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Group: Bioinformatics - with tag functions [21 articles]

Neue Artikel von Mitliedern der Gruppe Bioinformatics Gruppe with tag functions
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  • Evaluation of gene-finding programs on mammalian sequences
    Genome Res, Vol. 11, No. 5. (May 2001), pp. 817-832.
    by S Rogic, AK Mackworth, FB Ouellette
    posted to 1001 20010629 analysis animals base comparative composition cytosineanalysis dnamethods exonsgenetics functions genes genetic govt guanineanalysis human likelihood models non-us phylogeny sequence software species specificity structural study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:49 as **
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    Nucleic Acids Res, Vol. 29, No. 12. (Jun 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to 1001 20010728 algorithms alignment and archaeal archaealgenetics bacillus bacterial bacterialgenetics base biologymethods chains codon coligenetics computational computer databases escherichia evolution framesgenetics functions genes geneticgenetics genome initiatorgenetics internet likelihood markov molecular of open overlappinggenetics reading reproducibility results sensitivity sequence simulation software specificity subtilisgenetics transcription translation by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:46 as **
  • PyEvolve: a toolkit for statistical modelling of molecular evolution
    BMC Bioinformatics, Vol. 5, No. 1. (Jan 2004)
    by A Butterfield, V Vedagiri, E Lang, C Lawrence, MJ Wakefield, A Isaev, GA Huttley
    posted to 1000 20040621 animals benchmarkingstatistics comparative data design evolution functions genetic gorilla gorillagenetics govt human likelihood mice models molecular mutagenesisgenetics non-us numerical pan rats software softwarestatistics study support troglodytesgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:45 as **
  • Two methods for improving performance of an HMM and their application for gene finding
    Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186.
    by A Krogh
    posted to 0001 19971010 algorithms base chains comparative data databases dnagenetics evaluation factual functions genes genetic govt human likelihood markov models molecular non-us sequence studies study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:40 as **
  • Hidden neural networks
    Neural Comput, Vol. 11, No. 2. (Feb 1999), pp. 541-563.
    by A Krogh, SK Riis
    posted to 0001 19990209 chains computer databases functions govt human likelihood markov models networks neural non-us pattern perception recognition speech statistical support by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:38 as **
  • Pre-mRNA secondary structure prediction aids splice site prediction
    Pac Symp Biocomput (2002), pp. 223-234.
    by DJ Patterson, K Yasuhara, WL Ruzzo
    posted to 0400 20021003 acid analysis computer conformation exons functions genetic govt likelihood messengerchemistrygenetics models non-phs nucleic of precursorschemistry reproducibility results rna sequence simulation software splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:06:20 as **
  • Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions.
    Mol Phylogenet Evol, Vol. 25, No. 2. (Nov 2002), pp. 341-60.
    by Peter Goldblatt, Vincent Savolainen, Obie Porteous, Ivan Sostaric, Martyn Powell, Gail Reeves, John C Manning, Timothy G Barraclough, Mark W Chase
    posted to 414315 acid allocation analysis angiosperms animals bacterial banks basilicum bayes biodiversity biological birds calibration carboxylase chain classification codon comparative cooperation data databases demography diterpenes dna ecosystem energy environment european evolution factors financial flavonoids fossils functions fungal genes genetic genetics genome geography govt hybridization insects intergenic international interpretation introns iridaceae lamiaceae likelihood linear mitochondrial models molecular non-phs non-us nucleic ocimum of phylogeny plant plants plastids pollen polymerase proteins random rays reaction regression reproducibility research results ribosomal ribulose-bisphosphate sequence solar spacer specimen states statistical study support temperature theorem time tobacco transpiration ultraviolet union united us variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as ** along with 2 groups biodiversity_conservation GrassBase
  • Resolution of a supertree/supermatrix paradox.
    Syst Biol, Vol. 51, No. 4. (Aug 2002), pp. 652-64.
    by John Gatesy, Conrad Matthee, Rob Desalle, Cheryl Hayashi
    posted to 14530139 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as ** along with 2 groups biodiversity_conservation GrassBase
  • Hidden likelihood support in genomic data: can forty-five wrongs make a right?
    Syst Biol, Vol. 54, No. 3. (Jun 2005), pp. 483-92.
    by John Gatesy, Richard H Baker
    posted to 16012113 animals artiodactyla biology classification comparative computational data dolphins evolution extramural female functions fungal genetic genome govt interpretation likelihood male models nih non-phs non-us phs phylogeny research saccharomyces species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:36 as ** along with 2 groups biodiversity_conservation GrassBase
  • The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility.
