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Group: EisenLab - with tag eisen_journal_club [97 articles]

Neue Artikel von Mitliedern der Gruppe EisenLab Gruppe with tag eisen_journal_club
  • Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e117.
    by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F Wieschaus
  • Global analysis of patterns of gene expression during Drosophila embryogenesis
    Genome Biology, Vol. 8 (23 July 2007), R145.
    by Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
  • Dissecting Timing Variability in Yeast Meiosis
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556.
    by Iftach Nachman, Aviv Regev, Sharad Ramanathan
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
  • Constraint and turnover in sex-biased gene expression in the genus Drosophila
    Nature, Vol. 450, No. 7167., pp. 233-237.
    by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver
  • Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome.
    Science (27 September 2007)
    by Jan O O Korbel, Alexander Eckehart E Urban, Jason P P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik F Simons, Philip M M Kim, Dean Palejev, Nicholas J J Carriero, Lei Du, Bruce E E Taillon, Zhoutao Chen, Andrea Tanzer, A C Eugenia C Saunders, Jianxiang Chi, Fengtang Yang, Nigel P P Carter, Matthew E E Hurles, Sherman M M Weissman, Timothy T T Harkins, Mark B B Gerstein, Michael Egholm, Michael Snyder
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
  • ZIPK: A Unique Case of Murine-Specific Divergence of a Conserved Vertebrate Gene.
    PLoS Genet, Vol. 3, No. 10. (19 October 2007)
    by Yishay Shoval, Shmuel Pietrokovski, Adi Kimchi
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
  • Predicting evolutionary patterns of mammalian teeth from development.
    Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432.
    by KD Kavanagh, AR Evans, J Jernvall
    posted to colin_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-10-19 21:47:05 as ** along with 1 person smbe2008
  • Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15412-15417.
    by MA Rodriguez, D Vermaak, JJ Bayes, HS Malik
  • Members of a large retroposon family are determinants of post-transcriptional gene expression in leishmania.
    PLoS Pathog, Vol. 3, No. 9. (7 September 2007)
    posted to eisen_journal_club lenny_presented round_robin by dpollard to the group EisenLab on 2007-10-19 21:44:19 as **
  • Quantitative prediction of NF-kappa B DNA-protein interactions.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 8167-8172.
    by IA Udalova, R Mott, D Field, D Kwiatkowski
  • Heritable Stochastic Switching Revealed by Single-Cell Genealogy
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e239.
    by Benjamin B Kaufmann, Qiong Yang, Jerome T Mettetal, Alexander van Oudenaarden
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
  • Functional conservation of Rel binding sites in drosophilid genomes
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1327-1335.
    by Richard R Copley, Maxim Totrov, Jane Linnell, Simon Field, Jiannis Ragoussis, Irina A Udalova
  • Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
    Nature, Vol. 448, No. 7155., pp. 828-831.
    by Burckhard Seelig, Jack W Szostak
  • Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma
    Nature (04 July 2007)
    by Miriam F Moffatt, Michael Kabesch, Liming Liang, Anna L Dixon, David Strachan, Simon Heath, Martin Depner, Andrea von Berg, Albrecht Bufe, Ernst Rietschel, Andrea Heinzmann, Burkard Simma, Thomas Frischer, Saffron AG Willis-Owen, Kenny CC Wong, Thomas Illig, Christian Vogelberg, Stephan K Weiland, Erika von Mutius, Gonçalo R Abecasis, Martin Farrall, Ivo G Gut, Mark G Lathrop, William OC Cookson
  • Switching of the core transcription machinery during myogenesis.
    Genes Dev (17 August 2007)
    by Maria Divina E D Deato, Robert Tjian
    posted to round_robin eisen_journal_club colin_presented by dpollard to the group EisenLab on 2007-08-25 00:47:19 as **
  • Comparative Analysis of Structured RNAs in S. cerevisiae Indicates a Multitude of Different Functions
    BMC Biology, Vol. 5 (18 June 2007), 25.
    by Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F Stadler, Kay Nieselt
  • Design of Multi-Specificity in Protein Interfaces
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e164.
    by Elisabeth L Humphris, Tanja Kortemme
  • Innovation and robustness in complex regulatory gene networks.
