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Group: Berkeley Mycology - library [366 articles]

Neue Artikel von Mitliedern der Gruppe Berkeley Mycology Gruppe
  • GBParsy: A GenBank flatfile parser library with high speed
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Tae H Lee, Yeon K Kim, Baek H Nahm
    posted to parser methods bioinformatics by stajich to the group Berkeley Mycology on 2008-07-25 17:03:34 as **
  • EVOLUTION: Modernizing the Modern Synthesis
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 196-197.
    by Elizabeth Pennisi
    posted to modernsynthesis evolutionary_theory evolution by stajich to the group Berkeley Mycology on 2008-07-25 06:44:15 as ** along with 1 person renatomilani
  • Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by CD Warden, SH Kim, SV Yi
    posted to saccharomyces rna noncoding_rna by stajich to the group Berkeley Mycology on 2008-07-21 05:56:32 as **
  • Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wei Sun, Shinsheng Yuan, Ker C Li
    posted to quantitative_genetics qtl methods eqtl by stajich to the group Berkeley Mycology on 2008-07-21 05:55:46 as ** along with 3 people caseybrown ddunbar natstreet
  • An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by I Lee, Z Li, EM Marcotte
    posted to saccharomyces gene_network bioinformatics by stajich to the group Berkeley Mycology on 2008-07-21 05:00:25 as **
  • Sexual attraction: on the role of fungal pheromone/receptor systems (A review).
    Acta microbiologica et immunologica Hungarica, Vol. 55, No. 2. (June 2008), pp. 125-143.
    by E Kothe
    posted to signaling receptor pheremone fungi fungal by stajich to the group Berkeley Mycology on 2008-07-21 04:20:07 as **
  • The asexual yeast Candida glabrata maintains distinct a and alpha haploid mating types.
    Eukaryotic cell, Vol. 7, No. 5. (May 2008), pp. 848-858.
    by H Muller, C Hennequin, J Gallaud, B Dujon, C Fairhead
    posted to saccharomyces mating_type mating_genes genome fungi candida by stajich to the group Berkeley Mycology on 2008-07-21 04:14:00 as **
  • Evolution and phylogenetic relationships of APSES proteins from Hemiascomycetes.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 511-519.
    by B Ramírez-Zavala, A Domínguez
    posted to saccharomyces phylogenetics fungi evolution by stajich to the group Berkeley Mycology on 2008-07-21 04:13:26 as **
  • Exploring contradictory phylogenetic relationships in yeasts.
    FEMS yeast research, Vol. 8, No. 4. (June 2008), pp. 641-650.
    by Q Wu, SA James, IN Roberts, V Moulton, KT Huber
    posted to yeast systematics saccharomyces phylogeny fungi by stajich to the group Berkeley Mycology on 2008-07-21 04:12:58 as **
  • A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae.
    Comparative and functional genomics, Vol. 2, No. 3. (2001), pp. 124-142.
    by PW de Groot, C Ruiz, CR Vázquez de Aldana, E Duenas, VJ Cid, F Del Rey, JM Rodríquez-Peña, P Pérez, A Andel, J Caubín, J Arroyo, JC García, C Gil, M Molina, LJ García, C Nombela, FM Klis
    posted to saccharomyces fungal cell_wall by stajich to the group Berkeley Mycology on 2008-07-21 04:08:17 as **
  • GENOMICS: Billion-Dollar Cancer Mapping Project Steps Forward
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 26a-27.
    by Jocelyn Kaiser
    posted to news genomics funding cancer by stajich to the group Berkeley Mycology on 2008-07-16 17:55:26 as ** along with 1 person reyez
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to visualization protein_interactions protein methods graphics bioinformatics by stajich to the group Berkeley Mycology on 2008-07-16 17:12:31 as ** along with 14 people lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali chad_davis renatomilani askrajiv Borelli nuin reyez kengg Ema
  • Conditional Variable Importance for Random Forests
    BMC Bioinformatics, Vol. 9 (11 July 2008), 307.
    by Carolin Strobl, Anne-Laure Boulesteix, Thomas Kneib, Thomas Augustin, Achim Zeileis
    posted to randomforest methods bioinformatics by stajich to the group Berkeley Mycology on 2008-07-16 12:29:30 as ** along with 1 person jyuh
  • How Well Does the HoT Score Reflect Sequence Alignment Accuracy?
