • University bioinformatics programs on the rise.
    Nat Biotechnol, Vol. 19, No. 3. (March 2001), pp. 285-286.
    by RJ Zauhar
    posted to bioinformatics bioinformatics-curriculum by ziquje on 2005-02-17 18:11:57 as read along with 2 people kekib numata
  • Single nucleotide polymorphisms (SNPs) that map to gaps in the human SNP map.
    Nucleic Acids Res, Vol. 31, No. 16. (15 August 2003), pp. 4910-4916.
    by C Tsui, LE Coleman, JL Griffith, EA Bennett, SG Goodson, JD Scott, WS Pittard, SE Devine
    posted to bioinformatics snps by ziquje on 2005-02-17 18:07:24 as **
  • Advantages and limitations of microarray technology in human cancer.
    Oncogene, Vol. 22, No. 42. (29 September 2003), pp. 6497-6507.
    by G Russo, C Zegar, A Giordano
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:42:08 as ** along with 1 person junehlee
  • Candidate gene approach for pharmacogenetic studies.
    Pharmacogenomics, Vol. 3, No. 1. (January 2002), pp. 47-56.
    by HZ Ring, DL Kroetz
    posted to bioinformatics pharmacogenetics by ziquje on 2005-02-17 17:39:20 as **
  • Experiments using microarray technology: limitations and standard operating procedures.
    J Endocrinol, Vol. 178, No. 2. (August 2003), pp. 195-204.
    by T Forster, D Roy, P Ghazal
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:36:03 as **
  • Gene selection in microarray data: the elephant, the blind men and our algorithms.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 370-376.
    by G Stolovitzky
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:35:40 as *****
  • Post-analysis follow-up and validation of microarray experiments.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 509-514.
    by RF Chuaqui, RF Bonner, CJ Best, JW Gillespie, MJ Flaig, SM Hewitt, JL Phillips, DB Krizman, MA Tangrea, M Ahram, WM Linehan, V Knezevic, MR Emmert-Buck
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:58 as ** along with 2 people and 1 group stsaft irenas dbk-lab
  • Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data.
    Br J Cancer, Vol. 89, No. 9. (3 November 2003), pp. 1599-1604.
    by R Simon
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:23 as **
  • Navigating gene expression using microarrays--a technology review.
    Nat Cell Biol, Vol. 3, No. 8. (August 2001)
    by A Schulze, J Downward
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:32:23 as ** along with 7 people and 2 groups mcox numata alokm balicea dchughes jo_davies ale G4ID Genetics-of-Gambling
  • The use and analysis of microarray data.
    Nat Rev Drug Discov, Vol. 1, No. 12. (December 2002), pp. 951-960.
    by A Butte
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:31:26 as ** along with 2 people and 1 group irenas numata dbk-lab
  • Microbial gene identification using interpolated Markov models.
    Nucleic Acids Res, Vol. 26, No. 2. (15 January 1998), pp. 544-548.
    by SL Salzberg, AL Delcher, S Kasif, O White
    posted to bioinformatics gene-identification imm by ziquje on 2005-02-14 17:49:32 as ***** along with 5 people and 1 group wenhan gg bnchakraborty bluto jguinney MBLAB
  • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
    Nucleic Acids Res, Vol. 25, No. 5. (1 March 1997), pp. 955-964.
    by TM Lowe, SR Eddy
    posted to bioinformatics rna-prediction by ziquje on 2005-02-14 17:47:45 as ** along with 7 people and 1 group timflutre evaf arcticrasta dquest vwchan djkt dandaman beta
  • The PROSITE database, its status in 2002.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 235-238.
    by L Falquet, M Pagni, P Bucher, N Hulo, CJ Sigrist, K Hofmann, A Bairoch
    posted to bioinformatics protein-motif by ziquje on 2005-02-14 17:46:42 as ***** along with 3 people and 1 group irenas Cortel leelarcombe dbk-lab
  • Recent improvements to the PROSITE database.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by N Hulo, CJ Sigrist, V Le Saux, PS Langendijk-Genevaux, L Bordoli, A Gattiker, E De Castro, P Bucher, A Bairoch
    posted to bioinformatics protein-motif by ziquje on 2005-02-14 17:44:39 as ***** along with 1 person and 1 group irenas dbk-lab
  • Automatic annotation of protein motif function with Gene Ontology terms.
