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Tag bioinformatic [158 articles]

Recent papers classified by the tag bioinformatic.
  • A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data
    Bioinformatics (19 September 2007), btm461.
    by Lennart J Post, Marco Roos, Scott M Marshall, Roel Driel, Timo M Breit
    posted to bioinformatic data integration semanticweb by Simplicity on 2008-01-23 07:25:23 as ** along with 4 people jyuh epigenetics tharris dansullivanblk
  • Beyond the data deluge: Data integration and bio-ontologies
    Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 314-320.
    by Judith A Blake, Carol J Bult
    posted to bioinformatic data integration ontology by Simplicity on 2008-01-18 10:06:17 as ** along with 6 people ientb jyuh dullhunk thau MrData dansullivanblk
  • BioWarehouse: a bioinformatics database warehouse toolkit
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Thomas Lee, Yannick Pouliot, Valerie Wagner, Priyanka Gupta, David S Calvert, Jessica Tenenbaum, Peter Karp
    posted to bioinformatic data database software by Simplicity on 2008-01-23 07:07:06 as ** along with 2 people eweaver mircea
  • Atlas - a data warehouse for integrative bioinformatics.
    BMC Bioinformatics, Vol. 6 (2005)
    by SP Shah, Y Huang, T Xu, MM Yuen, J Ling, BF Ouellette
    posted to bioinformatic data integration by Simplicity on 2008-01-23 06:58:05 as ** along with 2 people druvus pablomendes
  • Special section: Life science grids for biomedicine and bioinformatics
    Future Generation Computer Systems, Vol. 23, No. 3. (March 2007), pp. 367-370.
    by Giovanni Aloisio, Vincent Breton, Maria Mirto, Almerico Murli, Tony Solomonides
    posted to bioinformatic grid lifescience by Simplicity on 2008-01-18 09:25:19 as **
  • Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues
    Genome Biology, Vol. 9, No. 9. (2008)
    by Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf Skotheim, Mari Bjorkman, John P Mpindi, Saija H Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi
    posted to profiling human bioinformatic by pengchy on 2008-10-01 05:23:29 as ** along with 7 people and 1 group shikin grahamc imina jyuh klo fpattyn dolchan GeneGo
  • Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells
    BMC Bioinformatics, Vol. 9 (29 September 2008), 404.
    by Atsushi Niida, Andrew D Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q Zhang, Tetsu Akiyama
    posted to transcriptional_regulatory method integrate bioinformatic by pengchy on 2008-10-05 08:09:18 as ** along with 1 person xili03
  • Toucan: deciphering the cis-regulatory logic of coregulated genes.
    Nucleic Acids Res, Vol. 31, No. 6. (15 March 2003), pp. 1753-1764.
    by S Aerts, G Thijs, B Coessens, M Staes, Y Moreau, B De Moor
    posted to analysis bioinformatic logiciel promoter by nur77 on 2006-02-06 13:07:06 as ** along with 5 people and 1 group troels_marstrand kaspermunch nklee yevishere xili03 Bioinformatics
  • PubNet: a flexible system for visualizing literature derived networks.
    Genome Biol, Vol. 6, No. 9. (2005)
    by SM Douglas, GT Montelione, M Gerstein
    posted to analysis bibliography bioinformatic network by nur77 on 2006-01-23 23:38:27 as ** along with 7 people and 5 groups A_Olympia aalibes yas yish leonardo dullhunk ianturton mathgamespatterns T_lab dtl vds-arg eni
  • GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2883-2885.
    by P D'Addabbo, L Lenzi, F Facchin, R Casadei, S Canaider, L Vitale, F Frabetti, P Carinci, M Zannotti, P Strippoli
    posted to bioinformatic database relational by nur77 on 2006-01-23 23:31:14 as ** along with 1 person and 1 group irenas dbk-lab
  • Genome-wide promoter extraction and analysis in human, mouse, and rat.
