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Group: Berkeley Mycology - library [482 articles]

Neue Artikel von Mitliedern der Gruppe Berkeley Mycology Gruppe
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  • Phage-Mediated Intergeneric Transfer of Toxin Genes
    Science, Vol. 323, No. 5910. (2 January 2009), pp. 139-141.
    by John Chen, Richard P Novick
    posted to toxin horizontal_gene_transfer gene bacteria by stajich to the group Berkeley Mycology on 2009-01-03 19:43:57 as ** along with 2 people mlangill ramanuja
  • High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer
    PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108.
    by Shin-Ichi Hashimoto, Wei Qu, Budrul Ahsan, Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C Lee, Robert C Nutter, Shinichi Morishita, Kouji Matsushima
    posted to tag nextgensequencing annotation 5prime 5 by stajich to the group Berkeley Mycology on 2009-01-02 19:12:12 as ** along with 2 people GustavoLacerda Cortel
  • Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays
    BMC Genomics, Vol. 9 (31 December 2008), 635.
    by Michael, Mark Gerstein
    posted to resequencing microarray genotype by stajich to the group Berkeley Mycology on 2009-01-02 04:18:19 as **
  • A seat at the table
    Genome Biology, Vol. 9, No. 12. (2008)
    by Gregory Petsko
    posted to editorial by stajich to the group Berkeley Mycology on 2008-12-31 23:41:08 as ** along with 1 person dullhunk
  • Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts
    BMC Evolutionary Biology, Vol. 8 (29 December 2008), 343.
    by Huifeng, Zhenglong Gu
    posted to genome codon_bias ashbya by stajich to the group Berkeley Mycology on 2008-12-30 05:39:38 as **
  • Caenorhabditis elegans Meets Microsporidia: The Nematode Killers from Paris
    PLoS Biology, Vol. 6, No. 12. (1 December 2008), e5.
    by Jonathan Hodgkin, Frederick A Partridge
    posted to pathogen nematode model_system microsporidia by stajich to the group Berkeley Mycology on 2008-12-29 19:18:43 as **
  • "REVERSE ECOLOGY" AND THE POWER OF POPULATION GENOMICS
    Evolution, Vol. 62, No. 12. (2008), pp. 2984-2994.
    by Yong F Li, James C Costello, Alisha K Holloway, Matthew W Hahn
    posted to selection_test selection positive_selection population_genomics molecular_evolution coccipopgen by stajich to the group Berkeley Mycology on 2008-12-29 18:27:20 as ** along with 1 person jbsaltz
  • FLO1 Is a Variable Green Beard Gene that Drives Biofilm-like Cooperation in Budding Yeast
    Cell, Vol. 135, No. 4. (14 November 2008), pp. 726-737.
    by S Smukalla, M Caldara, N Pochet, A Beauvais, S Guadagnini, C Yan, M Vinces, A Jansen, M Prevost, J Latge
    posted to yeast saccharomyces fungi floculation cooperation cell_wall cell_surface biofilm by stajich to the group Berkeley Mycology on 2008-12-29 17:13:56 as **
  • I Am Not a Scientist, I Am a Number
    PLoS Comput Biol, Vol. 4, No. 12. (26 December 2008), e1000247.
    by Philip E Bourne, Lynn J Fink
    posted to publishing by stajich to the group Berkeley Mycology on 2008-12-27 00:31:54 as ** along with 16 people and 1 group jcaddy demo mmarois Yanno OriginalLurch GustavoLacerda allysonlister dswan nuin sebastien_vigneau Zephyrus thomaskelder rs dbk dullhunk kshameer Roswell Cancer Crosstalk
  • Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa.
    Genome research (17 December 2008)
    by Zachary A A Lewis, Shinji Honda, Tamir K K Khlafallah, Jennifer K K Jeffress, Michael Freitag, Fabio Mohn, Dirk Schubeler, Eric U U Selker
    posted to rip neurospora histone heterochromatin h3k9 by stajich to the group Berkeley Mycology on 2008-12-24 04:07:37 as ** along with 1 person rjlawren
  • The Population Genetics of dN/dS
    PLoS Genet, Vol. 4, No. 12. (12 December 2008), e1000304.
    by Sergey Kryazhimskiy, Joshua B Plotkin
    posted to selection_test selection positive_selection population_genomics population_genetics natural_selection molecular_evolution by stajich to the group Berkeley Mycology on 2008-12-17 19:14:14 as ** along with 9 people and 1 group zwang nuin bpcusack Zephyrus balicea renewang michaelbarton druvus djkt R.E.A.D
  • Where Do Introns Come From?
