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Group: iSEEM - with tag metagenomic [51 articles]

Neue Artikel von Mitliedern der Gruppe iSEEM Gruppe with tag metagenomic
  • Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
    Science, Vol. 322, No. 5899. (10 October 2008), pp. 275-278.
    by Dylan Chivian, Eoin L Brodie, Eric J Alm, David E Culley, Paramvir S Dehal, Todd Z Desantis, Thomas M Gihring, Alla Lapidus, Li-Hung Lin, Stephen R Lowry, Duane P Moser, Paul M Richardson, Gordon Southam, Greg Wanger, Lisa M Pratt, Gary L Andersen, Terry C Hazen, Fred J Brockman, Adam P Arkin, Tullis C Onstott
  • Functional metagenomic profiling of nine biomes
    Nature, Vol. 455, No. 7214. (October 2008), pp. 830-830.
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
    posted to metagenomic empirical by djkt to the group iSEEM on 2008-10-08 20:45:02 as **
  • Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics
    Environmental Microbiology, Vol. 10, No. 3. (March 2008), pp. 727-737.
    posted to symbiosis metagenomic by djkt to the group iSEEM on 2008-09-17 19:12:03 as **
  • Quantitative assessment of protein function prediction from metagenomics shotgun sequences
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13913-13918.
    by ED Harrington, AH Singh, T Doerks, I Letunic, C von Mering, LJ Jensen, J Raes, P Bork
    posted to protein metagenomic functional by djkt to the group iSEEM on 2008-09-17 19:05:23 as ** along with 3 people michC bluto larsjuhljensen
  • Get the most out of your metagenome: computational analysis of environmental sequence data.
    Current opinion in microbiology, Vol. 10, No. 5. (October 2007), pp. 490-498.
    by J Raes, KU Foerstner, P Bork
    posted to minimess metagenomic by djkt to the group iSEEM on 2008-09-17 18:46:49 as ** along with 2 people Pascalichouchou druvus
  • Metagenomics reveals our incomplete knowledge of global diversity.
    Bioinformatics (Oxford, England) (13 July 2008)
    by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames
  • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    Nature (20 July 2008)
    by Julius S Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs
    posted to archaea ecology empirical metagenomic microbe ocean by djkt to the group iSEEM on 2008-08-20 20:15:03 as *** along with 2 people claymans neils
  • The Airborne Metagenome in an Indoor Urban Environment
    PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862.
    by Susannah G Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah H Lee, Jennifer Yap, Fei Yao, Sim T Suan, Seah K Ing, Matthew Haynes, Forest Rohwer, Chia L Wei, Patrick Tan, James Bristow, Edward M Rubin, Yijun Ruan
    posted to 16s empirical metagenomic by djkt to the group iSEEM on 2008-08-15 17:55:03 as *** along with 1 person semrich
  • Binning sequences using very sparse labels within a metagenome
    BMC Bioinformatics, Vol. 9 (28 April 2008), 215.
    by Chon-Kit K Chan, Arthur L Hsu, Saman K Halgamuge, Sen-Lin Tang
  • MEGAN analysis of metagenomic data
    Genome Res.
    posted to metagenomic ploscb08 by jlgreen to the group iSEEM on 2008-08-08 07:37:12 as **
  • Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
    ISME J, Vol. 2, No. 8. (May 2008), pp. 865-886.
    by Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, Jose C Alba, Elena Ivars-Martinez, Matthew R Henn, Emmanuel Talla, Purificacion Lopez-Garcia
    posted to diversity metagenomic ploscb08 by jlgreen to the group iSEEM on 2008-08-08 01:16:06 as ** along with 1 person and 1 group djkt Green Lab
  • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    PNAS
  • The rational exploration of microbial diversity
    ISME (2008)
    by Christopher Quince, Thomas P Curtis, William T Sloan
  • Microbiology in the post-genomic era
    Nature Reviews Microbiology, Vol. 6, No. 6. (13 May 2008), pp. 419-430.
    by Duccio Medini, Davide Serruto, Julian Parkhill, David A Relman, Claudio Donati, Richard Moxon, Stanley Falkow, Rino Rappuoli
  • From the Cover: Microbial community gene expression in ocean surface waters
    Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810.
    by Jorge Frias-Lopez, Yanmei Shi, Gene W Tyson, Maureen L Coleman, Stephan C Schuster, Sallie W Chisholm, Edward F Delong
  • Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
    Nature (07 March 2007)
    by Ian Lo, Vincent J Denef, Nathan C Verberkmoes, Manesh B Shah, Daniela Goltsman, Genevieve Dibartolo, Gene W Tyson, Eric E Allen, Rachna J Ram, Chris J Detter, Paul Richardson, Michael P Thelen, Robert L Hettich, Jillian F Banfield
  • A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder.
    Science (6 September 2007)
    by Diana L L Cox-Foster, Sean Conlan, Edward C C Holmes, Gustavo Palacios, Jay D D Evans, Nancy A A Moran, Phenix-Lan L Quan, Thomas Briese, Mady Hornig, David M M Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K Hutchison, Jan Fredrik F Simons, Michael Egholm, Jeffery S S Pettis, W Ian I Lipkin
  • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    Nature, Vol. 450, No. 7169., pp. 560-565.
    by Falk Warnecke, Peter Luginbühl, Natalia Ivanova, Majid Ghassemian, Toby H Richardson, Justin T Stege, Michelle Cayouette, Alice C Mchardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G Tringe, Mircea Podar, Hector G Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C Kyrpides, Eric G Matson, Elizabeth A Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D Green, Cathy Chang, Edward M Rubin, Eric J Mathur, Dan E Robertson, Philip Hugenholtz, Jared R Leadbetter
    posted to metagenomic termite by jlgreen to the group iSEEM on 2008-07-25 23:45:54 as read along with 4 people and 1 group bluto azazello wenhan carpi Green Lab
  • Metagenomics: DNA sequencing of environmental samples
    Nature Reviews Genetics, Vol. 6, No. 11. (01 November 2005), pp. 805-814.
    by Susannah G Tringe, Edward M Rubin
    posted to metagenomic ploscb08 review by jlgreen to the group iSEEM on 2008-07-25 23:40:45 as read along with 2 people and 1 group carpi mcox Green Lab
  • Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
    Environmental Microbiology, Vol. 9, No. 6. (June 2007), pp. 1464-1475.
