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Group: EisenLab - with tag transcription [39 articles]

Neue Artikel von Mitliedern der Gruppe EisenLab Gruppe with tag transcription
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cis-regulatory transcription by stajich to the group EisenLab on 2008-02-04 08:13:01 as ** along with 4 people and 2 groups dpollard mimulus_99 brant djkt RockmanLab cis-regulatory-evolution
  • Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins.
    Proc Natl Acad Sci U S A, Vol. 104, No. 42. (16 October 2007), pp. 16615-16620.
    by C Beisel, A Buness, IM Roustan-Espinosa, B Koch, S Schmitt, SA Haas, M Hild, T Katsuyama, R Paro
    posted to chip_chip chromatin_modification drosophila transcription by dpollard to the group EisenLab on 2007-10-25 01:52:45 as **
  • Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e117.
    by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F Wieschaus
    posted to zygotic transcription by brant to the group EisenLab on 2007-07-24 22:04:46 as ** along with 2 people dpollard epigenetics
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to transcription round_robin network matt_presented epistasis eisen_journal_club by dpollard to the group EisenLab on 2007-06-04 22:39:00 as ** along with 9 people and 5 groups mapplab czeller xico nickluscombe zwang lizabeth dejori xingxu naegele Bioinformatics WetBiology EBI-regulation ic4 generif_paper
  • A SNP in a half-binding site creates p53 and estrogen receptor control of VEGFR-1.
    Mol Cell Biol (22 January 2007)
    by Daniel Menendez, Alberto Inga, Joyce Snipe, Oliver Krysiak, Gilbert Schönfelder, Michael A A Resnick
    posted to transcription polymorphism binding_site by dpollard to the group EisenLab on 2007-02-01 19:55:01 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory
    BMC Bioinformatics, Vol. 8 (23 January 2007), 20.
    by Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J Ortoleva
    posted to transcription network model by dpollard to the group EisenLab on 2007-02-01 19:52:23 as ** along with 3 people aswin shigepong bertelsen
  • The Proteasome Restricts Permissive Transcription at Tissue-Specific Gene Loci in Embryonic Stem Cells
    Cell, Vol. 127, No. 7. (29 December 2006), pp. 1375-1388.
    by Henrietta Szutorisz, Andrew Georgiou, Laszlo Tora, Niall Dillon
    posted to transcription stem_cells proteasome by brant to the group EisenLab on 2007-01-26 02:22:29 as *** along with 2 people jjray tdmckee
  • Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks.
    PLoS Comput Biol, Vol. 2, No. 12. (22 December 2006)
    by Christopher E E Hart, Eric Mjolsness, Barbara J J Wold
    posted to yeast transcription network by dpollard to the group EisenLab on 2007-01-19 16:58:55 as ** along with 1 person mhucka
  • Phenotypic Consequences of Promoter-Mediated Transcriptional Noise
    Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 853-865.
    by William J Blake, Gabor Balazsi, Michael A Kohanski, Farren J Isaacs, Kevin F Murphy, Yina Kuang, Charles R Cantor, David R Walt, James J Collins
    posted to transcription noise by emilyhare to the group EisenLab on 2007-01-17 04:20:21 as ** along with 3 people dbikard timflutre margaritis
  • Transcription of bxd Noncoding RNAs Promoted by Trithorax Represses Ubx in cis by Transcriptional Interference
    Cell, Vol. 127, No. 6. (15 December 2006), pp. 1209-1221.
    by Svetlana Petruk, Yurii Sedkov, Kristen M Riley, Jacob Hodgson, Francois Schweisguth, Susumu Hirose, James B Jaynes, Hugh W Brock, Alexander Mazo
    posted to transcription regulation ncrna by emilyhare to the group EisenLab on 2007-01-16 23:03:58 as ** along with 1 person gsrats
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard to the group EisenLab on 2006-11-07 00:22:07 as read along with 6 people and 1 group emptyhb briann adepace lusk nklee cisevol cis-regulatory-evolution
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard to the group EisenLab on 2006-10-11 18:29:07 as read
  • Dynamics of heat shock factor association with native gene loci in living cells
    Nature, Vol. 442, No. 7106. (23 August 2006), pp. 1050-1053.