    BMC Bioinformatics, Vol. 5, No. 1. (2 September 2004)
    by X Lu, C Zhai, V Gopalakrishnan, BG Buchanan
    posted to bioinformatics gene-ontology protein-motif by ziquje on 2005-02-14 17:37:19 as **
  • TIGRFAMs: a protein family resource for the functional identification of proteins.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 41-43.
    by DH Haft, BJ Loftus, DL Richardson, F Yang, JA Eisen, IT Paulsen, O White
    posted to bioinformatics protein-family tigrfams by ziquje on 2005-02-14 17:34:53 as ***** along with 1 person wenhan
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280.
    by A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, S Griffiths-Jones, KL Howe, M Marshall, EL Sonnhammer
    posted to bioinformatics pfam protein-family by ziquje on 2005-02-14 17:25:40 as ** along with 7 people bandrewfox Cortel cjeans mirzazadeh wenhan antonkratz IrinaMoreira
  • Improved microbial gene identification with GLIMMER.
    Nucleic Acids Res, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to bioinformatics gene-prediction by ziquje on 2005-02-14 17:22:56 as ***** along with 3 people dquest gelack wenhan
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 32 Database issue (1 January 2004)
    by A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, A Khanna, M Marshall, S Moxon, EL Sonnhammer, DJ Studholme, C Yeats, SR Eddy
    posted to bioinformatics pfam protein-database by ziquje on 2005-02-14 17:19:49 as ***** along with 4 people LeightonP chad_davis cjeans wenhan
  • Functional genomics and proteomics--the role of nuclear medicine.
    Eur J Nucl Med Mol Imaging, Vol. 29, No. 1. (January 2002), pp. 115-132.
    by U Haberkorn, A Altmann, M Eisenhut
    posted to bioinformatics by ziquje on 2005-08-18 19:10:45 as **
  • Bioinformatics and genomic medicine.
    Genet Med, Vol. 4, No. 6 Suppl. (c 2002)
    by JH Kim
    posted to bioinformatics by ziquje on 2005-08-18 19:08:59 as **
  • Intrinsic errors in genome annotation
    Trends in Genetics, Vol. 17, No. 8. (01 August 2001), pp. 429-431.
    by Damien Devos, Alfonso Valencia
    posted to bioinformatics genome-annotation by ziquje on 2005-02-08 18:03:06 as *****
  • Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
    BMC Bioinformatics, Vol. 3, No. 1. (2002)
    by S Bocs, A Danchin, C Médigue
    posted to bioinformatics re-annotation by ziquje on 2005-02-08 17:49:49 as ****
  • The past, present and future of genome-wide re-annotation.
    Genome Biol, Vol. 3, No. 2. (2002)
    by CA Ouzounis, PD Karp
    posted to bioinformatics genome-wide re-annotation by ziquje on 2005-02-08 17:48:44 as **
  • Connecting the dots between genes, biochemistry, and disease susceptibility: systems biology modeling in human genetics
    Molecular Genetics and Metabolism, Vol. 84, No. 2. (February 2005), pp. 104-111.
    by Jason H Moore, Erik M Boczko, Marshall L Summar
    posted to bioinformatics by ziquje on 2005-02-01 22:33:55 as ***** along with 3 people BioGeek cantupaz wnpx
  • Overview of commonly used bioinformatics methods and their applications.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 10-21.
    by IM Kapetanovic, S Rosenfeld, G Izmirlian
    posted to bioinformatics methods by ziquje on 2005-05-26 19:27:34 as ***** along with 1 person jyuh
  • Genome-wide operon prediction in Staphylococcus aureus.
    Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3689-3702.
    by L Wang, JD Trawick, R Yamamoto, C Zamudio
    posted to bioinformatics genome-analysis operon-prediction by ziquje on 2005-01-25 14:33:11 as read
  • Having a BLAST with bioinformatics (and avoiding BLASTphemy).
    Genome Biol, Vol. 2, No. 10. (2001)
    by A Pertsemlidis, JW Fondon
    posted to bioinformatics blast data-mining sequence-similarity-searching by ziquje on 2005-01-25 14:29:07 as read along with 8 people and 2 groups karbak prtmht textoris shantanu cjeans sujaikumar scottstensland hpaces MathBio Bioinformatics
  • Architectures for Java-based bioinformatics applications
    Industrial Management & Data Systems, Vol. 104, No. 7. (1 July 2004), pp. 578-588.
    by Suresh Chalasani, Robert Barber
    posted to bioinformatics by ziquje on 2005-01-25 14:16:54 as **** along with 2 people gbilder numata
  • Incorporating structure to predict microRNA targets.
    Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 4006-4009.
    by H Robins, Y Li, RW Padgett
    posted to bioinformatics mirna by zibdum on 2008-01-03 15:16:07 as ** along with 4 people and 1 group maralena sennoma jfr heliopais microRNA
  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
    posted to bioinformatics comparison genetics impact review sequencing by zerojinx on 2008-02-25 11:51:12 as ** along with 9 people and 2 groups cybaer1 jlgreen hpaces giovenko jyuh dchughes djkt niallhaslam urgi iSEEM Green Lab
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to bioinformatics commentary interaction network protein by Yumyai on 2008-04-14 13:29:27 as read along with 14 people and 1 group paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv GeneGo
  • Computational biology and high-performance computing
    Commun. ACM, Vol. 47, No. 11. (November 2004), pp. 34-41.
    by David A Bader
    posted to bioinformatics by yiban on 2006-08-01 14:38:21 as **** along with 1 person mercutio
  • The minimum information required for reporting a molecular interaction experiment (MIMIx)
    Nature Biotechnology, Vol. 25, No. 8. (08 August 2007), pp. 894-898.
    by Sandra Orchard, Lukasz Salwinski, Samuel Kerrien, Luisa Montecchi-Palazzi, Matthias Oesterheld, Volker Stümpflen, Arnaud Ceol, Andrew Chatr-Aryamontri, John Armstrong, Peter Woollard, John J Salama, Susan Moore, Jérôme Wojcik, Gary D Bader, Marc Vidal, Michael E Cusick, Mark Gerstein, Anne-Claude Gavin, Giulio Superti-Furga, Jack Greenblatt, Joel Bader, Peter Uetz, Mike Tyers, Pierre Legrain, Stan Fields, Nicola Mulder, Michael Gilson, Michael Niepmann, Lyle Burgoon, Javier, Carlos Prieto, Victoria M Perreau, Chris Hogue, Hans-Werner Mewes, Rolf Apweiler, Ioannis Xenarios, David Eisenberg, Gianni Cesareni, Henning Hermjakob
    posted to bioinformatics interaction protein by yeastyboy on 2007-08-14 09:12:51 as *** along with 4 people and 1 group jyuh hpiwowar grahamc softsimu ParkinsonLab_at_MaRS
  • Characterization and prediction of protein-protein interactions within and between complexes.
    Proc Natl Acad Sci U S A (26 September 2006)
    by Einat Sprinzak, Yael Altuvia, Hanah Margalit
    posted to bioinformatics interaction protein by yeastyboy on 2006-12-01 09:00:08 as ** along with 1 person chad_davis
  • Modeling the Cell Division Cycle: cdc2 and Cyclin Interactions
    Proceedings of the National Academy of Sciences, Vol. 88, No. 16. (15 August 1991), pp. 7328-7332.
    by JJ Tyson
    posted to bioinformatics by ycho76 on 2008-06-10 05:51:49 as **
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