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Group: Bioinformatics - with tag computational [63 articles]

Neue Artikel von Mitliedern der Gruppe Bioinformatics Gruppe with tag computational
  • A Computational Approach to the Functional Screening of Genomes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e174.
    by Davide Chiarugi, Pierpaolo Degano, Roberto Marangoni
    posted to 2007 bioinformatics comparative_genomics computational genomics by hpaces to the group Bioinformatics on 2007-11-03 18:41:55 as *** along with 3 people cjeans zwang ale
  • Computational identification and analysis of G protein-coupled receptor targets
    posted to identificatio computational by sangeetha to the group Bioinformatics on 2007-06-14 10:42:11 as ** along with 1 group insilicodrug
  • [Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?]
    Tanpakushitsu Kakusan Koso, Vol. 49, No. 16. (2004), pp. 2521-8.
    by A Kanai
    posted to genome-chromatin untranslatedclassificationgeneticsphysiology transcription sequence rna reading open messenger imprintinggenetics humans genomic geneticgenetics genetic frames dosage dna disassemblygenetics computational complementary compensation chromatin biology assembly antisense animals and analysis by sameetmehta to the group Bioinformatics on 2007-01-31 02:57:36 as **** along with 1 group ProkaryoteInterestGroup
  • A non-EST-based method for exon-skipping prediction
    Genome Res, Vol. 14, No. 8. (Aug 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
    posted to 0500 20040924 acid alternative animals biologymethods comparative computational databases exons expressed genetic genome human humans introns messengergenetics mice models nucleic rna sequence splicing study tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as **
  • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    Science, Vol. 301, No. 5631. (Jul 2003), pp. 376-379.
    by S Kikuchi, K Satoh, T Nagata, N Kawagashira, K Doi, N Kishimoto, J Yazaki, M Ishikawa, H Yamada, H Ooka, I Hotta, K Kojima, T Namiki, E Ohneda, W Yahagi, K Suzuki, CJ Li, K Ohtsuki, T Shishiki, Y Otomo, K Murakami, Y Iida, S Sugano, T Fujimura, Y Suzuki, Y Tsunoda, T Kurosaki, T Kodama, H Masuda, M Kobayashi, Q Xie, M Lu, R Narikawa, A Sugiyama, K Mizuno, S Yokomizo, J Niikura, R Ikeda, J Ishibiki, M Kawamata, A Yoshimura, J Miura, T Kusumegi, M Oka, R Ryu, M Ueda, K Matsubara, J Kawai, P Carninci, J Adachi, K Aizawa, T Arakawa, S Fukuda, A Hara, W Hashizume, N Hayatsu, K Imotani, Y Ishii, M Itoh, I Kagawa, S Kondo, H Konno, A Miyazaki, N Osato, Y Ota, R Saito, D Sasaki, K Sato, K Shibata, A Shinagawa, T Shiraki, M Yoshino, Y Hayashizaki, A Yasunishi
    posted to 0500 20030802 acid alternative amino analysis antisensegenetics biology cloning complementary computational data databases dna factorschemistrygenetics frames genes genetic genome govt homology molecular non-us nucleic open oryza plant protein proteinschemistrygeneticsphysiology reading research rna sativagenetics sequence splicing structure support tertiary transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:00 as **
  • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    Genome Res, Vol. 13, No. 6B. (Jun 2003), pp. 1290-1300.
    by M Zavolan, S Kondo, C Schonbach, J Adachi, DA Hume, Y Hayashizaki, T Gaasterland
    posted to 0500 20030812 alternative analysis animals biologymethodsstatistics cluster comparative computational data databases exonsgenetics genes geneticgenetics geneticsgeneticsphysiology geneticstatistics genome govt initiation messengergeneticsphysiology mice non-phs non-us numerical phs polypyrimidine proteingenetics proteomegenetics research rna sitephysiology sitesgenetics splice splicinggenetics splicinggeneticsphysiology structuralgeneticsphysiology study support tract-binding transcription us variation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Computational analysis of full-length mouse cDNAs compared with human genome sequences
    Mamm Genome, Vol. 12, No. 9. (Sep 2001), pp. 673-677.
    by S Kondo, A Shinagawa, T Saito, H Kiyosawa, I Yamanaka, K Aizawa, S Fukuda, A Hara, M Itoh, J Kawai, K Shibata, Y Hayashizaki
    posted to 1001 20020105 acid algorithms analysis animals biologymethods comparative complementarygenetics computational data databases dna dnamethods exons factual genome govt homology human humans introns mice molecular non-us nucleic research sequence study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as **
  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones
    PLoS Biol, Vol. 2, No. 6. (Jun 2004)
    by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Yamaguchi Y Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, Thierry J Mieg, Thierry D Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Bonaldo F Mde, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, Fukami K Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, Mariage R Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, Piatier D Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano
    posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as **
  • Genome-wide assembly and analysis of alternative transcripts in mouse
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754.
    by AA Sharov, DB Dudekula, MS Ko
    posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as **
  • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    Nucleic Acids Res, Vol. 30, No. 17. (Sep 2002), pp. 3754-3766.
    by Q Xu, B Modrek, C Lee
    posted to 0400 20021126 acid alternative amino biologystatistics brainmetabolism cdc42 computational data dna-binding expressed expression factorsgenetics female gene geneticgenetics genome govt gtp-binding homology human humans isoformsgenetics library male molecular non-phs numerical profiling protein proteingenetics proteinsgenetics research sequence splicinggenetics support tags transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:54 as **
  • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
    Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341.
    by L Croft, S Schandorff, F Clark, K Burrage, P Arctander, JS Mattick
    posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900.
    by Z Kan, EC Rouchka, WR Gish, DJ States
    posted to 1001 20010629 alignmentinstrumentationmethods alternative biologyinstrumentationmethods comparative computational expressed genes genetic genome govt human humans messengermetabolism non-phs phs research rna sequence software splicinggenetics structuralgenetics study support tags transcription us validation by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as **
  • Complete sequencing and characterization of 21,243 full-length human cDNAs
    Nat Genet, Vol. 36, No. 1. (Jan 2004), pp. 40-45.
    by T Ota, Y Suzuki, T Nishikawa, T Otsuki, T Sugiyama, R Irie, A Wakamatsu, K Hayashi, H Sato, K Nagai, K Kimura, H Makita, M Sekine, M Obayashi, T Nishi, T Shibahara, T Tanaka, S Ishii, J Yamamoto, K Saito, Y Kawai, Y Isono, Y Nakamura, K Nagahari, K Murakami, T Yasuda, T Iwayanagi, M Wagatsuma, A Shiratori, H Sudo, T Hosoiri, Y Kaku, H Kodaira, H Kondo, M Sugawara, M Takahashi, K Kanda, T Yokoi, T Furuya, E Kikkawa, Y Omura, K Abe, K Kamihara, N Katsuta, K Sato, M Tanikawa, M Yamazaki, K Ninomiya, T Ishibashi, H Yamashita, K Murakawa, K Fujimori, H Tanai, M Kimata, M Watanabe, S Hiraoka, Y Chiba, S Ishida, Y Ono, S Takiguchi, S Watanabe, M Yosida, T Hotuta, J Kusano, K Kanehori, Takahashi A Fujii, H Hara, TO Tanase, Y Nomura, S Togiya, F Komai, R Hara, K Takeuchi, M Arita, N Imose, K Musashino, H Yuuki, A Oshima, N Sasaki, S Aotsuka, Y Yoshikawa, H Matsunawa, T Ichihara, N Shiohata, S Sano, S Moriya, H Momiyama, N Satoh, S Takami, Y Terashima, O Suzuki, S Nakagawa, A Senoh, H Mizoguchi, Y Goto, F Shimizu, H Wakebe, H Hishigaki, T Watanabe, A Sugiyama, M Takemoto, B Kawakami, M Yamazaki, K Watanabe, A Kumagai, S Itakura, Y Fukuzumi, Y Fujimori, M Komiyama, H Tashiro, A Tanigami, T Fujiwara, T Ono, K Yamada, Y Fujii, K Ozaki, M Hirao, Y Ohmori, A Kawabata, T Hikiji, N Kobatake, H Inagaki, Y Ikema, S Okamoto, R Okitani, T Kawakami, S Noguchi, T Itoh, K Shigeta, T Senba, K Matsumura, Y Nakajima, T Mizuno, M Morinaga, M Sasaki, T Togashi, M Oyama, H Hata, M Watanabe, T Komatsu, Mizushima J Sugano, T Satoh, Y Shirai, Y Takahashi, K Nakagawa, K Okumura, T Nagase, N Nomura, H Kikuchi, Y Masuho, R Yamashita, K Nakai, T Yada, Y Nakamura, O Ohara, T Isogai, S Sugano
    posted to 0500 20 20040203 21-22 analysis and biology chromosomes comparative complementary computational dna frames govt human humans messenger non-us open pair reading research rna sequence study support y by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as **
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
    Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as **
  • Empirical analysis of transcriptional activity in the Arabidopsis genome
    Science, Vol. 302, No. 5646. (Oct 2003), pp. 842-846.
    by K Yamada, J Lim, JM Dale, H Chen, P Shinn, CJ Palm, AM Southwick, HC Wu, C Kim, M Nguyen, P Pham, R Cheuk, Karlin G Newmann, SX Liu, B Lam, H Sakano, T Wu, G Yu, M Miranda, HL Quach, M Tripp, CH Chang, JM Lee, M Toriumi, MM Chan, CC Tang, CS Onodera, JM Deng, K Akiyama, Y Ansari, T Arakawa, J Banh, F Banno, L Bowser, S Brooks, P Carninci, Q Chao, N Choy, A Enju, AD Goldsmith, M Gurjal, NF Hansen, Y Hayashizaki, Johnson C Hopson, VW Hsuan, K Iida, M Karnes, S Khan, E Koesema, J Ishida, PX Jiang, T Jones, J Kawai, A Kamiya, C Meyers, M Nakajima, M Narusaka, M Seki, T Sakurai, M Satou, R Tamse, M Vaysberg, EK Wallender, C Wong, Y Yamamura, S Yuan, K Shinozaki, RW Davis, A Theologis, JR Ecker
    posted to 0500 20031210 acid analysis arabidopsisgenetics array biology chain chromosome chromosomes cloning complementarygenetics computational dna expressed expression frames gene genes genetic genome genomics govt hybridization intergenic mapping messengergenetics molecular non-phs non-us nucleic oligonucleotide open plant plantgenetics polymerase profiling reaction reading research reverse rna sequence support tags transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:49 as **
  • Global identification of human transcribed sequences with genome tiling arrays
    Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246.
    by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder
    posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as **
  • Experimental annotation of the human genome using microarray technology
    Nature, Vol. 409, No. 6822. (Feb 2001), pp. 922-927.
    by DD Shoemaker, EE Schadt, CD Armour, YD He, Garrett P Engele, PD Mcdonagh, PM Loerch, A Leonardson, PY Lum, G Cavet, LF Wu, SJ Altschuler, S Edwards, J King, JS Tsang, G Schimmack, JM Schelter, J Koch, M Ziman, MJ Marton, B Li, P Cundiff, T Ward, J Castle, M Krolewski, MR Meyer, M Mao, J Burchard, MJ Kidd, H Dai, JW Phillips, PS Linsley, R Stoughton, S Scherer, MS Boguski
    posted to 1001 20010327 22 algorithms alternative analysis array biology cell chromosomes complementary computational dna exons genome human humans line oligonucleotide pair probes project sequence splicing by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as **
  • A comprehensive transcript index of the human genome generated using microarrays and computational approaches
    Genome Biol, Vol. 5, No. 10. (2004)
    by EE Schadt, SW Edwards, D Guhathakurta, D Holder, L Ying, V Svetnik, A Leonardson, KW Hart, A Russell, G Li, G Cavet, J Castle, P Mcdonagh, Z Kan, R Chen, A Kasarskis, M Margarint, RM Caceres, JM Johnson, CD Armour, Garrett PW Engele, NF Tsinoremas, DD Shoemaker
    posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as **
  • Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication
    Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100.