    Mol Phylogenet Evol, Vol. 17, No. 3. (Dec 2000), pp. 388-400.
    by RC Evans, LA Alice, CS Campbell, EA Kellogg, TA Dickinson
    posted to 11133193 alignment analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny synthase theorem trait us variance variation bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:34 as ** along with 2 groups biodiversity_conservation GrassBase
  • Supertree construction in the genomic age.
    Methods Enzymol, Vol. 395 (2005), pp. 745-57.
    by Olaf
    posted to 15865993 animals artiodactyla biology carnivora classification comparative computational computer data databases design dolphins evolution extramural female functions fungal genetic genome genomics govt interpretation likelihood male models nih non-phs non-us phs phylogeny research ruminants saccharomyces simulation species specificity statistical study support us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:28 as ** along with 2 groups biodiversity_conservation GrassBase
  • Assessment of the accuracy of matrix representation with parsimony analysis supertree construction.
    Syst Biol, Vol. 50, No. 4. (Aug 2001), pp. 565-79.
    by Bininda OR Emonds, MJ Sanderson
    posted to 12116654 algorithms alignment alligators analysis and angiosperms animals array artiodactyla b base bayes behavior biodiversity biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:27 as ** along with 2 groups biodiversity_conservation GrassBase
  • Genetic control of branching in foxtail millet.
    Proc. Natl. Acad. Sci. U. S. A., Vol. 101, No. 24. (Jun 2004), pp. 9045-50.
    by Andrew N Doust, Katrien M Devos, Michael D Gadberry, Mike D Gale, Elizabeth A Kellogg
    posted to 15184666 analysis base bayes chain chromosome comparative composition conserved data dna evolution expression flowers functions gene genes genetic genome govt leaves likelihood loci mapping models molecular mutation non-phs non-us of phenotype phylogeny physiology plant poaceae polymerase polymorphism primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae sequence setaria spacer study support theorem trait us variance bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:26 as ** along with 2 groups biodiversity_conservation GrassBase
  • A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.
    Genome Res., Vol. 12, No. 7. (Jul 2002), pp. 1080-90.
    by Vincent Daubin, Manolo Gouy, Guy Perrière
    posted to 12097345 acid algorithms alignment alligators analysis and angiosperms animals array artiodactyla b bacterial base bayes behavior biodiversity biology biometry birds birth body calibration caloric carnivora chiroptera classification cluster comparative computational computer consensus constitution crocodiles cytochrome data decision design dna ecology evolution factors feathers feeding fossils functions genes genetic genetics genome govt graphics group hibernation homology interface interpretation likelihood longevity meta-analysis mitochondrial models molecular multivariate mutational nesting non-phs non-us nucleic oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics structural study support theorem theoretical time trees us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:23 as ** along with 2 groups biodiversity_conservation GrassBase
  • Clann: investigating phylogenetic information through supertree analyses.
    Bioinformatics, Vol. 21, No. 3. (Feb 2005), pp. 390-2.
    by CJ Creevey, JO Mcinerney
    posted to 15374874 acid algorithms analysis animal animals artiodactyla bacteria bacterial biological biology carnivora classification climate cluster comparative computational computer computing data databases decision design dna dolphins drosophila environment evolution extramural female functions fungal fungi gene genetic genome genomics geography govt groups horizontal hybridization interpretation introns likelihood male mathematical models molecular nih non-phs non-us nucleic of pedigree phs phylogeny pinus plant plants population proteins regression reproduction research ribosomal roots ruminants saccharomyces seeds simulation software species specificity statistical study support transfer trees us variance whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:22 as ** along with 2 groups biodiversity_conservation GrassBase
  • Does a tree-like phylogeny only exist at the tips in the prokaryotes?
    Proc Biol Sci, Vol. 271, No. 1557. (Dec 2004), pp. 2551-8.
    by Christopher J Creevey, David A Fitzpatrick, Gayle K Philip, Rhoda J Kinsella, Mary J O'Connell, Melissa M Pentony, Simon A Travers, Mark Wilkinson, James O Mcinerney
    posted to 15615680 animal animals artiodactyla bacteria bacterial biology carnivora classification comparative computational computer data databases design dolphins drosophila evolution extramural female functions fungal fungi gene genetic genome genomics govt groups horizontal interpretation introns likelihood male models molecular nih non-phs non-us phs phylogeny plant plants population proteins research ribosomal ruminants saccharomyces simulation species specificity statistical study support transfer us whales bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:21 as ** along with 2 groups biodiversity_conservation GrassBase
  • Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins.