    by Jie Yao, Katherine M Munson, Watt W Webb, John T Lis
    posted to subnuclear_localization transcription by brant to the group EisenLab on 2006-09-02 20:14:15 as *** along with 1 person skoch3
  • Regulatory Blueprint for a Chordate Embryo
    Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187.
    by Kaoru S Imai, Michael Levine, Nori Satoh, Yutaka Satou
    posted to ciona network transcription by emilyhare to the group EisenLab on 2006-07-13 01:13:08 as ** along with 4 people and 1 group dquest nirfriedman nickluscombe noano EBI-regulation
  • Transcriptional Pulsing of a Developmental Gene
    Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025.
    by Jonathan R Chubb, Tatjana Trcek, Shailesh M Shenoy, Robert H Singer
    posted to transcription by emilyhare to the group EisenLab on 2006-07-12 00:34:31 as ** along with 3 people jjray qfwills margaritis
  • Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs.
    Gene (5 June 2006)
    by Jun-Ichi I Hikima, Mara L L Lennard, Melanie R R Wilson, Norman W W Miller, Gregory W W Warr
    posted to binding grammar motif promoter spacing transcription by dpollard to the group EisenLab on 2006-06-16 20:44:19 as **
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to binding motif prediction structure transcription by dpollard to the group EisenLab on 2006-06-16 20:40:23 as ** along with 2 people samal nklee
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to binding evolution polymorphism promoter selection transcription turnover by dpollard to the group EisenLab on 2006-06-10 00:48:36 as **** along with 4 people and 1 group emptyhb kaarsinogen lusk cisevol cis-regulatory-evolution
  • Computational Models for Neurogenic Gene Expression in the Drosophila Embryo.
    Curr Biol (1 June 2006)
    by Robert P P Zinzen, Kate Senger, Mike Levine, Dmitri Papatsenko
    posted to drosophila expression network prediction transcription by dpollard to the group EisenLab on 2006-06-09 23:01:14 as ** along with 2 people klo emilyhare
  • Coactivator cross-talk specifies transcriptional output.
    Genes Dev, Vol. 20, No. 11. (1 June 2006), pp. 1458-1469.
    by MT Marr, Y Isogai, KJ Wright, R Tjian
    posted to coactivator drosophila regulation transcription by dpollard to the group EisenLab on 2006-06-09 22:54:57 as **
  • Flexible promoter architecture requirements for coactivator recruitment
    BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16.
    by Derek Y Chiang, David A Nix, Ryan K Shultzaberger, Audrey P Gasch, Michael B Eisen
    posted to binding expression grammar promoter spacing transcription yeast by dpollard to the group EisenLab on 2006-05-21 05:08:26 as ***** along with 1 person postrational
  • Evolutionary turnover of mammalian transcription start sites.
    Genome Res (10 May 2006)
    by Martin C C Frith, Jasmina Ponjavic, David Fredman, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayshizaki, Albin Sandelin
    posted to alignment conserved evolution gene mammal promoter transcription turnover vertebrate by dpollard to the group EisenLab on 2006-05-12 17:41:10 as ** along with 4 people and 2 groups cmm jsnoddy cisevol gjuggler FAB-lab cis-regulatory-evolution
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard to the group EisenLab on 2006-05-01 22:45:46 as **
  • Periodicity of SNP distribution around transcription start sites.
    BMC Genomics, Vol. 7, No. 1. (3 April 2006)
    by Koichiro Higasa, Kenshi Hayashi
    posted to chimp human nucleosome promoter snps transcription by dpollard to the group EisenLab on 2006-04-08 23:07:47 as ** along with 1 person samal
  • Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex.
    Dev Biol (16 March 2006)
    by Omar S S Akbari, Adam Bousum, Esther Bae, Robert A A Drewell
    posted to drosophila hox mechanism regulation transcription by dpollard to the group EisenLab on 2006-04-02 23:06:26 as **
  • Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites.
