registrieren | anmelden | FAQ      [?] 

Tag 16s [119 articles]

Recent papers classified by the tag 16s.
RIS BibTeX RTF/PDF
  • Abundance and diversity of microbial life in ocean crust
    Nature, Vol. 453, No. 7195., pp. 653-656.
    by Cara M Santelli, Beth N Orcutt, Erin Banning, Wolfgang Bach, Craig L Moyer, Mitchell L Sogin, Hubert Staudigel, Katrina J Edwards
    posted to 16s bacteria card-fish ocean by vaulot on 2008-06-21 00:40:50 as read along with 1 person and 4 groups jlgreen Microbial-Ecology Papers recommended by the Roscoff Plankton Group iSEEM Green Lab
  • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.
    The ISME journal (8 May 2008)
    by Stephen J J Bent, Larry J J Forney
    posted to statistics diversity 16s by vaulot on 2008-09-12 20:45:27 as ** along with 5 people and 4 groups druvus jdelcampo jlgreen djkt skembel Papers recommended by the Roscoff Plankton Group Microbial-Ecology Green Lab iSEEM
  • Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
    Proceedings of the National Academy of Sciences (8 May 2008), 0711303105.
    by Annelie Pernthaler, Anne E Dekas, Titus C Brown, Shana K Goffredi, Tsegereda Embaye, Victoria J Orphan
    posted to 16s bacteria fish metagenomics methods probes by vaulot on 2008-05-25 07:33:33 as ** along with 1 person and 2 groups skato_toyaku Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes
    Systematic and Applied Microbiology, Vol. In Press, Corrected Proof
    by Jörg Peplies, Renzo Kottmann, Wolfgang Ludwig, Frank O Glöckner
    posted to sofware phylogeny clone_libraries 16s by vaulot on 2008-09-17 12:49:31 as ** along with 2 groups Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.
    by Jed A Fuhrman, Joshua A Steele, Ian Hewson, Michael S Schwalbach, Mark V Brown, Jessica L Green, James H Brown
    posted to 16s bacteria diversity by vaulot on 2008-07-17 10:42:35 as *** along with 5 people and 4 groups paulm skembel skato_toyaku jlgreen djkt Green Lab iSEEM Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
    posted to 16s bacteria fish genome wga by vaulot on 2008-05-25 07:25:01 as read along with 2 people and 2 groups Olaf_Ilzins vrich Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
    Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120.
    by Zongzhi Liu, Todd Z Desantis, Gary L Andersen, Rob Knight
    posted to pyrosequencing bacteria 16s by vaulot on 2008-10-17 14:01:24 as ** along with 3 people and 3 groups sconlan ojabado jlgreen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
  • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.
    Environmental microbiology (18 February 2008)
    by Heike Stevens, Osvaldo Ulloa
    posted to 16s bacteria chile diversity omz pacific by vaulot on 2008-04-30 07:03:43 as *** along with 1 person and 4 groups mjetten anammox microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations.
    Applied and environmental microbiology, Vol. 72, No. 6. (June 2006), pp. 4293-4301.
    by MG Kalyuzhnaya, R Zabinsky, S Bowerman, DR Baker, ME Lidstrom, L Chistoserdova
    posted to 16s bacteria fish flow_cytometry wga by vaulot on 2008-05-25 07:18:54 as ** along with 2 groups Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566.
    by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A Eisen
    posted to sofware clone_libraries blast bioinformatics 16s by vaulot on 2008-09-19 20:44:55 as *** along with 4 people and 3 groups sriesenfeld druvus skato_toyaku djkt Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
  • Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000m vertical profile in the North Pacific Subtropical Gyre
    Environmental Microbiology, Vol. 10, No. 9. (September 2008), pp. 2313-2330.
    by Pham, D Vinh, Konstantinidis, T Konstantinos, Palden, Tsultrim, Delong, F Edward
    posted to pacific metagenomics clone_libraries bacteria 16s by vaulot on 2008-09-10 15:58:24 as **** along with 1 person and 3 groups skembel iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
    Science, Vol. 322, No. 5899. (10 October 2008), pp. 275-278.
