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Tag amino [64 articles]

Recent papers classified by the tag amino.
  • Amino Acid Composition of the Fetal Pig
    J. Nutr., Vol. 129, No. 5. (1 May 1999), pp. 1031-1038.
    by Guoyao Wu, Troy L Ott, Darrell A Knabe, Fuller W Bazer
    posted to acid amino composition fetal pig by wirawan on 2008-03-13 10:20:56 as **
  • Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds.
    Protein Sci, Vol. 1, No. 2. (February 1992), pp. 216-226.
    by J Overington, D Donnelly, MS Johnson, A Sali, TL Blundell
    posted to acid amino matrix substitution by vavi on 2005-08-16 12:52:18 as *** along with 4 people and 1 group bicko Einat massivemayhem medic0747 structural_bioinformatics
  • Probing the Role of Axial Methionine in the Blue Copper Center of Azurin with Unnatural Amino Acids
    J. Am. Chem. Soc., Vol. 125, No. 29. (23 July 2003), pp. 8760-8768.
    by SM Berry, M Ralle, DW Low, NJ Blackburn, Y Lu
    posted to acid amino az unnatural by syamo on 2007-04-13 09:18:53 as ***
  • Bacterial ABC transporters of amino acids.
    Res Microbiol, Vol. 152, No. 3-4. (y 2001), pp. 259-270.
    by AH Hosie, PS Poole
    posted to abc acids amino bacterial transporters by steinia on 2005-03-09 22:02:15 as ***
  • An analysis of determinants of amino acids substitution rates in bacterial proteins.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 108-116.
    by EP Rocha, A Danchin
    posted to acid amino bacillus coli escherichia expression molevoltestis substitution subtilis by skumagai on 2008-06-06 16:02:41 as read along with 4 people and 1 group bjorns tny penka jpoyatos Nie
  • Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.
    Microbiology, Vol. 149, No. Pt 9. (September 2003), pp. 2585-2596.
    by JT Herbeck, DP Wall, JJ Wernegreen
    posted to acid amino bias bottleneck codon drift endosymbiont expression fly gene genetic molevoltestis mutational population tsetse usage wigglesworthia by skumagai on 2008-06-06 13:56:42 as read along with 2 people operon bjorns
  • The genomic rate of adaptive amino acid substitution in Drosophila.
    Molecular biology and evolution, Vol. 21, No. 7. (July 2004), pp. 1350-1360.
    by N Bierne, A Eyre-Walker
    posted to acid adaptive amino drosophila molevoltestis positive selection substitution by skumagai on 2008-06-06 01:44:36 as read
  • The rapid generation of mutation data matrices from protein sequences.
    Comput Appl Biosci, Vol. 8, No. 3. (June 1992), pp. 275-282.
    by DT Jones, WR Taylor, JM Thornton
    posted to acid amino jtt matrix molevoltestis substitution by skumagai on 2008-06-06 14:09:12 as read along with 1 person ssgong
  • Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
    Molecular Biology and Evolution, Vol. 22, No. 4. (April 2005), pp. 1107-1118.
    by Ziheng Yang, Wendy S Wong, Rasmus Nielsen
    posted to acid amino bayes empirical molevoltestis positive selection by skumagai on 2008-06-06 16:23:44 as read along with 6 people and 1 group rabu BioNica Natasha stajich Garamonfok CharlesM Berkeley Mycology
  • The classification of amino acid conservation.
    J Theor Biol, Vol. 119, No. 2. (21 March 1986), pp. 205-218.
    by WR Taylor
    posted to acid amino classification conservation by siebertm on 2007-05-05 15:27:19 as ** along with 1 person gisle
  • Development of liquid chromatographic method for the analysis of kanamycin residues in varicella vaccine using phenylisocyanate as a derivatization reagent.
    J Chromatogr B Biomed Sci Appl, Vol. 752, No. 1. (5 March 2001), pp. 173-177.
    by BH Kim, YK Kim, JH Ok
    posted to amino analysis hplc sugar by robert on 2008-03-14 15:30:47 as **
  • Applications of the ninhydrin reaction for analysis of amino acids, peptides, and proteins to agricultural and biomedical sciences.