    PLoS Biology, Vol. 6, No. 11. (1 November 2008), e283.
    by Francesco Catania, Michael Lynch
    posted to intron evolutionary_theory evolution by stajich to the group Berkeley Mycology on 2008-12-15 04:42:34 as ** along with 12 people and 2 groups GustavoLacerda myzhang andreasapostolides alipi Zephyrus natstreet druvus dchughes clearbluespring djkt barry xianjun R.E.A.D McCammon
  • An Analysis of Structural Influences on Selection in RNA Genes
    Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 209-216.
    by Naila K Mimouni, Rune B Lyngso, Sam Griffiths-Jones, Jotun Hein
    posted to selection noncoding_rna molecular_evolution computational_biology by stajich to the group Berkeley Mycology on 2008-12-15 04:41:09 as ** along with 1 person djkt
  • Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence
    Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 143-153.
    by Cadhla Ramsden, Edward C Holmes, Michael A Charleston
    posted to virus rodent pathogen evolution cospeciation co-evolution by stajich to the group Berkeley Mycology on 2008-12-15 04:38:12 as **
  • The Secretin GPCRs Descended from the Family of Adhesion GPCRs
    Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 71-84.
    by Karl J Nordstrom, Malin C Lagerstrom, Linn M Waller, Robert Fredriksson, Helgi B Schioth
    posted to multicellular gpcr evolution cell_wall cell_surface by stajich to the group Berkeley Mycology on 2008-12-15 04:35:52 as **
  • Cryptococcus keelungensis sp. nov., an anamorphic basidiomycetous yeast isolated from the sea-surface microlayer of the north-east coast of Taiwan.
    International journal of systematic and evolutionary microbiology, Vol. 58, No. Pt 12. (December 2008), pp. 2973-2976.
    by CF Chang, CF Lee, SM Liu
    posted to cryptococcus basidiomycota by stajich to the group Berkeley Mycology on 2008-12-15 00:23:17 as **
  • Phylogenomic Analyses Support the Monophyly of Taphrinomycotina, including Schizosaccharomyces Fission Yeasts
    Mol Biol Evol, Vol. 26, No. 1. (1 January 2009), pp. 27-34.
    by Yu Liu, Jessica W Leigh, Henner Brinkmann, Melanie T Cushion, Naiara Rodriguez-Ezpeleta, Herve Philippe, Franz B Lang
    posted to pombe phylogenomics gene_tree by stajich to the group Berkeley Mycology on 2008-12-13 01:43:31 as **
  • Evidence for a New Root of the Tree of Life
    Systematic Biology, Vol. 57, No. 6. (2008), pp. 835-843.
    by James A Lake, Jacqueline A Servin, Craig W Herbold, Ryan G Skophammer
    posted to treeoflife tree phylogeny phylogenetics by stajich to the group Berkeley Mycology on 2008-12-11 21:18:55 as **
  • SNPFile - A software library and file format for large scale association mapping and population genetics studies
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jesper Nielsen, Thomas Mailund
    posted to snp population_genomics infrastructure computational_biology bioinformatics association_study by stajich to the group Berkeley Mycology on 2008-12-11 21:02:27 as ** along with 6 people and 1 group misonneh Zephyrus druvus guhjy pkonings j1n3l0 Roswell Cancer Crosstalk
  • De novo fragment assembly with short mate-paired reads: Does the read length matter?
    Genome research (3 December 2008)
    by Mark Jp J Chaisson, Dumitru Brinza, Pavel A A Pevzner
    posted to solexa shortread sequencing genome assembly by stajich to the group Berkeley Mycology on 2008-12-08 19:48:45 as ** along with 5 people nmohelli jbhiatt druvus hpaces GustavoLacerda
  • Discovery of a sexual cycle in the opportunistic fungal pathogen Aspergillus fumigatus
    Nature (30 November 2008)
    by Céline M Ogorman, Hubert T Fuller, Paul S Dyer
    posted to sexual_development meiosis fungi aspergillus by stajich to the group Berkeley Mycology on 2008-12-08 02:39:53 as ** along with 1 person bcondon
  • EnsemblCompara GeneTrees: Analysis of complete, duplication aware phylogenetic trees in vertebrates.