    by Dylan Chivian, Eoin L Brodie, Eric J Alm, David E Culley, Paramvir S Dehal, Todd Z Desantis, Thomas M Gihring, Alla Lapidus, Li-Hung Lin, Stephen R Lowry, Duane P Moser, Paul M Richardson, Gordon Southam, Greg Wanger, Lisa M Pratt, Gary L Andersen, Terry C Hazen, Fred J Brockman, Adam P Arkin, Tullis C Onstott
    posted to sanger microbial diversity 454 16s by skembel on 2008-11-15 01:01:56 as ** along with 8 people and 4 groups lflorez claymans vaulot djkt Katje dinnes neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM microbiology_nijmegen
  • Urban aerosols harbor diverse and dynamic bacterial populations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 1. (2 January 2007), pp. 299-304.
    by EL Brodie, TZ DeSantis, JP Parker, IX Zubietta, YM Piceno, GL Andersen
    posted to 16s by skembel on 2008-11-24 00:19:31 as ** along with 3 people and 7 groups HEIRS mcox elbrodie HEIRS Respiratory Health and Illness HEIRS Pulmonology HEIRS Immunology and Autoimmune Diseases HEIRS - Environmental Illness Research HEIRS Environmental Health and Hazards HEIRS Environmental Ecology and related health hazards HEIRS Bacteriology
  • Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms
    Microbial Ecology, Vol. 35, No. 1. (24 January 1998), pp. 1-21.
    by IM Head, JR Saunders, RW Pickup
    posted to microbial diversity 16s by skato_toyaku on 2008-09-27 10:18:28 as **
  • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
    Applied and environmental microbiology, Vol. 72, No. 10. (October 2006), pp. 6773-6779.
    by PD Schloss, J Handelsman
    posted to 16s algorithm clustering ecology environmental by sconlan on 2008-07-07 17:31:12 as ** along with 1 person and 1 group djkt iSEEM
  • Evaluating different approaches that test whether microbial communities have the same structure.
    The ISME journal, Vol. 2, No. 3. (March 2008), pp. 265-275.
    by PD Schloss
    posted to 16s bacteria ecology metagenomics by sconlan on 2008-07-03 21:08:53 as ** along with 2 people and 1 group skembel djkt iSEEM
  • The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
    PLoS Biology, Vol. 6, No. 11. (1 November 2008), e280.
    by Les Dethlefsen, Sue Huse, Mitchell L Sogin, David A Relman
    posted to sequencing hmp environmental ecology bacteria antibiotic 454 16s by sconlan on 2008-12-02 21:57:11 as ** along with 5 people and 1 group jmeppley treangen skembel maggiecontreras djkt iSEEM
  • Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
    PLoS Genet, Vol. 4, No. 11. (21 November 2008), e1000255.
    by Susan M Huse, Les Dethlefsen, Julie A Huber, David M Welch, David A Relman, Mitchell L Sogin
    posted to sequencing environmental ecology bacteria 454 16s by sconlan on 2008-12-02 21:54:29 as read along with 3 people and 1 group azazello skembel djkt iSEEM
  • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.
    Applied and environmental microbiology, Vol. 71, No. 3. (March 2005), pp. 1501-1506.
    by PD Schloss, J Handelsman
    posted to 16s algorithm bacteria clustering otu phylogeny by sconlan on 2008-07-07 17:31:58 as ** along with 3 people and 1 group melissa_wos mcox djkt iSEEM
  • UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
    Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 8228-8235.
    by Catherine Lozupone, Rob Knight
    posted to 16s algorithm clustering ecology environmental by sconlan on 2008-07-07 17:24:51 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library
    Nucl. Acids Res. (5 August 2008), gkn496.
    by Chaysavanh Manichanh, Charles E Chapple, Lionel Frangeul, Karine Gloux, Roderic Guigo, Joel Dore
    posted to statistics metagenomics ecology 16s by sconlan on 2008-12-12 20:07:40 as ** along with 3 people and 1 group bluto skembel druvus iSEEM
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to 16s hmp metagenomics skin by sconlan on 2008-07-03 20:23:23 as ** along with 3 people and 1 group aprasad caseybrown djkt iSEEM
  • Estimation of 16S rRNA gene copy number in several probiotic Lactobacillus strains isolated from the gastrointestinal tract of chicken.