  • Metagenomic Analysis of Coastal RNA Virus Communities
    Science, Vol. 312, No. 5781. (23 June 2006), pp. 1795-1798.
    by Alexander I Culley, Andrew S Lang, Curtis A Suttle
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
  • MICROBIAL COMMUNITY GENOMICS IN THE OCEAN
    Nat Rev Micro, Vol. 3, No. 6. (June 2005), pp. 459-469.
    by Edward F Delong
  • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    Biology Direct, Vol. 2 (07 November 2007), 27.
    by Larry J Wilhelm, James H Tripp, Scott A Givan, Daniel P Smith, Stephen J Giovannoni
    posted to metagenomic ocean ploscb08 by jlgreen to the group iSEEM on 2008-07-25 23:06:56 as ** along with 1 person and 1 group jmeppley Green Lab
  • Community genomics in microbial ecology and evolution
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 489-498.
    by Eric E Allen, Jillian F Banfield
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
  • Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    Nature (02 March 2008)
    by Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, Scott Kelley, Tuong Tran, Matthew Haynes, Hong Liu, Mike Furlan, Linda Wegley, Betty Chau, Yijun Ruan, Dana Hall, Florent E Angly, Robert A Edwards, Linlin Li, Rebecca V Thurber, Pamela R Reid, Janet Siefert, Valeria Souza, David L Valentine, Brandon K Swan, Mya Breitbart, Forest Rohwer
  • Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e82.
    by Jonathan A Eisen
  • Viral population estimation using pyrosequencing.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    posted to diversity metagenomic method popgen virus by djkt to the group iSEEM on 2008-07-24 23:16:52 as read along with 2 people jmeppley bmaust
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to metagenomic ploscb08 popgen by djkt to the group iSEEM on 2008-07-24 23:14:44 as read along with 2 people jmeppley bluto
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    PLoS Comput Biol, Vol. 4, No. 4. (18 April 2008), e1000057.
    by Jon Bohlin, Eystein Skjerve, David W Ussery
    posted to otu metagenomic by djkt to the group iSEEM on 2008-07-24 23:12:46 as read along with 1 person and 1 group jlgreen Green Lab
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
  • Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.
    PLoS Biol, Vol. 4, No. 6. (June 2006)
    by D Wu, SC Daugherty, SE Van Aken, GH Pai, KL Watkins, H Khouri, LJ Tallon, JM Zaborsky, HE Dunbar, PL Tran, NA Moran, JA Eisen
    posted to empirical metagenomic by djkt to the group iSEEM on 2008-07-24 22:43:18 as read along with 1 person operon
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
  • Bioinformatics for whole-genome shotgun sequencing of microbial communities.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by K Chen, L Pachter
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9 (23 January 2008), 34.
    by Patrick Schloss, Jo Handelsman
  • An application of statistics to comparative metagenomics.
    BMC Bioinformatics, Vol. 7, No. 1. (20 March 2006)
    by Beltran Rodriguez-Brito, Forest Rohwer, Robert Edwards
  • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
    Applied and environmental microbiology, Vol. 72, No. 10. (October 2006), pp. 6773-6779.
    posted to 16s diversity metagenomic method phylogenetics ploscb08 by djkt to the group iSEEM on 2008-07-24 18:30:20 as read along with 1 person sconlan
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
  • Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
  • Viral Population Estimation Using Pyrosequencing
    posted to 16s diversity metagenomic method ploscb08 popgen sequencing virus by djkt to the group iSEEM on 2008-07-24 17:37:55 as read
  • Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1047-1050.
    by Anders F Andersson, Jillian F Banfield
    posted to metagenomic virus by djkt to the group iSEEM on 2008-07-24 01:36:14 as ***
  • Microbial Ecology of Ocean Biogeochemistry: A Community Perspective
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1043-1045.
    by Suzanne L Strom
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
  • Trends in Selenium Utilization in Marine Microbial World Revealed through the Analysis of the Global Ocean Sampling (GOS) Project
    PLoS Genet, Vol. 4, No. 6. (13 June 2008), e1000095.
    by Yan Zhang, Vadim N Gladyshev
    posted to biogeography gos metagenomic ploscb08 by djkt to the group iSEEM on 2008-07-24 01:32:28 as read along with 1 person xingxu
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
  • Taxonomic distribution of large DNA viruses in the sea
    Genome Biology, Vol. 9, No. 7. (2008)
    by Adam Monier, Jean M Claverie, Hiroyuki Ogata
    posted to empirical metagenomic phylogenetics ploscb08 virus by djkt to the group iSEEM on 2008-07-24 01:28:02 as ** along with 1 person neils
  • Metagenomics: genomic analysis of microbial communities.
    Annu Rev Genet, Vol. 38 (2004), pp. 525-552.
  • Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e177.
    by Sheri L Simmons, Genevieve Dibartolo, Vincent J Denef, Daniela S Goltsman, Michael P Thelen, Jillian F Banfield
    posted to empirical metagenomic ploscb08 popgen by djkt to the group iSEEM on 2008-07-24 01:22:37 as ***
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