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Tag alignments [12 articles]

Recent papers classified by the tag alignments.
  • Multiple sequence alignment in phylogenetic analysis.
    Mol Phylogenet Evol, Vol. 16, No. 3. (September 2000), pp. 317-330.
    by A Phillips, D Janies, W Wheeler
    posted to alignments and homology pairwise by ziquje on 2005-05-16 16:50:18 as ** along with 1 person stormybriggs
  • Pure multiple RNA secondary structure alignments: a progressive profile approach.
    IEEE/ACM Trans Comput Biol Bioinform, Vol. 1, No. 1. (r 2004), pp. 53-62.
    by M Höchsmann, B Voss, R Giegerich
    posted to alignments rna_forester secondary_structure by raylim on 2007-09-11 05:59:50 as ** along with 1 person emidio_capriotti
  • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by M Suyama, D Torrents, P Bork
    posted to alignments codon pal2nal phylogenetic r1 software by pv on 2007-03-19 12:09:03 as ** along with 1 person bluesky2006
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to alignments blast by marti on 2008-01-24 14:37:42 as ** along with 41 people and 5 groups granujilla benwei ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Analysis and prediction of functional sub-types from protein sequence alignments
    Journal of Molecular Biology, Vol. 303, No. 1. (13 October 2000), pp. 61-76.
    by Sridhar S Hannenhalli, Robert B Russell
    posted to prediction msa hmm alignments by marti on 2008-05-07 18:00:32 as *** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • SAD--a normalized structural alignment database: improving sequence-structure alignments.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2333-2344.
    by B Marsden, R Abagyan
    posted to alignments sequence structure by marti on 2008-01-24 12:06:17 as ** along with 1 person dgront
  • Matt: Local Flexibility Aids Protein Multiple Structure Alignment.
    PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008)
    by Matthew Menke, Bonnie Berger, Lenore Cowen
    posted to alignments flexibility structure by marti on 2008-01-28 17:04:59 as *** along with 2 people carlk dimka
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet on 2005-11-13 03:10:05 as read along with 5 people and 2 groups ihpark tuck lusk Garamonfok cisevol EisenLab cis-regulatory-evolution
  • Bioinformatics: an introduction for computer scientists
    ACM Comput. Surv., Vol. 36, No. 2. (June 2004), pp. 122-158.
    by Jacques Cohen
    posted to alignments and biological biology cell computer dna dynamic hidden-markov-models microarray modeling molecular parsing phylogenetic programming protein rna sequences simulation structure trees by afragop to the group Complex_Real_Networks on 2006-02-25 20:48:45 as **** along with 11 people and 2 groups bozdagd quianominorleo neilernst malenitah2 asilva Ayest smithco eweaver bigbossman mmuecke sugarexpletive CHISEL Plant-Tissue-Simulation
  • The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods.
    Comput Biol Chem, Vol. 28, No. 5-6. (December 2004), pp. 351-366.
    by VA Simossis, J Heringa
    posted to alignments bioinformatics gapped msa multiple positions prediction secondary sequence structure by feenstra on 2006-11-29 09:26:00 as *****
  • QUASARscoring and ranking of sequencestructure alignments
    Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4425-4426.
    by Fabian Birzele, Jan E Gewehr
    posted to alignments score sequence-structure by dimka on 2006-01-19 18:39:09 as ** along with 1 person msierk
  • Alignment of three-dimensional molecules using an image recognition algorithm
    Journal of Molecular Graphics and Modelling, Vol. 23, No. 2. (October 2004), pp. 199-209.
    by Nicola J Richmond, Peter Willett, Robert D Clark
    posted to alignments molecules small structural by dario on 2006-07-11 21:23:02 as ** along with 2 people daevans superpyrin
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