    Genome research (24 November 2008)
    by Albert J J Vilella, Jessica Severin, Abel Ureta-Vidal, Richard Durbin, Li Heng, Ewan Birney
    posted to vertebrate tree phylogenetics gene_tree evolution ensemblcompara ensembl duplication comparative_genomics by stajich to the group Berkeley Mycology on 2008-12-01 18:58:31 as ** along with 2 people birney gjuggler
  • The -1,3-glucanosyltransferase gas4p is essential for ascospore wall maturation and spore viability in Schizosaccharomyces pombe
    Molecular Microbiology, Vol. 68, No. 5. (June 2008), pp. 1283-1299.
    by De Medina-Redondo, Maria, Arnaiz-Pita, Yolanda, Fontaine, Thierry, Del Rey, Francisco, Latge, Jean Paul, De Aldana, Carlos R Vazquez
    posted to spore pombe fungi cell_wall ascospore by stajich to the group Berkeley Mycology on 2008-12-01 06:44:44 as ** along with 1 person bcondon
  • The Early Evolution of the Phosphagen Kinases—Insights from Choanoflagellate and Poriferan Arginine Kinases
    Journal of Molecular Evolution, Vol. 66, No. 1. (24 January 2008), pp. 11-20.
    by Maria Conejo, Matt Bertin, Shirley Pomponi, W Ellington
    posted to opisthokont multicellular evolution by stajich to the group Berkeley Mycology on 2008-12-01 06:43:53 as **
  • High-resolution statistical mapping reveals gene territories in live yeast
    Nat Meth, Vol. 5, No. 12. (December 2008), pp. 1031-1037.
    by Axel B Berger, Ghislain G Cabal, Emmanuelle Fabre, Tarn Duong, Henri Buc, Ulf Nehrbass, Jean-Christophe Olivo-Marin, Olivier Gadal, Christophe Zimmer
    posted to transcription nucleus live_imaging expression by stajich to the group Berkeley Mycology on 2008-11-25 22:35:59 as ** along with 3 people Annab druvus lp2
  • Titration of repeat-induced point mutation (RIP) by chromosome segment duplications in Neurospora crassa.
    Genetica, Vol. 134, No. 3. (November 2008), pp. 267-275.
    by PK Singh, DP Kasbekar
    posted to rip genome evolution by stajich to the group Berkeley Mycology on 2008-11-23 21:21:05 as **
  • Moniliophthora perniciosa, the causal agent of witches broom disease of cacao: what's new from this old foe?
    Molecular Plant Pathology, Vol. 9, No. 5. (September 2008), pp. 577-588.
    by Lyndel W Meinhardt, Johana Rincones, Bryan A Bailey, Catherine M Aime, Gareth W Griffith, Dapeng Zhang, Goncalo A Pereira
    posted to moniliophthora genome cacao by stajich to the group Berkeley Mycology on 2008-11-23 21:20:49 as ** along with 1 person GustavoLacerda
  • A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Jorge Mondego, Marcelo Carazzolle, Gustavo Costa, Eduardo Formighieri, Lucas Parizzi, Johana Rincones, Carolina Cotomacci, Dirce Carraro, Anderson Cunha, Helaine Carrer, Ramon Vidal, Raissa Estrela, Odalys Garcia, Daniela Thomazella, Bruno de Oliveira, Acassia Pires, Maria C Rio, Marcos R Araujo, Marcos de Moraes, Luis Castro, Karina Gramacho, Marilda Goncalves, Jose M Neto, Aristoteles G Neto, Luciana Barbosa, Mark Guiltinan, Bryan Bailey, Lyndel Meinhardt, Julio Cascardo, Goncalo Pereira
    posted to witchesbroom plantpathogen moniliophthora genome fungi cacao by stajich to the group Berkeley Mycology on 2008-11-23 21:20:31 as ** along with 1 person GustavoLacerda
  • Mechanism of phototaxis in marine zooplankton
    Nature, Vol. 456, No. 7220., pp. 395-399.
    by Gáspár Jékely, Julien Colombelli, Harald Hausen, Keren Guy, Ernst Stelzer, François Nédélec, Detlev Arendt
    posted to phototaxis photoreceptor marine by stajich to the group Berkeley Mycology on 2008-11-20 17:43:18 as ** along with 1 person carlfulp
  • BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Tim Hulsen, Jacob de Vlieg, Wynand Alkema
    posted to bioinformatics by stajich to the group Berkeley Mycology on 2008-11-19 20:29:37 as ** along with 19 people and 1 group lscarafia jmeppley hessec GustavoLacerda dswan polivares egonw ptrobajo guhjy jameswasmuth lptolik msampson pengchy natstreet druvus barriot Zephyrus cisevol thulsen BergmanLab
  • A Novel Gene Family Controls Species-Specific Morphological Traits in Hydra
    PLoS Biology, Vol. 6, No. 11. (1 November 2008), e278.
    by Konstantin Khalturin, Friederike Anton-Erxleben, Sylvia Sassmann, Jörg Wittlieb, Georg Hemmrich, Thomas C Bosch
    posted to subtractive_hybridization species-specific morphology molecular_evolution lineage-specific hydra gene_expression gene evolution by stajich to the group Berkeley Mycology on 2008-11-18 23:05:44 as ** along with 3 people biomcgary grahamc djkt
  • Uncorrected nucleotide bias in mtDNA can mimic the effects of positive Darwinian selection.