    Genome Biol, Vol. 6, No. 8. (2005)
    by Z Xuan, F Zhao, J Wang, G Chen, MQ Zhang
    posted to bioinformatic human mouse promoter rat by nur77 on 2006-01-23 23:35:19 as ** along with 2 people uz_labu_laimi caseybrown
  • An integration platform for heterogeneous bioinformatics software components
    IBM Syst. J., Vol. 40, No. 2. (February 2001), pp. 570-591.
    by AC Siepel, AN Tolopko, AD Farmer, PA Steadman, FD Schilkey, Dawn B Perry, WD Beavis
    posted to bioinformatic biowbi biowms diplomarbeit ibm printed wfmc by moborg on 2007-10-03 16:41:48 as ** along with 1 person krissp
  • BioWMS: a web-based Workflow Management System for bioinformatics.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    by E Bartocci, F Corradini, E Merelli, L Scortichini
    posted to bioinformatic biowms diplomarbeit printed web workflow by moborg on 2007-09-20 15:12:04 as read along with 3 people druvus jyuh dullhunk
  • Bioclipse: An open source workbench for chemo- and bioinformatics
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Ola Spjuth, Tobias Helmus, Egon Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter M Rust, Christoph Steinbeck, Jarl Wikberg
    posted to bioinformatic diplomarbeit by moborg on 2007-07-23 16:56:15 as ** along with 9 people and 3 groups nicklynch eweaver dullhunk kehan fisherp egonw sci91078 jyuh alanrw biodiversity_conservation Bioinformatics GrassBase
  • Exploring Williams-Beuren syndrome using myGrid.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by RD Stevens, HJ Tipney, CJ Wroe, TM Oinn, M Senger, PW Lord, CA Goble, A Brass, M Tassabehji
    posted to bioinformatic diplomarbeit grid grid-comparison by moborg on 2007-07-23 17:00:30 as ** along with 3 people dullhunk fisherp alanrw
  • BNDB - The Biochemical Network Database
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Jan Kuentzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans P Lenhof
    posted to bioinformatic db dbcollection by moborg on 2008-03-18 15:08:04 as ** along with 4 people and 1 group jyuh niallhaslam julesyoo mircea NCCT Lab Reading Group
  • An Environment to Define and Execute In-Silico Workflows Using Web Services
    Data Integration in the Life Sciences (2005), pp. 288-291.
    by Rafael Targino, Maria C Cavalcanti, Marta Mattoso
    posted to bioinformatic bpel diplomarbeit webservices workflow by moborg on 2007-09-15 16:08:07 as **
  • Bioinformatics: Managing Scientific Data (The Morgan Kaufmann Series in Multimedia and Information Systems)
    (08 September 2003)
    by Zoé Lacroix, Terence Critchlow
    posted to bioinformatic data diplomarbeit by moborg on 2007-07-16 16:52:08 as ** along with 2 people dullhunk lei
  • Biopipe: a flexible framework for protocol-based bioinformatics analysis.
    Genome Res, Vol. 13, No. 8. (August 2003), pp. 1904-1915.
    by S Hoon, KK Ratnapu, JM Chia, B Kumarasamy, X Juguang, M Clamp, A Stabenau, S Potter, L Clarke, E Stupka
    posted to bioinformatic biolibs diplomarbeit framework workflow by moborg on 2007-10-03 17:27:48 as ** along with 3 people and 1 group indigoviolet dullhunk jermth EisenLab
  • Biotool2Web: creating simple Web interfaces for bioinformatics applications.
    Appl Bioinformatics, Vol. 5, No. 1. (2006), pp. 63-66.
    by M Shahid, I Alam, G Fuellen
    posted to applications bioinformatic printed web webservices by moborg on 2007-09-23 15:37:24 as read along with 2 people jyuh asddd
  • The Bio* toolkits--a brief overview.
    Brief Bioinform, Vol. 3, No. 3. (September 2002), pp. 296-302.
    by H Mangalam
    posted to bioinformatic biolibs diplomarbeit by moborg on 2007-10-03 17:09:30 as ** along with 4 people chad_davis dullhunk noby bertelsen
  • A Taxonomy of Workflow Management Systems for Grid Computing
    Journal of Grid Computing, Vol. 3, No. 3-4. (September 2005), pp. 171-200.
    by Jia Yu, Rajkumar Buyya
    posted to bioinformatic diplomarbeit printed wfms workflow by moborg on 2007-10-05 10:34:44 as ** along with 4 people and 1 group ddahlem charoy javo_eupla hwang ecoo-pe
  • Knowledge Discovery for Biology with Taverna
    Semantic Web (2007), pp. 355-395.
