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Tag bacterial [192 articles]

Recent papers classified by the tag bacterial.
  • Adaptive Mutations in Bacteria: High Rate and Small Effects
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 813-815.
    by Lilia Perfeito, Lisete Fernandes, Catarina Mota, Isabel Gordo
    posted to bacterial genome mutation by zwang on 2007-08-15 03:22:01 as * along with 2 people and 1 group stevanspringer operon FAB-lab
  • Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Yousuke Nishio, Yoshihiro Usuda, Kazuhiko Matsui, Hiroyuki Kurata
    posted to bacterial design insilico by zwang on 2008-01-15 16:39:00 as *** along with 1 person renatomilani
  • InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
    BMC Bioinformatics, Vol. 8 (26 October 2007), 414.
    by Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
    posted to bacterial genome interaction prediction protein by zwang on 2007-10-29 13:11:19 as ** along with 2 people and 1 group tmmurali iris_2001 csb_journal_club_public
  • Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens
    Annual Review of Microbiology, Vol. 62, No. 1. (2008), pp. 53-70.
    by Mark Achtman
    posted to structure evolution bacterial by zwang on 2008-09-13 02:50:18 as **
  • Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay
    RNA, Vol. 10, No. 10. (1 October 2004), pp. 1595-1608.
    by Jeremy J Day-Storms, S Niranjanakumari, Carol A Fierke
    posted to bacterial interaction magnetic protein rna rnasep by zwang on 2008-03-21 07:55:58 as *****
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacterial gene ortholog regulation transcription by zwang on 2007-11-02 08:03:07 as ** along with 6 people and 3 groups dpollard dquest djkt cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
    posted to bacterial network protein by zwang on 2007-08-03 01:47:02 as ** along with 6 people and 4 groups aswin grahamc jmrivort Pao-Yang carlk cerca G-quadruplex Supramolecular ParkinsonLab_at_MaRS OPIG
  • Inhibition of expression of virulence genes of Yersinia pestis in Escherichia coli by external guide sequences and RNase P
    RNA (20 June 2008), rna.1120508.
    by Jae-Hyeong Ko, Mina Izadjoo, Sidney Altman
    posted to bacterial expression rnasep by zwang on 2008-06-25 04:44:36 as ****
  • Bacterial RNase P RNA Is a Drug Target for Aminoglycoside−Arginine Conjugates
    Bioconjugate Chem. (20 August 2008)
    by Alexander Berchanski, Aviva Lapidot
    posted to bacterial rna rnasep by zwang on 2008-08-23 10:00:04 as ****
  • RNA visualization in live bacterial cells using fluorescent protein complementation
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 421-427.
    by Maria Valencia-Burton, Ron M Mccullough, Charles R Cantor, Natalia E Broude
    posted to bacterial fluorescent protein rna visualization by zwang on 2007-04-27 12:18:51 as **** along with 5 people jjray jyuh madhadron medelyan austin
  • Construction of consecutive deletions of the Escherichia coli chromosome
    Mol Syst Biol, Vol. 3 (2007)
    by Jun-Ichi Kato, Masayuki Hashimoto
    posted to bacterial chromosome deletion ecoli by zwang on 2007-08-15 03:07:11 as *
  • Genome Transplantation in Bacteria: Changing One Species to Another
    Science (28 June 2007), 1144622.
    by Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Hutchison, Hamilton O Smith, Craig J Venter
    posted to bacterial genome specy by zwang on 2007-08-09 15:36:57 as ** along with 8 people and 1 group jyuh operon madhadron yeastyboy grahamc cabbagezs gulsacan westoll Bioinformatics
  • Suppression of the MicroRNA Pathway by Bacterial Effector Proteins
    Science, Vol. 321, No. 5891. (15 August 2008), pp. 964-967.
    by Lionel Navarro, Florence Jay, Kinya Nomura, Sheng Y He, Olivier Voinnet
    posted to bacterial protein rna by zwang on 2008-08-16 07:33:15 as ** along with 2 people caizhiqiang erel10
  • Inhibition of Escherichia coli RNase P by oligonucleotide directed misfolding of RNA
    RNA, Vol. 9, No. 12. (1 December 2003), pp. 1437-1445.
    by Jessica L Childs, Alex W Poole, Douglas H Turner
    posted to bacterial folding rna rnasep by zwang on 2008-03-11 05:35:11 as ****
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to bacterial rna structure by zwang on 2007-08-28 03:58:36 as * along with 2 people margaritis Jporci
  • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Robert Schuetz, Lars Kuepfer, Uwe Sauer
    posted to bacterial prediction systematic by zwang on 2007-07-11 19:28:02 as ** along with 4 people and 1 group alexg fishtank Ema michaelbarton Bioinformatics
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to bacterial insilico ncrna regulatory rna by zwang on 2007-08-29 02:30:33 as * along with 4 people sebastien_vigneau lp2 cabbagezs blobbybirdman
  • Genome Analysis of Minibacterium massiliensis Highlights the Convergent Evolution of Water-Living Bacteria
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e138.