    Journal of agricultural and food chemistry, Vol. 52, No. 3. (11 February 2004), pp. 385-406.
    by M Friedman
    posted to amino aminoacid analysis fluorescence by robert on 2008-06-04 09:32:49 as **
  • Simple Physics-Based Analytical Formulas for the Potentials of Mean Force for the Interaction of Amino Acid Side Chains in Water. IV. Pairs of Different Hydrophobic Side Chains
    J. Phys. Chem. B (14 August 2008)
    by Mariusz Makowski, Emil Sobolewski, Cezary Czaplewski, Stanisław Ołdziej, Adam Liwo, Harold A Scheraga
    posted to acid amino chains side water by paulschlesinger on 2008-08-15 01:17:18 as **
  • Predicting the effect of a point mutation on a protein fold: the Villin and Advillin headpieces and their Pro62Ala mutants
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Stefano Piana, Alessandro Laio, Fabrizio Marinelli, Marleen Van Troys, David Bourry, Christophe Ampe, Jose C Martins
    posted to acids amino effect mutantion single by paulschlesinger on 2007-10-19 00:16:48 as **
  • Computational Modeling of the Optical Rotation of Amino Acids: A New Look at an Old Rule for pH Dependence of Optical Rotation
    J. Am. Chem. Soc. (11 March 2008)
    by MD Kundrat, J Autschbach
    posted to acids amino optical ph rotation by paulschlesinger on 2008-03-12 21:49:53 as **
  • Does Arginine remain protonated in the lipid membrane? Insights from microscopic pKa calculations
    Biophys. J. (16 January 2008), biophysj.107.122945.
    by Jejoong Yoo, Qiang Cui
    posted to acids amino membranes pk protein by paulschlesinger on 2008-01-24 21:16:17 as ** along with 2 people and 1 group sobolevnrm sunhwan baker-group
  • New Methods Enabling Efficient Incorporation of Unnatural Amino Acids in Yeast
    J. Am. Chem. Soc. (22 April 2008)
    by Qian Wang, Lei Wang
    posted to acid amino incorporation unnatural yeast by paulschlesinger on 2008-04-24 01:56:11 as **
  • Force Field Modeling of Amino Acid Conformational Energies
    J. Chem. Theory Comput. (18 August 2007)
    by J Kaminsky, F Jensen
    posted to acid amino field force by paulschlesinger on 2007-08-23 00:17:23 as ** along with 1 person middledomain
  • The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins
    Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12259-12264.
    by David A Beck, Darwin O Alonso, Daigo Inoyama, Valerie Daggett
    posted to acids amino angles beck08pdf phi plot psi rhamachandran by paulschlesinger on 2008-08-27 23:12:51 as ** along with 2 people phoenixzxl zwang
  • Residual colours: a proposal for aminochromography.
    Protein Eng, Vol. 10, No. 7. (July 1997), pp. 743-746.
    by WR Taylor
    posted to acid amino aminochromography colors gh1 by papatonyhill on 2006-10-20 00:36:42 as read
  • An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system.
    Proc Natl Acad Sci U S A, Vol. 99, No. 15. (23 July 2002), pp. 9715-9720.
    by D Kiga, K Sakamoto, K Kodama, T Kigawa, T Matsuda, T Yabuki, M Shirouzu, Y Harada, H Nakayama, K Takio, Y Hasegawa, Y Endo, I Hirao, S Yokoyama
    posted to acid amino cell-free eukaryotic expression germ protein unnatural wheat by Odi on 2006-05-29 13:38:07 as **
  • In vitro selection of tRNAs for efficient four-base decoding to incorporate non-natural amino acids into proteins in an Escherichia coli cell-free translation system.
    Nucleic Acids Res, Vol. 34, No. 5. (2006), pp. 1653-1662.
    by H Taira, T Hohsaka, M Sisido
    posted to acid amino cell-free ecoli non-natural system translation by Odi on 2006-05-24 12:17:48 as **
  • Amino acid stabilization for cell-free protein synthesis by modification of the Escherichia coli genome.
    Metab Eng, Vol. 6, No. 3. (July 2004), pp. 197-203.
    by N Michel-Reydellet, K Calhoun, J Swartz
    posted to acid amino cell-free ecoli expression protein by Odi on 2006-06-01 13:52:14 as ** along with 2 people JeremyZucker viktor21614
  • Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins.
    J Mol Evol, Vol. 32, No. 6. (June 1991), pp. 504-510.
    by G D'Onofrio, D Mouchiroud, B Aïssani, C Gautier, G Bernardi
    posted to acid amino codon composition correlation genes human usage by nagendraproj on 2006-12-26 06:56:20 as ***
  • The role of the codon first letter in the relationship between genomic GC content and protein amino acid composition.