    Mol. Biol. Evol., Vol. 16, No. 4. (Apr 1999), pp. 553-63.
    by G Bharathan, BJ Janssen, EA Kellogg, N Sinha
    posted to trait us variance variation bibtex-import synthase 10331280 acid alignment amino analysis angiosperms animals arabidopsis base bayes behavior biology blotting cerevisiae chain chromosome classification cloning comparative composition computational conserved crosses cytoplasmic data developmental dna dna-binding dosage duplicate duplication evolution expression feeding flowers functions fungal gene genes genetic genetics genome genotype govt granules homeobox homeodomain homology leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers proteins pseudogenes quantitative reaction regulation research ribosomal roots rubiaceae saccharomyces sequence setaria shoots southern spacer species specificity starch study support synteny theorem by kehan to the group Bioinformatics on 2006-07-13 16:23:11 as ** along with 2 groups biodiversity_conservation GrassBase
  • A phylogeny of the tinamous (aves: palaeognathiformes) based on integumentary characters.
    Syst Biol, Vol. 51, No. 6. (Dec 2002), pp. 959-79.
    by Sara Bertelli, Norberto P Giannini, Pablo A Goloboff
    posted to 12554461 algorithms alignment alligators analysis and angiosperms animals array b base bayes behavior biodiversity birds birth body calibration caloric carnivora chiroptera classification cluster comparative computer constitution crocodiles cytochrome data design dna ecology evolution factors feathers feeding fossils functions genetic genetics govt graphics group hibernation interface interpretation likelihood longevity meta-analysis mitochondrial models molecular mutational nesting non-phs non-us oligonucleotide paleontology pedigree phylogeny population rate re reproduction research restriction search sequence simulation snakes software species specificity statistical statistics study support theorem theoretical time us user-computer variation vertebrates bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as ** along with 2 groups biodiversity_conservation GrassBase
  • Do Plants Have a One-Way Ticket to Genomic Obesity?
    Plant Cell, Vol. 9, No. 9. (Sep 1997), pp. 1509-1514.
    by JL Bennetzen, EA Kellogg
    posted to 12237393 analysis arabidopsis base bayes cerevisiae chain chromosome comparative composition conserved crosses data developmental dna duplicate duplication evolution expression flowers functions fungal gene genes genetic genome genotype govt leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase polymorphism polyploidy primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae saccharomyces sequence setaria spacer species specificity study support synteny theorem trait us variance bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:23:08 as ** along with 2 groups biodiversity_conservation GrassBase
  • Reply.
    Plant Cell, Vol. 9, No. 11. (Nov 1997), pp. 1901-1902.
    by JL Bennetzen, EA Kellogg
    posted to genetic genome genotype govt leaves likelihood loci mapping models molecular mutagenesis mutation non-phs non-us of phenotype phylogeny physiology plant plants poaceae polymerase 12237351 analysis arabidopsis base bayes cerevisiae chain chromosome comparative composition conserved crosses data developmental dna polymorphism polyploidy primers pseudogenes quantitative reaction regulation research ribosomal rubiaceae saccharomyces sequence setaria spacer species specificity study support synteny theorem trait us variance bibtex-import duplicate duplication evolution expression flowers functions fungal gene genes by kehan to the group Bioinformatics on 2006-07-13 16:23:01 as ** along with 2 groups biodiversity_conservation GrassBase
  • Phylogeny, biogeography, and the evolution of life-history traits in Leucadendron (Proteaceae).
    Mol Phylogenet Evol, Vol. 33, No. 3. (Dec 2004), pp. 845-60.
    by Nigel P Barker, Alain Vanderpoorten, Cynthia M Morton, John P Rourke
    posted to 15522808 acyclovir agents analysis antiviral debridement dna evolution factors functions geography govt herpetic humans interferons keratitis likelihood molecular non-us phylogeny pollen prednisolone proteaceae recurrence research ribosomal sequence spacer support time bibtex-import by kehan to the group Bioinformatics on 2006-07-13 16:22:59 as ** along with 2 groups biodiversity_conservation GrassBase
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