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Group: Bioinformatics - with tag exons [29 articles]

Neue Artikel von Mitliedern der Gruppe Bioinformatics Gruppe with tag exons
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  • Identification of SATB2 as the cleft palate gene on 2q32-q33.
    Hum Mol Genet, Vol. 12, No. 19. (2003), pp. 2491-501.
  • Gene identification in novel eukaryotic genomes by self-training algorithm
    Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506.
  • A non-EST-based method for exon-skipping prediction
    Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
  • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    Science, Vol. 302, No. 5653. (Dec 2003), pp. 2141-2144.
    by JM Johnson, J Castle, Garrett P Engele, Z Kan, PM Loerch, CD Armour, R Santos, EE Schadt, R Stoughton, DD Shoemaker
  • Computational analysis of full-length mouse cDNAs compared with human genome sequences
    Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677.
  • C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
    Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41.
    by J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, L Jacotot, N Bertin, R Janky, T Moore, Hudson, JL Hartley, MA Brasch, J Vandenhaute, S Boulton, GA Endress, S Jenna, E Chevet, V Papasotiropoulos, PP Tolias, J Ptacek, M Snyder, R Huang, MR Chance, H Lee, Doucette L Stamm, DE Hill, M Vidal
  • How prevalent is functional alternative splicing in the human genome?
    Trends Genet, Vol. 20, No. 2. (Feb 2004), pp. 68-71.
    by R Sorek, R Shamir, G Ast
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
  • Global identification of human transcribed sequences with genome tiling arrays
    Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246.
    by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder
  • Experimental annotation of the human genome using microarray technology
    Nature, Vol. 409, No. 6822. (Feb 2001), pp. 922-927.
    by DD Shoemaker, EE Schadt, CD Armour, YD He, Garrett P Engele, PD Mcdonagh, PM Loerch, A Leonardson, PY Lum, G Cavet, LF Wu, SJ Altschuler, S Edwards, J King, JS Tsang, G Schimmack, JM Schelter, J Koch, M Ziman, MJ Marton, B Li, P Cundiff, T Ward, J Castle, M Krolewski, MR Meyer, M Mao, J Burchard, MJ Kidd, H Dai, JW Phillips, PS Linsley, R Stoughton, S Scherer, MS Boguski
  • EST comparison indicates 38\% of human mRNAs contain possible alternative splice forms
    FEBS Lett, Vol. 474, No. 1. (May 2000), pp. 83-86.
    by D Brett, J Hanke, G Lehmann, S Haase, S Delbruck, S Krueger, J Reich, P Bork
  • Identification of protein coding regions in genomic DNA
    J Mol Biol, Vol. 248, No. 1. (Apr 1995), pp. 1-18.
    by EE Snyder, GD Stormo
  • Finding genes in DNA with a Hidden Markov Model
    J Comput Biol, Vol. 4, No. 2. (Sum 1997), pp. 127-141.
  • Identification and analysis of alternative splicing events conserved in human and mouse
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855.
    by GW Yeo, E Van Nostrand, D Holste, T Poggio, CB Burge
  • Predictive identification of exonic splicing enhancers in human genes
    Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013.
    by WG Fairbrother, RF Yeh, PA Sharp, CB Burge
  • GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders
    Nucleic Acids Res, Vol. 31, No. 13. (Jul 2003), pp. 3601-3604.
  • Recent advances in gene structure prediction
    Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272.
    by MR Brent, R Guigo
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (Jan 1997), pp. 565-568.
    by MQ Zhang
  • A gene expression map for the euchromatic genome of Drosophila melanogaster
    Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660.
  • A generalized hidden Markov model for the recognition of human genes in DNA
    Proc Int Conf Intell Syst Mol Biol, Vol. 4 (1996), pp. 134-142.
    by D Kulp, D Haussler, MG Reese, FH Eeckman
  • Exon recognition in vertebrate splicing
    J Biol Chem, Vol. 270, No. 6. (Feb 1995), pp. 2411-2414.
    by SM Berget
  • Computational identification of promoters and first exons in the human genome
    Nat Genet, Vol. 29, No. 4. (Dec 2001), pp. 412-417.
    by RV Davuluri, I Grosse, MQ Zhang
  • Prediction of complete gene structures in human genomic DNA
    J Mol Biol, Vol. 268, No. 1. (Apr 1997), pp. 78-94.
    by C Burge, S Karlin
  • Influence of intron length on alternative splicing of CD44
    Mol Cell Biol, Vol. 18, No. 10. (Oct 1998), pp. 5930-5941.
    by MV Bell, AE Cowper, MP Lefranc, JI Bell, GR Screaton
  • Ultraconserved elements in the human genome
    Science, Vol. 304, No. 5675. (May 2004), pp. 1321-1325.
  • Analysis and recognition of 5' UTR intron splice sites in human pre-mRNA
    Nucleic Acids Res, Vol. 32, No. 3. (2004), pp. 1131-1142.
    by E Eden, S Brunak
  • Large-scale transcriptional activity in chromosomes 21 and 22
    Science, Vol. 296, No. 5569. (May 2002), pp. 916-919.
  • Pre-mRNA secondary structure prediction aids splice site prediction
    Pac Symp Biocomput (2002), pp. 223-234.
    by DJ Patterson, K Yasuhara, WL Ruzzo
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