    FEMS microbiology letters (14 August 2008)
    by Chin Mei M Lee, Chin Chin C Sieo, Norhani Abdullah, Yin Wan W Ho
    posted to 16s copy gene lactobacillus number probiotic by rvht on 2008-08-20 13:17:47 as **
  • Demonstrating Lambda Calculus Reduction
    by Peter S Department
    posted to 16s lambda-calculus by pintman on 2006-01-16 18:52:13 as *** along with 1 person yallop
  • Bacterial genotyping by 16S rRNA mass cataloging
    BMC Bioinformatics, Vol. 7 (23 June 2006), 321.
    by George W Jackson, Roger J Mcnichols, George E Fox, Richard C Willson
    posted to 16s by papamicd on 2006-06-28 00:26:47 as ** along with 1 person nghoffma
  • Evaluations of Different Hypervariable Regions of Archaeal 16S rRNA Genes in Profiling of Methanogens by Archaea-Specific PCR and Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 889-893.
    by Zhongtang Yu, Ruben Garcia-Gonzalez, Floyd L Schanbacher, Mark Morrison
    posted to 16s dgge microbial_diversity by Olaf_Ilzins on 2008-06-13 15:51:31 as **
  • Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    Appl. Environ. Microbiol., Vol. 68, No. 5. (1 May 2002), pp. 2391-2396.
    by Peter H Janssen, Penelope S Yates, Bronwyn E Grinton, Paul M Taylor, Michelle Sait
    posted to 16s cultures by Olaf_Ilzins on 2008-04-29 15:37:46 as **
  • Laboratory Cultivation of Widespread and Previously Uncultured Soil Bacteria
    Appl. Environ. Microbiol., Vol. 69, No. 12. (1 December 2003), pp. 7210-7215.
    by Shayne J Joseph, Philip Hugenholtz, Parveen Sangwan, Catherine A Osborne, Peter H Janssen
    posted to 16s cultures by Olaf_Ilzins on 2008-04-29 15:35:35 as **
  • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.
    Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8966-8969.
    by SG Acinas, R Sarma-Rupavtarm, V Klepac-Ceraj, MF Polz
    posted to 16s indicators validation by Olaf_Ilzins on 2008-04-30 20:04:53 as ** along with 1 person vrich
  • Quantitative and Qualitative beta Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 5. (1 March 2007), pp. 1576-1585.
    by Catherine A Lozupone, Micah Hamady, Scott T Kelley, Rob Knight
    posted to 16s microbial_diversity phylogeny by Olaf_Ilzins on 2008-05-06 21:17:09 as ** along with 2 people and 1 group liucun djkt iSEEM
  • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
    Appl Environ Microbiol, Vol. 71, No. 2. (February 2005), pp. 826-834.
    by KE Davis, SJ Joseph, PH Janssen
    posted to 16s cultures by Olaf_Ilzins on 2008-04-29 15:41:35 as ** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies
    Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 278-288.
    by Rebecca J Case, Yan Boucher, Ingela Dahllof, Carola Holmstrom, Ford W Doolittle, Staffan Kjelleberg
    posted to 16s microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-06-09 16:02:23 as **
  • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.
    J Bacteriol, Vol. 186, No. 9. (May 2004), pp. 2629-2635.
    by SG Acinas, LA Marcelino, V Klepac-Ceraj, MF Polz
    posted to 16s bacterial_taxonomy microbial_diversity molecular_techniques statistics validation by Olaf_Ilzins on 2008-04-30 20:09:54 as ** along with 1 person mcox
  • Comparisons of Different Hypervariable Regions of rrs Genes for Use in Fingerprinting of Microbial Communities by PCR-Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4800-4806.
    by Zhongtang Yu, Mark Morrison
    posted to 16s dgge microbial_diversity molecular_techniques validation by Olaf_Ilzins on 2008-06-13 15:59:27 as **
  • notes Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes
    Int J Syst Bacteriol, Vol. 48, No. 3. (1 July 1998), pp. 813-819.
    by S Yamamoto, S Harayama
    posted to 16s by nghoffma on 2006-10-28 19:23:13 as **
  • notes At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies
    Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 7724-7736.
    by Kevin E Ashelford, Nadia A Chuzhanova, John C Fry, Antonia J Jones, Andrew J Weightman
    posted to 16s databases public by nghoffma on 2006-10-28 19:29:26 as ***** along with 1 person mcox
  • Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes.
    FEMS Microbiol Lett, Vol. 228, No. 1. (7 November 2003), pp. 45-49.
    by T Coenye, P Vandamme
    posted to 16s by nghoffma on 2008-02-28 15:25:56 as **
  • The role of 16S rRNA gene sequencing in identification of microorganisms misidentified by conventional methods.
    J Clin Microbiol, Vol. 43, No. 12. (December 2005), pp. 6123-6125.
    by CA Petti, CR Polage, P Schreckenberger
    posted to 16s clinical by nghoffma on 2006-10-30 15:20:43 as **
  • Intragenomic heterogeneity and intergenomic recombination among Vibrio parahaemolyticus 16S rRNA genes.