    Proc Natl Acad Sci U S A (9 August 2007)
    by S Ciliberti, O C C Martin, A Wagner
  • Evolution of chromosome organization driven by selection for reduced gene expression noise
    Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949.
    by Nizar N Batada, Laurence D Hurst
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
  • Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
    Genome Biology, Vol. 8 (08 June 2007), R106.
    by Yavor Hadzhiev, Michael Lang, Raymond Ertzer, Axel Meyer, Uwe Straehle, Ferenc Mueller
  • A role for noncoding transcription in activation of the yeast PHO5 gene.
    Proc Natl Acad Sci U S A, Vol. 104, No. 19. (8 May 2007), pp. 8011-8016.
    by JP Uhler, C Hertel, JQ Svejstrup
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:33:51 as **
  • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.
    Nature, Vol. 429, No. 6991. (3 June 2004), pp. 571-574.
    by JA Martens, L Laprade, F Winston
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:32:49 as ** along with 2 people alexg maralena
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
  • Genome-enabled hitchhiking mapping identifies QTLs for stress resistance in natural Drosophila
    Heredity, Vol. aop, No. current.
    by SV Nuzhdin, LG Harshman, M Zhou, K Harmon
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-07-18 19:07:55 as **
  • Intronic microRNA precursors that bypass Drosha processing
    Nature (24 June 2007)
    by Graham J Ruby, Calvin H Jan, David P Bartel
  • Coevolution of genomic intron number and splice sites.
    Trends Genet, Vol. 23, No. 7. (July 2007), pp. 321-325.
    by M Irimia, D Penny, SW Roy
  • The mode and tempo of genome size evolution in eukaryotes.
    Genome Res (9 April 2007)
    by Matthew J J Oliver, Dmitri Petrov, David Ackerly, Paul Falkowski, Oscar M M Schofield
  • Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot.
    PLoS Genet, Vol. 3, No. 6. (22 June 2007)
    by Frédéric Baudat, Bernard de Massy
  • Chromosomal periodicity of evolutionarily conserved gene pairs
    PNAS (11 June 2007), 0610776104.
    by Matthew A Wright, Peter Kharchenko, George M Church, Daniel Segre
  • Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
    Genome Biology, Vol. 8 (05 June 2007), R101.
    by Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S Halfon
  • The human phylome
    Genome Biology, Vol. 8 (13 June 2007), R109.
    by Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón
  • Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster
    PNAS (11 June 2007), 0703988104.
    by Anastasios C Koutsos, Claudia Blass, Stephan Meister, Sabine Schmidt, Robert M Maccallum, Marcelo B Soares, Frank H Collins, Vladimir Benes, Evgeny Zdobnov, Fotis C Kafatos, George K Christophides
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
  • Pollinator shifts drive increasingly long nectar spurs in columbine flowers
    Nature, Vol. 447, No. 7145., pp. 706-709.
    by Justen B Whittall, Scott A Hodges
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-06-18 21:48:19 as **
  • Canalization of segmentation and its evolution in Drosophila.
    Proc Natl Acad Sci U S A (14 June 2007)
    by Susan E E Lott, Martin Kreitman, Arnar Palsson, Elena Alekseeva, Michael Z Z Ludwig
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-06-18 21:42:43 as ** along with 1 person emptyhb
  • A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e106.
    by Stephen B Montgomery, Obi L Griffith, Johanna M Schuetz, Angela Brooks-Wilson, Steven J Jones
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
  • Rapid Coevolution of the Nematode Sex-Determining Genes fem-3 and tra-2
    Current Biology, Vol. 12, No. 23. (10 December 2002), pp. 2035-2041.
    by Eric S Haag, Shanping Wang, Judith Kimble
    posted to round_robin eisen_journal_club angela_presented by dpollard to the group EisenLab on 2007-06-15 22:48:25 as **
  • Developmental system drift and flexibility in evolutionary trajectories.
    Evol Dev, Vol. 3, No. 2. (r 2001), pp. 109-119.
    by JR True, ES Haag
    posted to round_robin eisen_journal_club angela_presented by dpollard to the group EisenLab on 2007-06-15 22:43:27 as **
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