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Group: Bioinformatics - with tag markov [23 articles]

Neue Artikel von Mitliedern der Gruppe Bioinformatics Gruppe with tag markov
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  • Gene identification in novel eukaryotic genomes by self-training algorithm
    Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506.
    by A Lomsadze, Ter V Hovhannisyan, YO Chernoff, M Borodovsky
    posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • A decision tree system for finding genes in DNA
    J Comput Biol, Vol. 5, No. 4. (Win 1998), pp. 667-680.
    by S Salzberg, AL Delcher, KH Fasman, J Henderson
    posted to 0001 19990311 algorithms chains decision dnaclassificationgenetics genes govt markov non-phs phs research support techniques trees us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as **
  • Interpolated Markov models for eukaryotic gene finding
    Genomics, Vol. 59, No. 1. (Jul 1999), pp. 24-31.
    by SL Salzberg, M Pertea, AL Delcher, MJ Gardner, H Tettelin
    posted to databases alternative animals chain chains chromosomesgenetics comparative 0001 19990709 algorithms alignment expression factual falciparumgenetics gene genes genome govt internet markov non-phs of phs plasmodium polymerase protozoan protozoangenetics reaction reproducibility research results reverse sequence splicing study support transcriptase us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:28 as **
  • Finding genes in DNA with a Hidden Markov Model
    J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141.
    by J Henderson, S Salzberg, KH Fasman
    posted to 0001 19970701 algorithms and animals chains comparative databases dnagenetics exons factual genes genetic govt markov models non-phs of phs reproducibility research results sensitivity software specificity study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:27 as **
  • GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders
    Nucleic Acids Res, Vol. 31, No. 13. (Jul 2003), pp. 3601-3604.
    by WH Majoros, M Pertea, C Antonescu, SL Salzberg
    posted to 0500 20030819 analysis arabidopsisgenetics cells chains dnamethods eukaryotic exons genes govt internet introns markov non-phs phs plant research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:21 as **
  • SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model
    Genome Res, Vol. 13, No. 3. (Mar 2003), pp. 496-502.
    by M Alexandersson, S Cawley, L Pachter
    posted to 0500 20030412 alignmentmethodsstatistics animals biologymethodsstatistics chains comparative computational conserved data design dna dnagenetics falciparumgenetics genes govt humans markov mice numerical phs plasmodium protozoangenetics research sequence sequencegenetics software species specificity structural structuralgenetics study support us vivaxgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:19 as **
  • Improved microbial gene identification with GLIMMER
    Nucleic Acids Res, Vol. 27, No. 23. (Dec 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to 0001 19991111 algorithms bacterial chains genes genetic govt markov models non-phs phs research support techniquesstandards us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as **
  • Microbial gene identification using interpolated Markov models
    Nucleic Acids Res, Vol. 26, No. 2. (Jan 1998), pp. 544-548.
    by SL Salzberg, AL Delcher, S Kasif, O White
    posted to 0001 19980228 algorithms alignment and bacterialanalysischemistry base chains dna frames govt haemophilus helicobacter influenzaegenetics markov non-phs open phs pylorigenetics reading research sensitivity sequence software specificity support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as **
  • EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance
    BMC Bioinformatics, Vol. 4, No. 1. (Jun 2003)
    by TS Larsen, A Krogh
    posted to non-us numerical 20031206 and bacillus bacterial bacterialgenetics binding biologymethodsstatistics chains coli coligenetics comparative computational data escherichia framesgenetics genes genetic genome govt helicobacter markov models mycobacterium predictive proteinschemistrygenetics pylorigenetics reading research ribosomeschemistrygenetics sensitivity sitesgenetics specificity statistical structural study subtilisgenetics support tests tuberculosisgenetics value 0500 of open by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:59 as **
  • Hidden Markov models for sequence analysis: extension and analysis of the basic method
    Comput Appl Biosci, Vol. 12, No. 2. (Apr 1996), pp. 95-107.
    by R Hughey, A Krogh
    posted to amino factual models 0001 algorithms chains studies alignmentmethodsstatistics evaluation govt homology non-us sequence acid analysismethodsstatistics data domainsgenetics humans markov numerical src statistical support us 19960401 animals base databases non-phs research software by kaspermunch to the group Bioinformatics on 2006-11-02 10:07:09 as **
  • Comparative ab initio prediction of gene structures using pair HMMs
    Bioinformatics, Vol. 18, No. 10. (Oct 2002), pp. 1309-1318.