    by Stéphane Audic, Catherine Robert, Bernard Campagna, Hugues Parinello, Jean-Michel Claverie, Didier Raoult, Michel Drancourt
    posted to bacterial evolution genome by zwang on 2007-09-03 15:16:47 as *
  • High-throughput cloning and expression in recalcitrant bacteria
    Nat Meth, Vol. 4, No. 9. (2007), pp. 705-707.
    by Eric R Geertsma, Bert Poolman
    posted to bacterial expression protein by zwang on 2007-08-31 16:21:56 as * along with 2 people Yanno jyuh
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
    posted to bacterial eukaryota evolution gene genome lgt by zwang on 2007-10-11 02:03:35 as **** along with 7 people and 2 groups dpollard bluto emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
  • Phylogenetic exploration of bacterial genomic rearrangements
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1172-1174.
    by Romain Fremez, Thomas Faraut, Gwennaele Fichant, Jerome Gouzy, Yves Quentin
    posted to bacterial genome phylogeny by zwang on 2007-05-10 08:13:26 as ** along with 1 person operon
  • Recombination and the Nature of Bacterial Speciation
    Science, Vol. 315, No. 5811. (26 January 2007), pp. 476-480.
    by Christophe Fraser, William P Hanage, Brian G Spratt
    posted to bacterial speciation by zwang on 2007-04-12 10:37:36 as ** along with 3 people dayjm jmeppley aswin
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to bacterial rna structure transcription by zwang on 2007-08-28 03:59:15 as * along with 2 people margaritis Jporci
  • On Torque and Tumbling in Swimming Escherichia coli
    J. Bacteriol., Vol. 189, No. 5. (1 March 2007), pp. 1756-1764.
    by Nicholas C Darnton, Linda Turner, Svetlana Rojevsky, Howard C Berg
    posted to bacterial chemotaxis coli escherichia motor by vladimirov on 2007-10-09 14:37:38 as **
  • Noise in gene expression as the source of non-genetic individuality in the chemotactic response of Escherichia coli
    FEBS Letters, Vol. 550, No. 1-3. (28 August 2003), pp. 135-138.
    by MD Levin
    posted to adaptation bacterial chemotaxis individuality noise by vladimirov on 2008-03-03 12:38:47 as read
  • Transient Response to Chemotactic Stimuli in Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 72, No. 8. (15 August 1975), pp. 3235-3239.
    by Howard C Berg, PM Tedesco
    posted to bacterial chemotaxis escherichia response transient by vladimirov on 2008-02-10 12:08:55 as read
  • Simulating Chemosensory Responses of Marine Microorganisms
    Limnology and Oceanography, Vol. 32, No. 6. (1987), pp. 1253-1266.
    by George A Jackson
    posted to bacterial chemotaxis ecology monte-carlo simulation by vladimirov on 2007-10-30 19:17:17 as **
  • Optimal Noise Filtering in the Chemotactic Response of Escherichia coli
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e154.
    by Burton W Andrews, Tau-Mu Yi, Pablo A Iglesias
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:14:18 as ** along with 1 person bayesian
  • Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.
    J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53.
    by K Lipkow, SS Andrews, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 12:44:24 as ** along with 6 people and 2 groups chrn roland_ewald mattis23 RebeccaHamer csanford gabe_rosser dIEMoSIRIS MoSi-Rostock
  • Quantitative studies of bacterial chemotaxis and microbial population dynamics
    Microbial Ecology, Vol. 22, No. 1. (5 December 1991), pp. 175-185.
    by Douglas Lauffenburger
    posted to bacterial chemotaxis competition ecology population by vladimirov on 2008-04-16 13:50:46 as read
  • An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli
    Proceedings of the National Academy of Sciences, Vol. 102, No. 48. (29 November 2005), pp. 17354-17359.
    by Bernardo A Mello, Yuhai Tu
    posted to bacterial chemotaxis coli escherichia mwc receptor simulation by vladimirov on 2008-01-25 14:50:49 as read
  • Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis.
    Molecular biology of the cell, Vol. 6, No. 10. (October 1995), pp. 1367-1380.
    by D Bray, RB Bourret
    posted to bacterial bct chemotaxis model by vladimirov on 2008-06-18 16:07:01 as read
  • Real-time imaging of fluorescent flagellar filaments.
    J Bacteriol, Vol. 182, No. 10. (May 2000), pp. 2793-2801.
    by L Turner, WS Ryu, HC Berg
    posted to bacterial chemotaxis flagellar motor real-time run tumble by vladimirov on 2008-01-31 13:33:06 as read along with 1 person chrn
  • Chemosensing in Escherichia coli: Two regimes of two-state receptors
    Proceedings of the National Academy of Sciences, Vol. 103, No. 6. (7 February 2006), pp. 1786-1791.
    by Juan E Keymer, Robert G Endres, Monica Skoge, Yigal Meir, Ned S Wingreen
    posted to bacterial chemotaxis escherichia mwc receptor by vladimirov on 2008-01-04 11:41:01 as read
  • The bacterial chemotactic response reflects a compromise between transient and steady-state behavior.
