Group: microbiology_nijmegen

2008-10-07

• 19:15: Katje posted Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
• 18:47: Katje posted The rational exploration of microbial diversity.

2008-10-03

• 13:34: kinestetika posted Abundance of narG, nirS, nirK, and nosZ Genes of Denitrifying Bacteria during Primary Successions of a Glacier Foreland
• 09:27: kinestetika posted Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
• 08:54: kinestetika posted Molecular Characterization of Diazotrophic and Denitrifying Bacteria Associated with Mangrove Roots

2008-10-02

• 20:18: kinestetika posted Denitrifier Community Composition along a Nitrate and Salinity Gradient in a Coastal Aquifer
• 16:35: Katje posted The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
• 10:54: Katje posted Precision proteomics: The case for high resolution and high mass accuracy
• 10:14: kinestetika posted Toward Automatic Reconstruction of a Highly Resolved Tree of Life
• 10:00: Katje posted Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

2008-10-01

• 11:12: kinestetika posted Diffusion of the Interspecies Electron Carriers H(2) and Formate in Methanogenic Ecosystems and Its Implications in the Measurement of K(m) for H(2) or Formate Uptake.
• 11:09: kinestetika posted Anaerobic biodegradation of saturated and aromatic hydrocarbons.

2008-09-30

• 07:57: fvandooren joined the group
• 07:56: Katje invited fvandooren to join the group

2008-09-29

• 08:03: Huub_odc posted High-resolution metagenomics targets specific functional types in complex microbial communities

2008-09-28

• 10:53: kinestetika posted Reduction of nitric oxide in bacterial nitric oxide reductase--a theoretical model study.
• 10:29: kinestetika posted Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.
• 10:25: kinestetika posted Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples.
• 10:24: kinestetika posted Production and consumption of nitric oxide by three methanotrophic bacteria.
• 10:20: kinestetika posted Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment.
• 10:15: kinestetika posted Intramolecular electron transfer in nitrite reductases.

2008-09-27

• 11:22: kinestetika posted Anaerobic oxidation of methane and ammonium.
• 11:02: kinestetika posted Stream denitrification across biomes and its response to anthropogenic nitrate loading
• 10:46: kinestetika posted Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico
• 10:44: kinestetika posted Microarray-Based Characterization of Microbial Community Functional Structure and Heterogeneity in Marine Sediments from the Gulf of Mexico
• 09:32: kinestetika posted Anaerobic microbial metabolism can proceed close to thermodynamic limits.
• 09:23: kinestetika posted Thermodynamics of organisms in the context of dynamic energy budget theory

2008-09-26

• 16:32: Katje posted Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads

2008-09-24

• 16:05: Katje posted Direct Nitric Oxide Detection in Aqueous Solution by Copper(II) Fluorescein Complexes
• 15:56: Katje posted Controlled Oxidation of Hydrocarbons by the Membrane-Bound Methane Monooxygenase: The Case for a Tricopper Cluster

2008-09-23

• 08:07: kinestetika posted Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase.
• 08:01: kinestetika posted Methane production and oxidation in an anoxic rice soil as influenced by inorganic redox species.
• 07:48: kinestetika posted Life in the extreme: thermoacidophilic methanotrophy.

2008-09-22

• 21:07: kinestetika posted Denitrification with methane as electron donor in oxygen-limited bioreactors.
• 08:49: kinestetika posted Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

2008-09-21

• 20:05: kinestetika posted Optimality of the genetic code with respect to protein stability and amino-acid frequencies.
• 19:40: kinestetika posted An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms

2008-09-12

• 14:15: kinestetika posted On the reproducibility of microcosm experiments - different community composition in parallel phototrophic biofilm microcosms
• 10:31: kinestetika posted Snowball Earth termination by destabilization of equatorial permafrost methane clathrate
• 10:27: kinestetika posted Orbital and millennial-scale features of atmospheric CH4 over the past 800,000[thinsp]years
• 09:06: mjetten posted Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.
• 09:05: mjetten posted Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem.
• 09:04: mjetten posted Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.

2008-09-10

• 20:09: kinestetika posted The Microbial Engines That Drive Earth's Biogeochemical Cycles
• 08:54: kinestetika posted Getting a Handle on the Role of Coenzyme M in Alkene Metabolism

2008-09-09

• 12:49: Katje posted Network Relationships of Bacteria in a Stable Mixed Culture

2008-09-08

• 21:56: kinestetika posted Growth yields in bacterial denitrification and nitrate ammonification.
• 12:28: kinestetika posted Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants.
• 12:22: kinestetika posted Wastewater treatment: a model system for microbial ecology
• 11:14: kinestetika posted Cytometric bead array: a multiplexed assay platform with applications in various areas of biology.
• 11:06: kinestetika posted Isolation of small-subunit rRNA for stable isotopic characterization
• 10:59: kinestetika posted Comparison of rRNA and polar-lipid-derived fatty acid biomarkers for assessment of 13C-substrate incorporation by microorganisms in marine sediments.
• 10:51: kinestetika posted Elucidation of nitrate reduction pathways in anaerobic bioreactors using a stable isotope approach.
• 10:43: kinestetika posted A practical kinetic model that considers endproduct inhibition in anaerobic digestion processes by including the equilibrium constant.
• 10:33: kinestetika posted Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas
• 09:27: kinestetika posted Biology's next revolution
• 09:00: kinestetika posted Revisiting the stringent response, ppGpp and starvation signaling.