    by IM Meyer, R Durbin
    posted to databases software specificity alignmentmethods chains mice sequence 0500 algorithms comparative exonsgenetics expression genetic models regulation analysis animals markov proteomicsmethods research study 20030506 acid and dnamethods gene govt humans non-us nucleic of reproducibility results sensitivity support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:59 as **
  • Gene finding with a hidden Markov model of genome structure and evolution
    Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 219-227.
    by JS Pedersen, J Hein
    posted to 0500 20030828 algorithms alignmentmethods analysis animals chains computer dnamethods evolution genetic genome govt homology humans markov mice models molecular non-us phylogeny processes research sequence simulation statistical stochastic support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:58 as **
  • A generalized hidden Markov model for the recognition of human genes in DNA
    Proc Int Conf Intell Syst Mol Biol, Vol. 4 (1996), pp. 134-142.
    by D Kulp, D Haussler, MG Reese, FH Eeckman
    posted to 0001 19960101 chains chromosomes deletion dnachemistry exons genetic govt humanchemistry humans introns markov models non-phs research sequence software support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:55 as **
  • Genie--gene finding in Drosophila melanogaster
    Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 529-538.
    by MG Reese, D Kulp, H Tammana, D Haussler
    posted to 0900 20000617 analysis animals biologymethods chains comparative computational databases dnamethods drosophila expressed factual genes genetic geneticsgenetics govt insectgenetics markov melanogastergenetics models non-phs phs promoter regions sequence software structural study support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:52 as **
  • Prediction of complete gene structures in human genomic DNA
    J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to 0001 19970425 analysis animals chains comparative data dna exons genes genetic genetics genome govt human introns markov models molecular non-phs phs probability promoter proteinsgenetics regions rna sequence software splicing study support us vertebratesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • GeneMark.hmm: new solutions for gene finding
    Nucleic Acids Res, Vol. 26, No. 4. (Feb 1998), pp. 1107-1115.
    by AV Lukashin, M Borodovsky
    posted to 0001 19980321 algorithms bacterial bacterialgenetics base chains coligenetics comparative databases dna escherichia evaluation factual genes genetic genome govt markov models phs sequence software studies study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • Heuristic approach to deriving models for gene finding
    Nucleic Acids Res, Vol. 27, No. 19. (Oct 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to 0001 19990911 1genetics bacterial cells chains codon eukaryotic evolution genes genetic genome govt hiv-1genetics human internet markov models molecular non-us phs support t-lymphotropic us viral virus by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:51 as **
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as **
  • AUGUSTUS: a web server for gene finding in eukaryotes
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (Jul 2004), pp. W309-W312.
    by M Stanke, R Steinkamp, S Waack, B Morgenstern
    posted to 0500 20040821 animals chains drosophila genes genome genomics human interface internet introns markov melanogastergenetics software user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as **
  • Two methods for improving performance of an HMM and their application for gene finding
    Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186.
    by A Krogh
    posted to 0001 19971010 algorithms base chains comparative data databases dnagenetics evaluation factual functions genes genetic govt human likelihood markov models molecular non-us sequence studies study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:40 as **
  • Hidden neural networks
    Neural Comput, Vol. 11, No. 2. (Feb 1999), pp. 541-563.
    by A Krogh, SK Riis
    posted to 0001 19990209 chains computer databases functions govt human likelihood markov models networks neural non-us pattern perception recognition speech statistical support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:38 as **
  • Using database matches with for HMMGene for automated gene detection in Drosophila
    Genome Res, Vol. 10, No. 4. (Apr 2000), pp. 523-528.
    by A Krogh
    posted to 0900 20000617 acid alcohol analysis and animals biologystatistics chains comparative computational computer-assisted data databases dehydrogenasegenetics drosophila factual genes govt homology insectgenetics markov melanogasterenzymologygenetics non-us nucleic numerical sensitivity sequence software specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:36 as **
  • A Gentle Tutorial on the EM Algorithm and its Application to Parameter Estimation for Gaussian Mixture and Hidden Markov Models
    (1997)
    by J Bilmes
    posted to estimation gaussian markov parameter by okarsligil to the group Bioinformatics on 2005-11-08 15:33:28 as *** along with 3 people and 2 groups garyfeng aufrank weimer ReadingLab ur-cls
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