    Proc Natl Acad Sci U S A (20 June 2005)
    by Damon A A Clark, Lars C C Grant
    posted to bacterial chemotaxis response by vladimirov on 2007-10-29 15:26:34 as ** along with 1 person rklancer
  • Operons in Escherichia coli: genomic analyses and predictions.
    Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6652-6657.
    by H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides
    posted to bacterial coli escherichia gene operon structure by vladimirov on 2007-10-11 13:29:47 as ** along with 2 people ziquje kaarsinogen
  • Predicting Temporal Fluctuations in an Intracellular Signalling Pathway
    Journal of Theoretical Biology (May 1998), pp. 117-128.
    by CJ Morton-Firth, D Bray
    posted to bacterial chemotaxis monte-carlo by vladimirov on 2008-06-18 11:19:10 as read
  • Origins of individual swimming behavior in bacteria.
    Biophys J, Vol. 74, No. 1. (January 1998), pp. 175-181.
    by MD Levin, CJ Morton-Firth, WN Abouhamad, RB Bourret, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:12:42 as ** along with 1 person chrn
  • Bacterial ABC transporters of amino acids.
    Res Microbiol, Vol. 152, No. 3-4. (y 2001), pp. 259-270.
    by AH Hosie, PS Poole
    posted to abc acids amino bacterial transporters by steinia on 2005-03-09 22:02:15 as ***
  • Role of phosphatidylglycerols in the stability of bacterial membranes
    Biochimie, Vol. 90 (2008), pp. 930-938.
    by Wei Zhao, Tomasz Rog, Andrey A Gurtovenko, Ilpo Vattulainen, Mikko Karttunen
    posted to bacterial pope popg by softsimu on 2008-04-01 21:21:28 as **
  • Herpesvirus latency confers symbiotic protection from bacterial infection
    Nature, Vol. 447, No. 7142., pp. 326-329.
    by Erik S Barton, Douglas W White, Jason S Cathelyn, Kelly A Brett-Mcclellan, Michael Engle, Michael S Diamond, Virginia L Miller, Herbert W Virgin
    posted to bacterial herpesvirus infection by Schmidtc on 2007-05-31 15:30:01 as **
  • Hydrodynamics of bacterial colonies: phase diagrams.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 562-570.
    by J Lega, T Passot
    posted to bacterial growth by perpetuale on 2008-04-04 13:03:51 as ** along with 1 person chrn
  • Modeling of the Bacterial Growth Curve.
    Appl Environ Microbiol, Vol. 56, No. 6. (June 1990), pp. 1875-1881.
    by M H H Zwietering, I Jongenburger, F M M Rombouts, K van 't Riet
    posted to bacterial growth by perpetuale on 2008-04-04 12:57:41 as ** along with 2 people cryomatth chochoz
  • BacSim, a simulator for individual-based modelling of bacterial colony growth.
    Microbiology, Vol. 144 ( Pt 12) (December 1998), pp. 3275-3287.
    by JU Kreft, G Booth, JW Wimpenny
    posted to bacterial growth simulation by perpetuale on 2008-04-04 12:44:11 as ** along with 2 people chrn nsamways
  • Bacterial viability and antibiotic susceptibility testing with SYTOX green nucleic acid stain
    Appl. Environ. Microbiol., Vol. 63, No. 6. (1 June 1997), pp. 2421-2431.
    by Bl Roth, M Poot, St Yue, Pj Millard
    posted to bacterial growth by perpetuale on 2007-07-18 03:05:32 as ***** along with 1 person and 1 group silverplasma Kopelman_Group
  • Effectiveness of SYTOX Green Stain for Bacterial Viability Assessment
    Appl. Environ. Microbiol., Vol. 64, No. 7. (1 July 1998), pp. 2697-2700.
    by P Lebaron, P Catala, N Parthuisot
    posted to bacterial growth by perpetuale on 2007-07-18 03:06:27 as ** along with 1 group Kopelman_Group
  • From the Cover: The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 18217-18222.
    by Colin J Ingham, Ad Sprenkels, Johan Bomer, Douwe Molenaar, Albert van den Berg, van Hylckama, Willem M de Vos
    posted to bacterial growth by perpetuale on 2008-04-04 12:53:15 as ** along with 3 people madhadron dbougioukou ganesank55
  • Microbiological safety of natural mineral water
    FEMS Microbiology Reviews, Vol. 26, No. 2. (2002), pp. 207-222.
    by Henri Leclerc, Annick Moreau
    posted to bacterial contamination by perpetuale on 2008-04-04 13:15:21 as **
  • Use of fluorescent probes to assess physiological functions of bacteria at single-cell level.
    Microbes Infect, Vol. 2, No. 12. (October 2000), pp. 1523-1535.
    by F Joux, P Lebaron
    posted to bacterial growth by perpetuale on 2007-07-18 13:44:03 as ** along with 1 group Kopelman_Group
  • Hungry bacteria - definition and properties of a nutritional state
    Environmental Microbiology, Vol. 3, No. 10. (2001), pp. 605-611.
    by Thomas Ferenci
    posted to bacterial growth by perpetuale on 2008-04-04 13:11:38 as **
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