JASPAR: an open-access database for eukaryotic transcription factor binding profiles.

@article{sandalin2004, abstract = {The analysis of regulatory regions in genome sequences is strongly based on the detection of potential transcription factor binding sites. The preferred models for representation of transcription factor binding specificity have been termed position-specific scoring matrices. JASPAR is an open-access database of annotated, high-quality, matrix-based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived exclusively from sets of nucleotide sequences experimentally demonstrated to bind transcription factors. The database is complemented by a web interface for browsing, searching and subset selection, an online sequence analysis utility and a suite of programming tools for genome-wide and comparative genomic analysis of regulatory regions. JASPAR is available at http://jaspar. cgb.ki.se.}, address = {Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius v\"{a}g 35, S-17177 Stockholm, Sweden.}, author = {Sandelin, A. and Alkema, W. and Engstr\"{o}m, P. and Wasserman, W. W. and Lenhard, B. }, citeulike-article-id = {827938}, issn = {1362-4962}, journal = {Nucleic Acids Res}, keywords = {database, eukaryotic, jaspar}, month = {January}, number = {Database issue}, posted-at = {2008-04-01 02:08:44}, priority = {0}, title = {JASPAR: an open-access database for eukaryotic transcription factor binding profiles.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/14681366}, volume = {32}, year = {2004} }

TY - JOUR ID - sandalin2004 L3 - citeulike-article-id:827938 N2 - The analysis of regulatory regions in genome sequences is strongly based on the detection of potential transcription factor binding sites. The preferred models for representation of transcription factor binding specificity have been termed position-specific scoring matrices. JASPAR is an open-access database of annotated, high-quality, matrix-based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived exclusively from sets of nucleotide sequences experimentally demonstrated to bind transcription factors. The database is complemented by a web interface for browsing, searching and subset selection, an online sequence analysis utility and a suite of programming tools for genome-wide and comparative genomic analysis of regulatory regions. JASPAR is available at http://jaspar. cgb.ki.se. IS - Database issue JF - Nucleic Acids Res SN - 1362-4962 AD - Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius väg 35, S-17177 Stockholm, Sweden. TI - JASPAR: an open-access database for eukaryotic transcription factor binding profiles. VL - 32 KW - database KW - eukaryotic KW - jaspar AU - Sandelin, A AU - Alkema, W AU - Engström, P AU - Wasserman, WW AU - Lenhard, B PY - 2004/01/01/ UR - http://view.ncbi.nlm.nih.gov/pubmed/14681366 ER -