djkts profile

Recent Activity

• 20:14: posted Significant contribution of Archaea to extant biomass in marine subsurface sediments

• 19:18: posted Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster
• 02:15: posted Gene Dosage and Gene Duplicability

• 21:19: posted Reduced purifying selection prevails over positive selection in human copy number variant evolution
• 21:16: posted Integrating biological data - the Distributed Annotation System
• 21:15: posted Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans

• 18:22: posted Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
• 18:13: posted Binning sequences using very sparse labels within a metagenome
• 17:55: posted The Airborne Metagenome in an Indoor Urban Environment
• 17:26: posted Genetic Variation in an Individual Human Exome
• 17:24: posted Selective Constraints in Experimentally Defined Primate Regulatory Regions
• 02:02: posted A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

• 21:09: posted A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA

• 17:02: posted The relationship between homozygosity and the frequency of the most frequent allele
• 17:00: posted Comparative analysis of testis protein evolution in rodents
• 16:57: posted Cut thy Neighbor: Cyclic Birth and Death of Recombination Hotspots via Genetic Conflict
• 16:56: posted Bayesian QTL Mapping for Multiple Traits
• 16:54: posted An empirical test for branch-specific positive selection

• 17:19: posted Segment-based multiple sequence alignment
• 17:17: posted Analysis of segmental duplications via duplication distance
• 17:13: posted Predicting Functional Regulatory Polymorphisms.
• 05:18: posted Metabolic changes in schizophrenia and human brain evolution
• 05:17: posted The ethics of characterizing difference: guiding principles on using racial categories in human genetics

• 19:21: posted Evolutionary Convergence on Highly-Conserved 3′ Intron Structures in Intron-Poor Eukaryotes and Insights into the Ancestral Eukaryotic Genome
• 02:28: posted Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
• 02:24: posted Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
• 02:14: posted The rational exploration of microbial diversity
• 02:01: posted The evolutionary ecology of metacommunities.
• 01:37: posted Context-Dependent Mutation Rates May Cause Spurious Signatures of a Fixation Bias Favoring Higher GC-Content in Humans
• 01:33: posted Context dependence, ancestral misidentification, and spurious signatures of natural selection

• 16:53: posted Evolution of the mammalian transcription factor binding repertoire via transposable elements
• 16:50: posted Is there an acceleration of the CpG transition rate during the mammalian radiation?
• 16:48: posted CpG Dinucleotides and the Mutation Rate of Non-CpG DNA
• 16:44: posted The functional repertoires of metazoan genomes
• 16:33: posted Genome-scale DNA methylation maps of pluripotent and differentiated cells
• 16:30: posted Escape from adaptive conflict after duplication in an anthocyanin pathway gene

• 19:15: posted DupMasker: A tool for annotating primate segmental duplications
• 19:14: posted A novel DNA sequence database for analyzing human demographic history
• 19:12: posted Inferring causal relationships among different histone modifications and gene expression
• 19:09: posted Identification of ancient remains through genomic sequencing
• 18:26: posted Patterns of Positive Selection in Six Mammalian Genomes
• 16:42: posted Evidence of Global Chlorophyll d

• 16:46: posted Origin of introns by [`]intronization' of exonic sequences
• 16:45: posted Rapidly regulated genes are intron poor

• 21:16: posted Multivariate analyses in microbial ecology
• 21:13: posted Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution
• 21:10: posted The Human Microbiome Project
• 20:46: posted Biodiversity and biogeography of phages in modern stromatolites and thrombolites
• 20:44: posted From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
• 20:41: posted Spatial scaling of microbial biodiversity
• 20:36: posted Tracking microbial biodiversity through molecular and genomic ecology.
• 20:28: posted Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
• 20:26: posted Comparative Metagenomics of Microbial Communities
• 20:24: posted Community genomics in microbial ecology and evolution
• 20:12: posted Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
• 20:03: posted Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
• 20:01: posted Accurate phylogenetic classification of variable-length DNA fragments
• 19:58: posted Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
• 19:48: posted The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.

• 23:25: posted The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
• 23:22: posted Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies

• 23:21: posted Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
• 23:16: posted Viral population estimation using pyrosequencing.
• 23:14: posted Inference of population genetic parameters in metagenomics: A clean look at messy data
• 23:12: posted Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
• 23:08: posted FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
• 23:03: posted The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
• 22:43: posted Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.
• 22:41: posted Predicting prokaryotic ecological niches using genome sequence analysis.
• 19:04: posted Spatial scaling of microbial eukaryote diversity
• 19:03: posted The diversity and biogeography of soil bacterial communities.
• 19:02: posted Larger Islands House More Bacterial Taxa
• 19:01: posted A taxa-area relationship for bacteria
• 19:00: posted The application of rarefaction techniques to molecular inventories of microbial diversity.
• 18:59: posted Quantitative and Qualitative {beta} Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
• 18:58: posted Global patterns in bacterial diversity
• 18:56: posted What is the extent of prokaryotic diversity?
• 18:53: posted Bioinformatics for whole-genome shotgun sequencing of microbial communities.
• 18:51: posted A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
• 18:50: posted Evaluating different approaches that test whether microbial communities have the same structure.
• 18:48: posted An application of statistics to comparative metagenomics.
• 18:47: posted The marine viromes of four oceanic regions.
• 18:45: posted UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
• 18:45: posted Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
• 18:44: posted Testing for Differentiation of Microbial Communities Using Phylogenetic Methods: Accounting for Uncertainty of Phylogenetic Inference and Character State Mapping
• 18:42: posted Introducing TreeClimber, a test to compare microbial community structures.
• 18:41: posted Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.
• 18:39: posted Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries
• 18:30: posted Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
• 18:28: posted Short pyrosequencing reads suffice for accurate microbial community analysis
• 18:27: posted Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
• 18:25: posted EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.
• 18:24: posted Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny.
• 18:23: posted FastGroup: a program to dereplicate libraries of 16S rDNA sequences.
• 18:21: posted Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.
• 18:20: posted NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
• 18:14: posted An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
• 18:12: posted Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.
• 18:09: posted SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
• 18:08: posted Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
• 18:04: posted Species divergence and the measurement of microbial diversity
• 18:00: posted Metagenomics: application of genomics to uncultured microorganisms.
• 17:59: posted Metagenomics: genomic analysis of microbial communities.
• 01:19: joined the group iSEEM
• 01:11: invitation from jlgreen to join the group iSEEM

• 23:06: posted High-resolution mapping of meiotic crossovers and non-crossovers in yeast
• 03:21: posted Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation