Group: Bioinformatics - with tag 0900 [43 articles]

Nucleic Acids Res, Vol. 33, No. 20. (2005), pp. 6494-6506.

by A Lomsadze, Ter V Hovhannisyan, YO Chernoff, M Borodovsky

posted to 0900 20051220 algorithms animals chains comparative exons extramural genes genome genomicsmethods markov nih of phylogeny reproducibility research results study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as

Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 897-901.

by G Dror, R Sorek, R Shamir

posted to 0900 20050713 algorithms alignmentmethods alternative analysis animals artificial automatedmethods chromosome comparative conserved dnamethods evolution exonsgenetics govt humans intelligence mappingmethods mice molecular non-us pattern recognition research sequence sequencegenetics software splicinggenetics study support by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as

Bioinformatics, Vol. 21 Suppl 1 (Jun 2005), pp. i369-i377.

by G Rätsch, S Sonnenburg, B Schölkopf

posted to 0900 20050618 by kaspermunch to the group Bioinformatics on 2006-11-02 10:09:02 as

Nucleic Acids Res, Vol. 32, No. 17. (2004), pp. 5096-5103.

by K Iida, M Seki, T Sakurai, M Satou, K Akiyama, T Toyoda, A Konagaya, K Shinozaki

posted to 0900 20041013 alternative arabidopsisgeneticsgrowth base chromosome cold complementarychemistry developmentmetabolism dna genome govt mapping messengermetabolism non-us plant plantmetabolism precursorsmetabolism research rna sequence splicing support by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:59 as

PLoS Biol, Vol. 2, No. 6. (Jun 2004)

by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Yamaguchi Y Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, Thierry J Mieg, Thierry D Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Bonaldo F Mde, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, Fukami K Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, Mariage R Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, Piatier D Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano

posted to 0900 20050208 alternative biologymethods complementarygenetics computational databases dna framesgenetics genesgeneticsphysiology genetic genome govt human humans internet microsatellite non-phs non-us nucleotide open phs polymorphism protein reading repeatsgenetics research single splicinggenetics structure support tertiary us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:58 as

Genome Res, Vol. 15, No. 5. (May 2005), pp. 748-754.

by AA Sharov, DB Dudekula, MS Ko

posted to 0900 20050610 algorithms alternative analysis animals base biologymethods comparative computational data databases dna genesgenetics genetic genome micegenetics molecular sequence splicinggenetics study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:57 as

Nat Genet, Vol. 24, No. 4. (Apr 2000), pp. 340-341.

by L Croft, S Schandorff, F Clark, K Burrage, P Arctander, JS Mattick

posted to 0900 20000508 alternative biology computational databases exonsgenetics expressed factualtrends frequency gene genome human humans intronsgenetics isoformsgenetics messengergenetics protein rna sequence splicinggenetics tags by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as

Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 73-77.

by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe

posted to 0900 20050409 alternative animals exons expressed genetic genome govt humans mice models non-us protein research sequence software species specificity splicing structure support tags tertiary by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:53 as

Hist Philos Life Sci, Vol. 26, No. 1. (2004)

by SM Downes

posted to 0900 20050511 alternative animals biology concept evolution formation genes genome human humans molecular philosophy splicinggenetics by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as

J Comput Biol, Vol. 12, No. 6. (Jul 2005), pp. 882-893.

by Z Wu, RA Irizarry

posted to 0900 20051019 acid algorithms analysismethods and array comparative data expression gene genetic hybridization interpretation messengergenetics models nucleic of oligonucleotide processes profilingmethods reproducibility results rna sensitivity sequence specificity statistical stochastic study by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:52 as

Trends Genet, Vol. 21, No. 2. (Feb 2005), pp. 93-102.

by JM Johnson, S Edwards, D Shoemaker, EE Schadt

posted to 0900 20050409 22 analysismethods animals antisensechemistry array biology chromosomes complementarymetabolism computational dna exons genetic genome human humans introns isoforms messengerchemistrymetabolism models oligonucleotide oligonucleotides pair protein rna sequence software statistics transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:50 as

Science, Vol. 306, No. 5705. (Dec 2004), pp. 2242-2246.

by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder

posted to 0900 20050120 acid analysismethods animals array base biology chain complementary computational conserved cpg databases dna exons genetic genome govt homology human humans hybridization intergenic introns islands messengergenetics mice nucleic of oligonucleotide phs polymerase probes proteinschemistrygenetics reaction reproducibility research results reverse rna sequence support transcriptase transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:47 as

Genome Biol, Vol. 5, No. 10. (2004)

by EE Schadt, SW Edwards, D Guhathakurta, D Holder, L Ying, V Svetnik, A Leonardson, KW Hart, A Russell, G Li, G Cavet, J Castle, P Mcdonagh, Z Kan, R Chen, A Kasarskis, M Margarint, RM Caceres, JM Johnson, CD Armour, Garrett PW Engele, NF Tsinoremas, DD Shoemaker

posted to 0900 20050729 20genetics 22genetics analysis and array biology chromosomes computational conserved expression gene geneticgenetics genome human humans of oligonucleotide organ pair profiling reproducibility results sensitivity sequence sequencegenetics specificity transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:46 as

Science, Vol. 309, No. 5740. (Sep 2005), pp. 1564-1566.

by S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, CC Yap, M Suzuki, J Kawai, H Suzuki, P Carninci, Y Hayashizaki, C Wells, M Frith, T Ravasi, KC Pang, J Hallinan, J Mattick, DA Hume, L Lipovich, S Batalov, PG Engstrom, Y Mizuno, MA Faghihi, A Sandelin, AM Chalk, Mottagui S Tabar, Z Liang, B Lenhard, C Wahlestedt

posted to 0900 20050915 animals antisensebiosynthesis expression gene genetic genome govt humans interference messengerbiosynthesis micegenetics non-us regulation research rna support transcription by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:45 as

Science, Vol. 309, No. 5740. (Sep 2005), pp. 1559-1563.

by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, Ambesi A Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, Georgii P Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S Mcwilliam, Madan M Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, Mottagui S Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schonbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, Kanamori M Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Okamura Y Oho, H Suzuki, J Kawai, Y Hayashizaki

posted to 0900 20050915 3 acid animals base complementarychemistry conserved dna genetic genetics genome genomics govt human humans initiation micegenetics non-us promoter proteinsgenetics regions regulatory research ribonucleic rna rnachemistryclassification sequence sequences site splicing support terminator transcription untranslated untranslatedchemistry by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:43 as

Nature, Vol. 437, No. 7055. (Sep 2005), pp. 94-100.

by EV Linardopoulou, EM Williams, Y Fan, C Friedman, JM Young, BJ Trask

posted to 0900 20050913 acid animals base biology breakagegenetics chromosome chromosomes computational dna duplication extramural factors gene genetic geneticgenetics genome genomics govt homology human humangenetics humans models nih nucleic phs polymorphism primatesgenetics recombination repair research sequence support telomeregenetics time translocation us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:41 as

Genomics, Vol. 85, No. 1. (Jan 2005), pp. 1-15.

by TC Mockler, S Chan, A Sundaresan, H Chen, SE Jacobsen, JR Ecker

posted to 0900 20050623 analysismethodstrends animals array chromatin dna expression extramural gene geneticgenetics genome genotype govt humans immunoprecipitationmethodstrends methylation nih non-phs oligonucleotide phs polymorphism profilingmethodstrends research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:40 as

Trends Genet, Vol. 21, No. 8. (Aug 2005), pp. 466-475.

by TE Royce, JS Rozowsky, P Bertone, M Samanta, V Stolc, S Weissman, M Snyder, M Gerstein

posted to 0900 20050915 algorithms analysismethodsstatistics array base biology comparative computational data dnagenetics extramural genetic govt humans molecular nih numerical oligonucleotide phs probes research sequence study support transcription us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:39 as

Genome Res, Vol. 15, No. 8. (Aug 2005), pp. 1034-1050.

by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler

posted to 0900 20050719 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:38 as

Nucleic Acids Res, Vol. 33, No. Database issue. (Jan 2005), pp. D447-D453.

by T Hubbard, D Andrews, M Caccamo, G Cameron, Y Chen, M Clamp, L Clarke, G Coates, T Cox, F Cunningham, V Curwen, T Cutts, T Down, R Durbin, Fernandez XM Suarez, J Gilbert, M Hammond, J Herrero, H Hotz, K Howe, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, F Kokocinsci, D London, I Longden, G Mcvicker, C Melsopp, P Meidl, S Potter, G Proctor, M Rae, D Rios, M Schuster, S Searle, J Severin, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, S Trevanion, Ureta A Vidal, J Vogel, S White, C Woodwark, E Birney

posted to 0900 20050416 acid alignment animals base cattle databases dogs genomics govt humans interface internet mice non-us nucleic phs rats research sequence software support us user-computer by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as

Plant J, Vol. 43, No. 4. (Aug 2005), pp. 611-621.

by T Toyoda, K Shinozaki

posted to 0900 20050816 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:37 as

Trends Genet, Vol. 16, No. 1. (Jan 2000), pp. 44-47.

by KD Pruitt, KS Katz, H Sicotte, DR Maglott

posted to 0900 20000226 databases factual genome human humans internet by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as

Genome Biol, Vol. 6, No. 8. (2005)

by AS Brodsky, CA Meyer, IA Swinburne, G Hall, BJ Keenan, XS Liu, EA Fox, PA Silver

posted to 0900 20050810 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as

Bioinformatics, Vol. 21 Suppl 1 (Jun 2005), pp. i274-i282.

by W Li, CA Meyer, XS Liu

posted to 0900 20050618 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:32 as

Cell, Vol. 119, No. 6. (Dec 2004), pp. 831-845.

by Z Wang, ME Rolish, G Yeo, V Tung, M Mawson, CB Burge

posted to 0900 20050317 a-bgenetics acidgenetics algorithms analysis animals base cells cluster computer cultured data elements exonsgenetics f-hgenetics gene govt group heterogeneous-nuclear humans library molecular non-phs non-us phs regulatory research ribonucleic ribonucleoprotein rna sequence sequences silencer simulation splicinggeneticsphysiology support transcriptionalgenetics us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:25 as

Proc Natl Acad Sci U S A, Vol. 102, No. 8. (Feb 2005), pp. 2850-2855.

by GW Yeo, E Van Nostrand, D Holste, T Poggio, CB Burge

posted to 0900 20050325 alternative animals base conserved evolution exons expressed govt humans mice non-phs non-us phs research sequence splicing support tags us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:24 as

Nature, Vol. 434, No. 7031. (Mar 2005), pp. 338-345.

by X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, Lindblad K Toh, ES Lander, M Kellis

posted to 0900 20050331 3 alignment animals base comparative conserved data dogs expression gene geneticsgenetics govt humans mammalsgenetics mice micrornasgeneticsmetabolism molecular organ phs profiling promoter rats regions regionsgenetics research sequence sequencegenetics specificity study support untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as

Nature (Jun 2005)

by TH Kim, LO Barrera, M Zheng, C Qu, MA Singer, TA Richmond, Y Wu, RD Green, B Ren

posted to 0900 20050701 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:20 as

BMC Bioinformatics, Vol. 6, No. 1. (May 2005)

by E Eyras, A Reymond, R Castelo, JM Bye, F Camara, P Flicek, EJ Huckle, G Parra, DD Shteynberg, C Wyss, J Rogers, SE Antonarakis, E Birney, R Guigo, MR Brent

posted to 0900 20050601 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:18 as

Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W465-W467.

by M Stanke, B Morgenstern

posted to 0900 20050628 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:17 as

Genome Res, Vol. 15, No. 4. (Apr 2005), pp. 577-582.

by C Wei, P Lamesch, M Arumugam, J Rosenberg, P Hu, M Vidal, MR Brent

posted to 0900 20050505 and animals biologymethods caenorhabditis cloning comparative computational databases elegansgenetics framesgenetics genes genetic genome genomics govt helminthgenetics introns molecularmethods non-phs open phs reading research sensitivity specificity study support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as

Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W451-W454.

by J Besemer, M Borodovsky

posted to 0900 20050628 by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:13 as

Curr Opin Struct Biol, Vol. 14, No. 3. (Jun 2004), pp. 264-272.

by MR Brent, R Guigo

posted to 0900 20041230 acid animals base conformation exons genes genomicstrends govt humans introns models molecular non-phs non-us nucleic phs proteinschemistrygeneticsmetabolism research sequence support us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:12 as

Genome Res, Vol. 15, No. 5. (May 2005), pp. 742-747.

by RH Brown, SS Gross, MR Brent

posted to dna evaluation exonsgenetics extramural genesgenetics genetic genome genomicsmethods govt human humans initiation models molecular nih phs regionsgenetics research sequence 0900 20050610 5 analysis base biologymethods computational data site studies support transcription untranslated us by kaspermunch to the group Bioinformatics on 2006-11-02 10:08:09 as

Science, Vol. 306, No. 5696. (Oct 2004), pp. 655-660.

by V Stolc, Z Gauhar, C Mason, G Halasz, MF van Batenburg, SA Rifkin, S Hua, T Herreman, W Tongprasit, PE Barbano, HJ Bussemaker, KP White

posted to 0900 20041216 algorithms analysis animals array biology computational cycle