    Genes Dev (17 March 2006)
    by Jay Z Z Parrish, Michael D D Kim, Lily Yeh Y Jan, Yuh Nung N Jan
    posted to binding brain development drosophila nervous neuro system transcription by dpollard to the group EisenLab on 2006-03-31 23:44:47 as **
  • Genome-wide expression dynamics during mouse embryonic development reveal similarities to Drosophila development.
    Dev Biol, Vol. 288, No. 2. (15 December 2005), pp. 595-611.
    by RA Wagner, R Tabibiazar, A Liao, T Quertermous
    posted to conserved development drosophila embryo expression gene insect mouse pattern transcription vertebrate by dpollard to the group EisenLab on 2006-03-21 20:22:42 as **
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
    posted to binding grammar transcription yeast by dpollard to the group EisenLab on 2006-03-21 20:03:38 as *** along with 7 people chrn tabu samal adepace lewbin nklee xili03
  • Integrating genomic data to predict transcription factor binding.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94.
    by DT Holloway, M Kon, C DeLisi
    posted to binding data genomic integration prediction transcription by dpollard to the group EisenLab on 2006-03-21 19:53:19 as ** along with 3 people malcook adsmitty nklee
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
    posted to gene genetic multi-copy non-essential placticity transcription variation yeast by dpollard to the group EisenLab on 2006-03-21 19:21:02 as *** along with 2 people caseybrown aubinhon
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
    posted to binding factor selex transcription by indigoviolet to the group EisenLab on 2006-02-26 00:56:38 as **** along with 4 people emilyhare samal stsaft blobbybirdman
  • Noncoding RNAs of Trithorax Response Elements Recruit Drosophila Ash1 to Ultrabithorax.
    Science, Vol. 311, No. 5764. (24 February 2006), pp. 1118-1123.
    by T Sanchez-Elsner, D Gou, E Kremmer, F Sauer
    posted to cis-regulation drosophila geneexpression microrna transcription by indigoviolet to the group EisenLab on 2006-02-26 00:50:46 as **** along with 2 people mtagaya gsrats
  • Nup-PI: The Nucleopore-Promoter Interaction of Genes in Yeast
    Molecular Cell, Vol. 21, No. 3. (3 February 2006), pp. 379-391.
    by Manfred Schmid, Ghislaine Arib, Caroline Laemmli, Junichi Nishikawa, Therese Durussel, Ulrich K Laemmli
    posted to nuclear-organization transcription by brant to the group EisenLab on 2006-02-05 13:28:14 as **
  • Filtering transcriptional noise during development: concepts and mechanisms
    Nature Reviews Genetics, Vol. 7, No. 1., pp. 34-44.
    by Alfonso M Arias, Penelope Hayward
    posted to noise transcription by emilyhare to the group EisenLab on 2006-01-13 02:05:49 as read along with 2 people dbikard margaritis
  • Genome Biology | Full text | The design of transcription-factor binding sites is affected by combinatorial regulation
    posted to binding cis-regulation computational constraint factor transcription yeast by indigoviolet to the group EisenLab on 2005-12-06 03:51:51 as ***
  • Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
    Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2695-2704.
    by Joseph A Martens, Pei-Yun J Wu, Fred Winston
    posted to cis-regulation enhancer geneexpression intergenic transcription yeast by indigoviolet to the group EisenLab on 2005-11-16 22:58:58 as ** along with 1 person dpollard
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to bicoid drosophila embryo expression factor gene gradient target transcription by indigoviolet to the group EisenLab on 2005-11-14 04:18:04 as *** along with 4 people imouthesmp mystery balicea emptyhb
  • The T-box-encoding Dorsocross genes function in amnioserosa development and the patterning of the dorsolateral germ band downstream of Dpp.
    Development, Vol. 130, No. 14. (July 2003), pp. 3187-3204.
    by I Reim, HH Lee, M Frasch
    posted to development patterning tissue transcription by brant to the group EisenLab on 2005-11-13 18:50:00 as read
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to alignments binding conserved evolutionary factor model monkey multiple site transcription by indigoviolet to the group EisenLab on 2005-11-13 03:10:05 as read along with 5 people and 1 group ihpark tuck lusk Garamonfok cisevol cis-regulatory-evolution
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