    Microbiology, Vol. 153, No. Pt 8. (August 2007), pp. 2640-2647.
    by E Harth, J Romero, R Torres, RT Espejo
    posted to 16s by nghoffma on 2008-02-28 15:25:21 as **
  • Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes
    FEMS Microbiology Letters, Vol. 228, No. 1. (7 November 2003), pp. 45-49.
    by Tom Coenye, Peter Vandamme
    posted to 16s pairwise by nghoffma on 2006-10-28 19:03:03 as **
  • NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, R Phan, GL Andersen
    posted to 16s by nghoffma on 2006-08-30 16:38:48 as ** along with 3 people and 1 group jmeppley mcox djkt iSEEM
  • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    Nucl. Acids Res. (12 November 2008), gkn879.
    by JR Cole, Q Wang, E Cardenas, J Fish, B Chai, RJ Farris, AS Kulam-Syed-Mohideen, DM Mcgarrell, T Marsh, GM Garrity, JM Tiedje
    posted to software sequence ribosome database bioinformatics 16s by neils on 2008-11-13 10:38:27 as **
  • Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor.
    Environmental microbiology (9 May 2008)
    by Zhe-Xue X Quan, Sung-Keun K Rhee, Jian-E E Zuo, Yang Yang, Jin-Woo W Bae, Ja Ryeong R Park, Sung-Taik T Lee, Yong-Ha H Park
    posted to 16s 23s anammox asiatica hydrazine hzo jettenia rrna by mjetten on 2008-06-03 12:38:13 as read along with 2 groups anammox microbiology_nijmegen
  • 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection.
    Environmental microbiology, Vol. 3, No. 7. (July 2001), pp. 450-459.
    by M Schmid, S Schmitz-Esser, M Jetten, M Wagner
    posted to 16s 23s anammox its oygen by mjetten on 2008-04-11 19:01:57 as ** along with 2 groups anammox microbiology_nijmegen
  • Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents.
    The ISME journal (31 July 2008)
    by Nathalie Byrne, Marc Strous, Valentin Crépeau, Boran Kartal, Jean-Louis L Birrien, Markus Schmid, Françoise Lesongeur, Stefan Schouten, Andrea Jaeschke, Mike Jetten, Daniel Prieur, Anne Godfroy
    posted to 15n 16s activity anammox dinitrogen gas ladderane lipids rrna thermophilic by mjetten on 2008-08-04 20:40:07 as read
  • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Dagmar Woebken, Phyllis Lam, Marcel MM Kuypers, Wajih, Boran Kartal, Marc Strous, Mike SM Jetten, Bernhard M Fuchs, Rudolf Amann
    posted to 16s anammox diversity its minimum oxygen zone by mjetten on 2008-06-03 12:32:04 as **
  • Obesity alters gut microbial ecology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 11070-11075.
    by RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon
    posted to 16s gut obesity by michC on 2007-05-18 18:51:41 as read along with 2 people and 1 group Zephyrus marimo MathBio
  • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.
    Applied and environmental microbiology, Vol. 67, No. 9. (September 2001), pp. 4374-4376.
    by DR Singleton, MA Furlong, SL Rathbun, WB Whitman
    posted to 16s clone comparative diversity library statistics by mcox on 2008-05-19 21:54:18 as ** along with 1 person and 1 group djkt iSEEM
  • Remarkable Archaeal Diversity Detected in a Yellostone National Park Hot Spring Environment
    Proceedings of the National Academy of Sciences, Vol. 91, No. 5. (1 March 1994), pp. 1609-1613.
    by SM Barns, RE Fundyga, MW Jeffries, NR Pace
    posted to 16s diversity ecology yellowstone by mcox on 2008-05-12 18:33:14 as ** along with 1 person cbg
  • A quantitative map of nucleotide substitution rates in bacterial rRNA.
    Nucleic acids research, Vol. 24, No. 17. (1 September 1996), pp. 3381-3391.
    by Y Van de Peer, S Chapelle, R De Wachter
    posted to 16s bioinformatics diversity rrna by mcox on 2008-05-15 16:02:49 as **
    • Bemerkung: Sie können diese Seite wie folgt zitieren: http://www.citeulike.org/tag/16s

    Result page: 1 2 3 Next RIS BibTeX RTF/PDF
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.