    by EV Linardopoulou, EM Williams, Y Fan, C Friedman, JM Young, BJ Trask
    posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as **
  • The microRNA Registry
    Nucleic Acids Res, Vol. 32, No. Database issue. (Jan 2004), pp. D109-D111.
    by Griffiths S Jones
    posted to 0500 20040121 acid animals base biology computational conformation databases humans internet micrornaschemistrygenetics nucleic registries sequence by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as **
  • Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping
    Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475.
    by TE Royce, JS Rozowsky, P Bertone, M Samanta, V Stolc, S Weissman, M Snyder, M Gerstein
    posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as **
  • Predictive identification of exonic splicing enhancers in human genes
    Science, Vol. 297, No. 5583. (Aug 2002), pp. 1007-1013.
    by WG Fairbrother, RF Yeh, PA Sharp, CB Burge
    posted to 1001 20020829 acid analysis biology complementary computational consensus databases dna exons genes genome govt human humans hypoxanthine introns mutation non-us nucleic oligonucleotidesgenetics phosphoribosyltransferasegenetics phs point regulatory research rna sequence sequences splicing support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:23 as **
  • SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model
    Genome Res, Vol. 13, No. 3. (Mar 2003), pp. 496-502.
    by M Alexandersson, S Cawley, L Pachter
    posted to 0500 20030412 alignmentmethodsstatistics animals biologymethodsstatistics chains comparative computational conserved data design dna dnagenetics falciparumgenetics genes govt humans markov mice numerical phs plasmodium protozoangenetics research sequence sequencegenetics software species specificity structural structuralgenetics study support us vivaxgenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:19 as **
  • Comparative gene prediction in human and mouse
    Genome Res, Vol. 13, No. 1. (Jan 2003), pp. 108-117.
    by G Parra, P Agarwal, JF Abril, T Wiehe, JW Fickett, R Guigo
    posted to 0400 20030318 22genetics acid animals biologymethods chromosomes comparative computational databases forecastingmethods genes genetic genome govt human humans mice non-us nucleic of pair predictive reproducibility research results software structuralgenetics study support tests value by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as **
  • GAZE: a generic framework for the integration of gene-prediction data by dynamic programming
    Genome Res, Vol. 12, No. 9. (Sep 2002), pp. 1418-1427.
    by KL Howe, T Chothia, R Durbin
    posted to 0400 20021031 acid algorithms alignment and animals biologymethodsstatistics caenorhabditis comparative computational data databases elegansgenetics factual forecastingmethods genes genetic genome govt helminthgenetics homology information internet models non-us nucleic numerical probability research retrievalstatistics rna sequence sites software storage structural study support tagged trans-splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:15 as **
  • Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
    Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582.
    by C Wei, P Lamesch, M Arumugam, J Rosenberg, P Hu, M Vidal, MR Brent
    posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as **
  • Integrating genomic homology into gene structure prediction
    Bioinformatics, Vol. 17 Suppl 1 (2001), pp. S140-S148.
    by I Korf, P Flicek, D Duan, MR Brent
    posted to 1001 20020228 acid algorithms alignmentstatistics and animals base biology comparative computational conserved data dnagenetics evolution genome govt homology human humans mice models molecular non-phs non-us nucleic numerical phs research sensitivity sequence specificity statistical study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:11 as **
  • Begin at the beginning: predicting genes with 5' UTRs
    Genome Res, Vol. 15, No. 5. (May 2005), pp. 742-747.
    by RH Brown, SS Gross, MR Brent
    posted to dna evaluation exonsgenetics extramural genesgenetics genetic genome genomicsmethods govt human humans initiation models molecular