    Molecular biology and evolution (8 October 2008)
    by Mihai Albu, Xiang Jia J Min, Donal Hickey, Brian Golding
    posted to positive_selection molecular_evolution by stajich to the group Berkeley Mycology on 2008-11-18 18:27:39 as ** along with 3 people GustavoLacerda djkt nuin
  • Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System
    PLoS Biology, Vol. 6, No. 10. (1 October 2008), e255.
    by Daniel J Hogan, Daniel P Riordan, André P Gerber, Daniel Herschlag, Patrick O Brown
    posted to saccharomyces rna_binding regulation gene_regulation gene_expression by stajich to the group Berkeley Mycology on 2008-11-17 01:31:54 as ** along with 4 people kieran101 reyez zwang djkt
  • Transitions in Sexuality: Recapitulation of an Ancestral Tri- and Tetrapolar Mating System in Cryptococcus neoformans
    Eukaryotic Cell, Vol. 7, No. 10. (1 October 2008), pp. 1847-1855.
    by Yen-Ping Hsueh, James A Fraser, Joseph Heitman
    posted to mating_type mating_systems mating_genes fungi evolution cryptococcus basidiomycota by stajich to the group Berkeley Mycology on 2008-11-17 00:10:59 as **
  • MicroRNAs - Genomics, Biogenesis, Mechanism, and Function
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297.
    by DP Bartel
    posted to smallrna_paper smallrna noncoding_rna mirna genomics by stajich to the group Berkeley Mycology on 2008-11-04 22:53:25 as ** along with 4 people and 1 group bsamal cdawson ealloza xico GIG
  • Molecular Population Genetics and Evolution of Drosophila Meiosis Genes
    Genetics (3 November 2008), genetics.108.093807.
    by Jennifer A Anderson, William D Gilliland, Charles H Langley
    posted to positive_selection population_genetics meiosis evolution drosophila by stajich to the group Berkeley Mycology on 2008-11-04 05:52:02 as ** along with 1 person druvus
  • Population Genetic Inference from Resequencing Data
    Genetics (3 November 2008), genetics.107.080630.
    by Rong Jiang, Simon Tavare, Paul Marjoram
    posted to population_genomics population_genetics by stajich to the group Berkeley Mycology on 2008-11-04 05:50:49 as ** along with 4 people and 1 group natstreet djkt abizar druvus iSEEM
  • TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway
    Nature Structural & Molecular Biology, Vol. 15, No. 10. (07 September 2008), pp. 1015-1023.
    by Marc Bühler, Noah Spies, David P Bartel, Danesh Moazed
    posted to smallrna sirna pombe fungi by stajich to the group Berkeley Mycology on 2008-11-03 18:41:06 as **
  • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    Nature (28 September 2008)
    by Lyris MF de Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann
    posted to yeast proteomics by stajich to the group Berkeley Mycology on 2008-10-30 00:36:33 as ** along with 7 people and 1 group raiyar oelemento neils caseybrown dullhunk brianb thomaskelder microbiology_nijmegen
  • Funybase: a Fungal phylogenomic database
    BMC Bioinformatics, Vol. 9 (27 October 2008), 456.
    by Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, Annie Gendrault, Tatiana Giraud, Elisabeth Fournier, Manuela Lopez-Villavicencio, Angelique Gautier, Marc-Henri Lebrun, Helene Chiapello
    posted to phylogenomics phylogenetics genome fungi database annotation by stajich to the group Berkeley Mycology on 2008-10-29 22:23:48 as ** along with 3 people ojabado druvus nklee
  • Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jung Soh, Paul Gordon, Morgan Taschuk, Anguo Dong, Andrew A Seng, Andrei Turinsky, Christoph Sensen
    posted to xml genome browser bioinformatics annotation by stajich to the group Berkeley Mycology on 2008-10-29 22:23:18 as ** along with 9 people and 1 group dcolosi treangen guhjy barriot Zephyrus joaocarrico GeeSharpMinor neils druvus Roswell Cancer Crosstalk
  • MetaMine - A tool to detect and analyse gene patterns in their environmental context
    BMC Bioinformatics, Vol. 9 (28 October 2008), 459.
    by Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, Frank O Glockner
    posted to metagenomics genomics environmental_microbiology environment by stajich to the group Berkeley Mycology on 2008-10-29 22:22:49 as ** along with 3 people and 1 group guhjy djkt druvus iSEEM
  • Codon Optimization Increases Steady-State mRNA Levels in Aspergillus oryzae Heterologous Gene Expression
    Appl. Environ. Microbiol., Vol. 74, No. 21. (1 November 2008), pp. 6538-6546.
    by Masafumi Tokuoka, Mizuki Tanaka, Kazuhisa Ono, Shinobu Takagi, Takahiro Shintani, Katsuya Gomi
    posted to nmd gene_expression engineering codon_bias aspergillus by stajich to the group Berkeley Mycology on 2008-10-27 22:37:36 as **
  • A Catalog of Neutral and Deleterious Polymorphism in Yeast
    PLoS Genet, Vol. 4, No. 8. (2008), e1000183.
    by Scott W Doniger, Hyun S Kim, Devjanee Swain, Daniella Corcuera, Morgan Williams, Shiaw-Pyng Yang, Justin C Fay
    posted to saccharomyces polymorphism neutral mutation_rate genome deleterious by stajich to the group Berkeley Mycology on 2008-10-27 20:00:35 as ** along with 6 people GustavoLacerda madreach druvus emptyhb bpcusack caseybrown
  • Coprinus Cinereus rad50 Mutants Reveal an Essential Structural Role for Rad50 in Axial Element and Synaptonemal Complex Formation, Homolog Pairing, and Meiotic Recombination.
    Genetics (20 October 2008)
    by Sonia Acharya, Alexander M M Many, Andrew Schroeder, Felicia Kennedy, Oleksandr P P Savytskyy, Jennifer Grubb, Jack Vincent, Elizabeth Friedle, Martina Celerin, Daniel Maillet, Heather J J Palmerini, Megan A A Greischar, Gabriel Moncalian, R Scott S Williams, John A A Tainer, Miriam E E Zolan
    posted to recombination rad50 meiosis coprinus centromere by stajich to the group Berkeley Mycology on 2008-10-27 19:58:25 as **
  • Identification of all FK506-binding proteins from Neurospora crassa.
    Fungal genetics and biology : FG & B (10 October 2008)
    by Débora Pinto, Margarida Duarte, Susana Soares, Maximilian Tropschug, Arnaldo Videira
    posted to protein neurospora interfaction drug_resistance antifungal by stajich to the group Berkeley Mycology on 2008-10-27 19:56:57 as **
  • Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs
    Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12218-12223.
    by Daniel J Coughlin, Jeffrey A Pleiss, Scott C Walker, Gregg B Whitworth, David R Engelke
    posted to snorna smallrna rnasep by stajich to the group Berkeley Mycology on 2008-10-27 15:29:46 as ** along with 1 person zwang
  • Identification of the novel penicillin biosynthesis gene aatB of Aspergillus nidulans and its putative evolutionary relationship to this fungal secondary metabolism gene cluster.
    Molecular microbiology, Vol. 70, No. 2. (October 2008), pp. 445-461.
    by P Spröte, MJ Hynes, P Hortschansky, E Shelesty, DH Scharf, SM Wolke, AA Brakhage
    posted to penicillium penicillin aspergillus by stajich to the group Berkeley Mycology on 2008-10-27 15:28:28 as **
  • Fusion and Fission of Genes Define a Metric between Fungal Genomes
    PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000200.
    by Pascal Durrens, Macha Nikolski, David Sherman
    posted to yeast neurospora genome_evolution gene fungi filamentous evolution duplication by stajich to the group Berkeley Mycology on 2008-10-27 15:24:03 as ** along with 5 people and 1 group jameswasmuth skembel cthachuk taguchi djkt iSEEM
  • High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
    PLoS Biology, Vol. 6, No. 10. (1 October 2008), e251.
    by Josefa González, Kapa Lenkov, Mikhail Lipatov, Michael J Macpherson, Dmitri A Petrov
    posted to transposon transposable_elements drosophila by stajich to the group Berkeley Mycology on 2008-10-22 19:30:33 as ** along with 4 people Neeperando cabbagesofdoom biomcgary djkt
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