    Res Microbiol, Vol. 150, No. 1. (b 1999), pp. 21-32.
    by V Wilquet, M Van de Casteele
    posted to acid amino codon composition content gc by nagendraproj on 2006-12-26 07:14:59 as **
  • Selection on Codon Usage for Error Minimization at the Protein Level
    Journal of Molecular Evolution, Vol. V59, No. 3. (2004), pp. 400-415.
    by Marco Archetti
    posted to usage preference codon amino acid by nagendraproj on 2007-01-25 06:16:34 as ****
  • Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria
    Genetica, Vol. V102-103, No. 0. (16 March 1998), pp. 383-391.
    by Xun Gu, David Hewett-Emmett, Wen-Hsiung Li
    posted to protein pressure mutation hydrophobicity correlation composition between amino acid by nagendraproj on 2007-01-25 05:59:32 as ****
  • Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species.
    Biochem Biophys Res Commun, Vol. 315, No. 4. (19 March 2004), pp. 1097-1103.
    by D Bharanidharan, GR Bhargavi, K Uthanumallian, N Gautham
    posted to acid amino composition correlation frequencies nucleotide by nagendraproj on 2006-12-26 07:33:21 as *****
  • A universal trend of amino acid gain and loss in protein evolution
    Nature, Vol. aop, No. current. (19 January 2005)
    by King K Jordan, Fyodor A Kondrashov, Ivan A Adzhubei, Yuri I Wolf, Eugene V Koonin, Alexey S Kondrashov, Shamil Sunyaev
    posted to acid amino composition evolution protein by nagendranow on 2007-09-30 09:41:24 as **** along with 3 people karbak gisle michaelbarton
  • Linguistic mechanism of the evolution of amino acid frequencies and genomic GC content
    (6 Dec 2006)
    by Dirson J Li
    posted to acid amino content evolution frequency gc by nagendranow on 2007-09-24 09:34:31 as *****
  • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    Genome Biology, Vol. 2, No. 4. (2001), pp. research0010.1-research0010.13.
    by Robin Knight, Stephen Freeland, Laura Landweber
    posted to acid amino composition gc genome mutation selection by nagendranow on 2007-09-27 22:31:42 as **** along with 2 people nagendraproj karfunkel
  • Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria
    Genetica, Vol. 102-103, No. 0. (16 March 1998), pp. 383-391.
    by Xun Gu, David Hewett-Emmett, Wen-Hsiung Li
    posted to acid amino composition mutation pressure by nagendranow on 2007-09-25 09:54:20 as **
  • Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis
    Gene, Vol. 297, No. 1-2. (4 September 2002), pp. 51-60.
    by Fredj Tekaia, Edouard Yeramian, Bernard Dujon
    posted to acid amino analysis composition genome statistical by nagendranow on 2007-09-27 22:12:45 as ***** along with 1 person neils
  • Relation between amino acid composition and cellular location of proteins
    Journal of Molecular Biology, Vol. 266, No. 3. (28 February 1997), pp. 594-600.
    by Juan Cedano, Patrick Aloy, Josep A Perez-Pons, Enrique Querol
    posted to acid amino cellular composition location protein by nagendranow on 2007-09-27 22:05:00 as **
  • An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices
    BMC Bioinformatics, Vol. 7 (03 July 2006), 329.
    by Blazej Bulka, Marie Desjardins, Stephen J Freeland
    posted to acid amino code evolution genetic by msierk on 2006-07-12 16:04:37 as **
  • Proteins of the same fold and unrelated sequences have similar amino acid composition.
    Proteins (24 March 2006)
    by Yanay Ofran, Hanah Margalit
    posted to acid amino composition fold protein sequence by msierk on 2006-06-13 19:09:32 as *** along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
  • Proteomics/genomics and signaling in lymphocytes
    Current Opinion in Immunology, Vol. 16, No. 3. (June 2004), pp. 337-344.
    by Bernd Wollscheid, Julian D Watts, Ruedi Aebersold
    posted to acids affinity amino cell coded culture icat in interference isotope labeling purification rna rnai silac stable tag tandem tap with by marie-aline on 2007-08-28 12:58:44 as read along with 1 person and 1 group Fsilvestre ecotoxurbo
  • Rapid analysis of taurine in energy drinks using amino acid analyzer and Fourier transform infrared (FTIR) spectroscopy as basis for toxicological evaluation
    Amino Acids, Vol. 33, No. 3. (September 2007), pp. 451-457.
    by Triebel, , Sproll, , Reusch, , Godelmann, , Lachenmeier,
    posted to acid amino analyzer drink energy ftir spectroscopy taurine by Lachenmeier on 2008-02-04 17:13:36 as read
  • The Protein Information Resource.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 345-347.