    by Carole Goble, Katy Wolstencroft, Antoon Goderis, Duncan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Daniele Turi, Robert Stevens, Tom Oinn, David Roure
    posted to bioinformatic diplomarbeit semantic taverna by moborg on 2007-10-19 14:18:16 as ** along with 1 person dullhunk
  • Workflows for e-Science: Scientific Workflows for Grids
    (18 December 2006)
    by Ian J Taylor, Ewa Deelman, Dennis B Gannon
    posted to bioinformatic diplomarbeit workflow by moborg on 2007-09-15 17:13:31 as read along with 2 people and 1 group irenas dullhunk dbk-lab
  • CLUSTAL: a package for performing multiple sequence alignment on a microcomputer
    Gene, Vol. 73, No. 1. (15 December 1988), pp. 237-244.
    by Desmond G Higgins, Paul M Sharp
    posted to algorithms bioinformatic diplomarbeit by moborg on 2008-03-13 14:16:19 as ** along with 1 person AbnerCYH
  • Automation of in-silico data analysis processes through workflow management systems.
    Brief Bioinform, Vol. 9, No. 1. (January 2008), pp. 57-68.
    by P Romano
    posted to bioinformatic diplomarbeit notprinted wfms xml by moborg on 2008-03-12 08:46:24 as ** along with 2 people jyuh seemu
  • XML schemas for common bioinformatic data types and their application in workflow systems
    BMC Bioinformatics, Vol. 7 (06 November 2006), 490.
    by Philipp N Seibel, Jan Kruger, Sven Hartmeier, Knut Schwarzer, Kai Lowenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich
    posted to biodom bioinformatic datatype diplomarbeit formats hobit printed workflow xml by moborg on 2007-10-01 15:51:35 as read along with 2 people dullhunk christianselig
  • No place like Ome
    Genome Biology, Vol. 3, No. 7. (2002), pp. comment1010.1-comment1010.2.
    by Gregory Petsko
    posted to bioinformatic diplomarbeit omics by moborg on 2007-11-06 17:40:30 as **
  • Interoperability with Moby 1.0--It's better than sharing your toothbrush!
    Brief Bioinform (31 January 2008), bbn003.
    by The B Consortium
    posted to bioinformatic biomoby diplomarbeit by moborg on 2008-03-10 10:21:40 as ***** along with 4 people jyuh dullhunk hpiwowar wisdom_love
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to bioinformatic blast diplomarbeit standard by moborg on 2007-11-03 13:44:26 as ** along with 45 people and 6 groups pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 662-672.
    by E Camon, M Magrane, D Barrell, D Binns, W Fleischmann, P Kersey, N Mulder, T Oinn, J Maslen, A Cox, R Apweiler
    posted to bioinformatic diplomarbeit standard by moborg on 2008-04-21 15:24:21 as ** along with 2 people CitoJam alanrw
  • iHOP web services.
    Nucleic Acids Res (7 May 2007)
    by José M M Fernández, Robert Hoffmann, Alfonso Valencia
    posted to bioinformatic diplomarbeit rest webservices by moborg on 2007-10-20 18:31:30 as ** along with 7 people and 1 group jyuh austin balajis dullhunk fisherp mroos alanrw AID
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
    posted to bioinformatic diplomarbeit notprinted opensource by moborg on 2008-03-12 08:49:01 as ** along with 7 people and 2 groups Ayest yas eweaver indigoviolet dgront stajich george_g EisenLab T_lab
  • CARGO: a web portal to integrate customized biological information.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by I Cases, DG Pisano, E Andres, A Carro, JM Fernández, G Gómez-López, JM Rodriguez, JF Vera, A Valencia, AM Rojas
    posted to bioinformatic diplomarbeit portal web by moborg on 2007-08-14 13:54:31 as ** along with 3 people jyuh jfr skhadar
  • Bioinformatics: bringing it all together.
    Nature, Vol. 419, No. 6908. (17 October 2002)
    by M Chicurel
    posted to bioinformatic diplomarbeit motivation by moborg on 2007-10-22 15:54:05 as read along with 2 people and 1 group leechuck yas T_lab
  • Transparent access to multiple bioinformatics information sources
    IBM Syst. J., Vol. 40, No. 2. (February 2001), pp. 532-551.
    by CA Goble, R Stevens, G Ng, S Bechhofer, NW Paton, PG Baker, M Peim, A Brass
    posted to bioinformatic diplomarbeit tambis by moborg on 2007-10-22 15:57:12 as *
  • Open bioinformatics.
    Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 679-680.
    by DC Jamison
    posted to bioinformatic diplomarbeit open printed by moborg on 2007-09-23 16:03:10 as read
  • Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
    Nat Immunol, Vol. 5, No. 8. (August 2004), pp. 768-774.
    by J Nardone, DU Lee, KM Ansel, A Rao
    posted to bench_biologist bioinformatic diplomarbeit by moborg on 2007-09-21 15:42:13 as ** along with 3 people ziquje kianpeng Jporci
  • DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Amarendran Subramanian, Jan W Menkhoff, Michael Kaufmann, Burkhard Morgenstern
    posted to bioinformatic diplomarbeit by moborg on 2008-04-18 19:24:06 as **
  • BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations
    Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1831-1833.
    by Arnaud Kerhornou, Roderic Guigo
    posted to bioinformatic biomoby diplomarbeit webservices by moborg on 2007-10-19 14:21:24 as ** along with 2 people jyuh dullhunk
  • BMC Bioinformatics comes of age.
    BMC Bioinformatics, Vol. 6 (2005)
    by MJ Cockerill
    posted to bioinformatic diplomarbeit printed by moborg on 2007-09-23 16:04:47 as read along with 3 people and 1 group irenas dullhunk sci91078 dbk-lab
  • Workflow based framework for life science informatics.
    Comput Biol Chem, Vol. 31, No. 5-6. (October 2007), pp. 305-319.
    by A Tiwari, AK Sekhar
    posted to bioinformatic diplomarbeit escience workflow by moborg on 2007-10-19 12:53:21 as ** along with 1 person jyuh
  • The impact of Life Science Identifier on informatics data
    Drug Discovery Today, Vol. 10, No. 22. (15 November 2005), pp. 1566-1572.
    by Sean Martin, Moses M Hohman, Ted Liefeld
    posted to bioinformatic diplomarbeit lsid notprinted by moborg on 2008-03-12 14:45:11 as ** along with 2 people nicklynch jandot
  • A knowledge discovery object model API for Java
    BMC Bioinformatics, Vol. 4, No. 1. (2003)
    by Scott Zuyderduyn, Steven Jones
    posted to bioinformatic biomoby java by moborg on 2007-09-06 14:19:14 as **
  • The design of Jemboss: a graphical user interface to EMBOSS.
    Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1837-1843.
    by T Carver, A Bleasby
    posted to bioinformatic diplomarbeit emboss gui soap by moborg on 2007-10-18 19:04:48 as ** along with 1 person jyuh
  • Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data
    Data Integration in the Life Sciences (2006), pp. 248-263.
    by Timothy Mcphillips, Shawn Bowers, Bertram Ludäscher
    posted to bioinformatic diplomarbeit kepler wfms by moborg on 2008-04-22 12:49:26 as **
  • ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services
    Euro-Par 2006 Parallel Processing (2006), pp. 1148-1158.
    by Patrick May, Hans-Christian Ehrlich, Thomas Steinke
    posted to bioinformatic diplomarbeit notprinted webservices workflow by moborg on 2007-10-05 10:36:24 as **
  • The war of the whorls: genetic interactions controlling flower development.
    Nature, Vol. 353, No. 6339. (5 September 1991), pp. 31-37.
    by ES Coen, EM Meyerowitz
    posted to abc bioinformatic diplomarbeit by moborg on 2008-05-05 17:18:44 as **
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to algorithms bioinformatic diplomarbeit by moborg on 2008-03-13 14:26:31 as ** along with 24 people and 1 group usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu newton1234 Lombardo_7 biomedical-nlp
  • Using provenance to manage knowledge of In Silico experiments
    Brief Bioinform, Vol. 8, No. 3. (1 May 2007), pp. 183-194.
    by Robert Stevens, Jun Zhao, Carole Goble
    posted to bioinformatic diplomarbeit notprinted provenance by moborg on 2007-09-20 16:04:30 as **** along with 3 people girschick fisherp alanrw
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