2008-09-07

• 20:14: kinestetika posted Calorimetric bioprocess monitoring by small modifications to a standard bench-scale bioreactor.
• 20:06: kinestetika posted A metabolic network stoichiometry analysis of microbial growth and product formation
• 19:22: kinestetika posted Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments.
• 19:18: kinestetika posted Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach.
• 15:11: kinestetika posted Environmental Genome Shotgun Sequencing of the Sargasso Sea
• 15:09: kinestetika posted Community structure and metabolism through reconstruction of microbial genomes from the environment.
• 14:58: kinestetika posted Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
• 12:00: kinestetika posted Prokaryotes: The unseen majority
• 11:58: kinestetika posted Marine viruses — major players in the global ecosystem

2008-09-03

• 16:05: Katje posted Habitat partitioning of denitrifying bacterial communities carrying nirS or nirK genes in the stratified water column of Lake Kinneret, Israel

2008-08-18

• 15:52: Katje posted Arsenic(III) Fuels Anoxygenic Photosynthesis in Hot Spring Biofilms from Mono Lake, California

2008-08-15

• 15:39: Huub_odc posted Effects of soil warming and drying on methane cycling in a northern peatland mesocosm study
• 09:56: Huub_odc posted Assessment of the positive effect of salinity on the nitrogen removal performance and microbial composition during the start-up of CANON process
• 08:58: Huub_odc posted Diurnal redox fluctuation and microbial activity in the rhizosphere of wetland plants
• 08:47: Huub_odc posted Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington
• 08:28: Huub_odc posted Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
• 08:14: Huub_odc posted Methanogenic archaea: ecologically relevant differences in energy conservation

2008-08-14

• 14:10: faluesken posted Structure of an F430 variant from archaea associated with anaerobic oxidation of methane.
• 14:10: faluesken posted A thermodynamic analysis of the anaerobic oxidation of methane in marine sediments.
• 14:01: faluesken joined the group
• 12:02: kinestetika posted Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane.
• 12:02: kinestetika posted Diversity and distribution of methanotrophic archaea at cold seeps.
• 12:01: kinestetika posted Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system.
• 12:00: kinestetika posted Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink
• 11:59: kinestetika posted In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation of methane with sulfate
• 11:58: kinestetika posted Consumption of methane and CO2 by methanotrophic microbial mats from gas seeps of the anoxic Black Sea
• 11:56: kinestetika posted On the relationship between methane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico
• 11:55: kinestetika posted Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane
• 11:53: kinestetika posted Anaerobic Methane Oxidation: Occurrence and Ecology.
• 11:52: kinestetika posted Inhibition Experiments on Anaerobic Methane Oxidation.
• 11:52: kinestetika posted Biomarker evidence for widespread anaerobic methane oxidation in Mediterranean sediments by a consortium of methanogenic archaea and bacteria. The Medinaut Shipboard Scientific Party.
• 11:49: kinestetika posted New perspectives on anaerobic methane oxidation.
• 11:48: kinestetika posted Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.
• 11:47: kinestetika posted Thermodynamic and Kinetic Requirements in Anaerobic Methane Oxidizing Consortia Exclude Hydrogen, Acetate, and Methanol as Possible Electron Shuttles.
• 11:47: kinestetika posted Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review.
• 11:45: kinestetika posted Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor.
• 11:45: kinestetika posted Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.
• 11:44: kinestetika posted Biogeochemical processes at the fringe of a landfill leachate pollution plume: potential for dissolved organic carbon, Fe(II), Mn(II), NH4, and CH4 oxidation.
• 11:43: kinestetika posted Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics
• 11:42: kinestetika posted A genomic view of methane oxidation by aerobic bacteria and anaerobic archaea.
• 11:41: kinestetika posted Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean Sea.
• 11:39: kinestetika posted Cooccurrence of aerobic and anaerobic methane oxidation in the water column of Lake Plusssee.
• 11:37: kinestetika posted Aerobic and anaerobic methanotrophs in the Black Sea water column
• 11:37: kinestetika posted Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms.
• 11:35: kinestetika posted Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea.
• 11:31: kinestetika posted Acetylene as fast food: implications for development of life on anoxic primordial Earth and in the outer solar system.
• 11:30: kinestetika posted Characterization of the thioether product formed from the thiolytic cleavage of the alkyl-nickel bond in methyl-coenzyme M reductase.
• 11:27: kinestetika posted Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4-450 m in Olkiluoto, Finland.
• 11:26: kinestetika posted Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin.
• 11:26: kinestetika posted Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin.
• 08:27: kinestetika posted How to get more out of molecular fingerprints: practical tools for microbial ecology
• 08:21: kinestetika posted Cultivation of denitrifying bacteria: optimization of isolation conditions and diversity study.

2008-08-13

• 21:31: kinestetika posted A theoretical study on the amount of ATP required for synthesis of microbial cell material.
• 21:28: kinestetika posted Comparison of maximum cell yield and maintenance coefficients in axenic cultures and activated sludge communities
• 21:20: kinestetika posted A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry.
• 19:57: kinestetika posted Why is metabolic labour divided in nitrification?
• 19:43: kinestetika posted Heat production by ruminal bacteria in continuous culture and its relationship to maintenance energy.
• 19:31: kinestetika posted Adaptations to energy stress dictate the ecology and evolution of the Archaea