    by CH Wu, LS Yeh, H Huang, L Arminski, J Castro-Alvear, Y Chen, Z Hu, P Kourtesis, RS Ledley, BE Suzek, CR Vinayaka, J Zhang, WC Barker
    posted to acid amino animals bibliographic databases internet protein sequence by incovoma on 2007-07-29 20:09:57 as ** along with 1 person and 1 group kracher Immunoinformatics
  • The Ensembl Automatic Gene Annotation System
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 942-950.
    by V Curwen, E Eyras, TD Andrews, L Clarke, E Mongin, SMJ Searle, M Clamp
    posted to acid alignment amino animals anopheles automation biology caenorhabditis computational dna dosage expressed gene genes genome helminth homology human humans insect mice of predictive proteins pseudogenes rats regions repeat sequence sequences software tags tandem tests untranslated value by incovoma on 2007-07-29 20:48:58 as ** along with 3 people and 1 group indigoviolet nicholso maximilianh EisenLab
  • Flexible sequence similarity searching with the FASTA3 program package.
    Methods Mol Biol, Vol. 132 (2000), pp. 185-219.
    by WR Pearson
    posted to acid alignment amino and data database evolution homology information management molecular retrieval sequence storage systems by incovoma on 2007-07-29 21:02:25 as **
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Bairoch, R Apweiler, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to acid amino databases integration interface protein proteins sequence swissprot systems user-computer by incovoma on 2007-07-13 12:26:22 as ** along with 7 people Cortel kuhn dullhunk fisherp happy_manatee myui cjeans
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J Mol Biol, Vol. 48, No. 3. (March 1970), pp. 443-453.
    by SB Needleman, CD Wunsch
    posted to acid alignment amino computers global hemoglobins methods muramidase myoglobin probability ribonucleases sequence by incovoma on 2007-07-30 10:17:46 as ** along with 6 people jwm dgront rabio yylin newton1234 Ema
  • SIMAP--The similarity matrix of proteins.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by R Arnold, T Rattei, P Tischler, MD Truong, V Stümpflen, W Mewes
    posted to acid alignment amino databases homology interface internet protein sequence simap software user-computer by incovoma on 2007-07-13 13:33:38 as ** along with 2 people robert sgoetz
  • SIMAP: the similarity matrix of proteins.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by T Rattei, R Arnold, P Tischler, D Lindner, V Stümpflen, HW Mewes
    posted to acid alignment amino databases homology interface internet protein sequence software user-computer by incovoma on 2007-07-13 13:31:23 as ** along with 1 person kuhn
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to acid algorithms amino base blast databases factual homology mutation nucleic sensitivity sequence software specificity by incovoma on 2007-07-13 10:36:45 as ** along with 45 people and 6 groups pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007), pp. D61-D65.
    by KD Pruitt, T Tatusova, DR Maglott
    posted to acid amino analysis base control databases dna genome interface internet library medicine messenger national nucleic of protein quality reference rna sequence standards states united us user-computer by incovoma on 2007-07-13 12:34:18 as ** along with 4 people and 1 group kuhn jjray indigoviolet ninch EisenLab
  • Genetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetases in multicellular eucaryotes.
    J Biol Chem, Vol. 273, No. 42. (16 October 1998), pp. 27580-27586.
    by JD Johnson, JG Mehus, K Tews, BI Milavetz, DO Lambeth
    posted to acid amino analysis animals cells cloning columbidae conformation data distribution dna eukaryotic evolution expressed homology humans ligases mice molecular phylogeny protein sequence species specificity succinate-coa swine tags tissue by incovoma on 2007-07-23 16:20:34 as **
  • Amino acids and mitochondrial biogenesis.
    The American journal of cardiology, Vol. 101, No. 11A. (2 June 2008)
    by E Nisoli, V Cozzi, MO Carruba
    posted to amino biogenesis mitochondria by HEIRS on 2008-07-11 00:58:25 as *** along with 1 group HEIRS - Environmental Illness Research
  • Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef.
    Nat Med, Vol. 5, No. 11. (November 1999), pp. 1270-1276.
    by DT Evans, DH O'Connor, P Jing, JL Dzuris, J Sidney, J da Silva, TM Allen, H Horton, JE Venham, RA Rudersdorf, T Vogel, CD Pauza, RE Bontrop, R DeMars, A Sette, AL Hughes, DI Watkins
    posted to acid amino hiv selection by breden to the group FAB-lab on 2006-06-01 06:27:13 as ** along with 1 group SFUAntibodyResearch
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