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580.
    by Barry G Hall
    posted to statistics molecular_evolution methods bioinformatics alignment by stajich to the group Berkeley Mycology on 2008-07-15 16:36:43 as **
  • A genome-wide 20K citrus microarray for gene expression analysis
    BMC Genomics, Vol. 9 (03 July 2008), 318.
    by Angeles M Martinez-Godoy, Nuria Mauri, Jose Juarez, Carmen M Marques, Julia Santiago, Javier Forment, Jose Gadea
    posted to plant microarray citrus by stajich to the group Berkeley Mycology on 2008-07-09 05:44:15 as ** along with 1 person JavierTerol
  • Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi
    BMC Evolutionary Biology, Vol. 8 (01 July 2008), 190.
    by Chendhore S Veerappan, Zoya Avramova, Etsuko N Moriyama
    posted to yeast multicellular fungi filamentous by stajich to the group Berkeley Mycology on 2008-07-09 00:20:23 as **
  • The ins and outs of plant cell walls.
    Current opinion in plant biology, Vol. 9, No. 6. (December 2006), pp. 616-620.
    by JN Johansen, S Vernhettes, H Höfte
    posted to plant cell_wall cellulose_synthase by stajich to the group Berkeley Mycology on 2008-07-08 22:45:31 as **
  • Growth of the plant cell wall
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 11. (01 November 2005), pp. 850-861.
    by Daniel J Cosgrove
    posted to plant cellulose_synthase by stajich to the group Berkeley Mycology on 2008-07-08 22:08:53 as **
  • Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1133-1142.
    by Nitin Gupta, Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S Lipton, Margaret Romine, Vineet Bafna, Richard D Smith, Pavel A Pevzner
    posted to undergraduate_research proteomics by stajich to the group Berkeley Mycology on 2008-07-08 18:20:05 as ** along with 1 person biehl
  • A Gene Wiki for Community Annotation of Gene Function
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e175.
    by Jon W Huss, Camilo Orozco, James Goodale, Chunlei Wu, Serge Batalov, Tim J Vickers, Faramarz Valafar, Andrew I Su
    posted to wiki gene annotation by stajich to the group Berkeley Mycology on 2008-07-08 16:23:50 as ** along with 12 people and 1 group inesdesantiago thomaskelder GMTurner ChrisEvelo barriot kristina reyez zwang kintoki sjc tharris dullhunk VisionLab
  • Cloning of cellulose synthesis related genes from Acetobacter xylinum ATCC23769 and ATCC53582: comparison of cellulose synthetic ability between strains.
    DNA Res, Vol. 9, No. 5. (31 October 2002), pp. 149-156.
    by S Kawano, K Tajima, Y Uemori, H Yamashita, T Erata, M Munekata, M Takai
    posted to cellulose_synthase bacteria by stajich to the group Berkeley Mycology on 2008-07-08 06:59:27 as ** along with 1 person orenoCiteULike
  • Genes required for cellulose synthesis in Agrobacterium tumefaciens
    J. Bacteriol., Vol. 177, No. 4. (1 February 1995), pp. 1069-1075.
    by AG Matthysse, S White, R Lightfoot
    posted to cellulose_synthase bacteria by stajich to the group Berkeley Mycology on 2008-07-08 06:59:19 as **
  • Cellulose Synthesis in Phytophthora infestans Is Required for Normal Appressorium Formation and Successful Infection of Potato
    Plant Cell, Vol. 20, No. 3. (1 March 2008), pp. 720-738.
    by Laura J Grenville-Briggs, Victoria L Anderson, Johanna Fugelstad, Anna O Avrova, Jamel Bouzenzana, Alison Williams, Stephan Wawra, Stephen C Whisson, Paul R Birch, Vincent Bulone, Pieter van West
    posted to phytophthora cell_wall cellulose_synthase by stajich to the group Berkeley Mycology on 2008-07-08 01:51:23 as **
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetics phylogenetic_marker_selection methods by stajich to the group Berkeley Mycology on 2008-07-07 04:58:37 as ** along with 6 people aprasad djkt gulsacan dchughes marck caseybrown
  • Degradation of cellulose by basidiomycetous fungi.
    FEMS microbiology reviews, Vol. 32, No. 3. (May 2008), pp. 501-521.
    by P Baldrian, V Valásková
    posted to cellulose_degradation basidiomycota by stajich to the group Berkeley Mycology on 2008-07-07 03:50:20 as **
  • Comparison of killer toxin-producing and non-producing strains of Filobasidium capsuligenum: proposal for two varieties.
    Microbiological research, Vol. 163, No. 3. (2008), pp. 267-276.
    by A Keszthelyi, Z Hamari, I Pfeiffer, C Vágvölgyi, J Kucsera
    posted to toxin cryptococcus antifungal by stajich to the group Berkeley Mycology on 2008-07-07 03:45:48 as **
  • Neurospora crassa heat shock factor-1 is an essential gene; a second heat shock factor-like gene, hsf2, is required for asexual spore formation.
    Eukaryotic cell (27 June 2008)
    by Seona Thompson, Nirvana J J Croft, Antonis Sotiriou, Hugh D D Piggins, Susan K K Crosthwaite
    posted to neurospora heat_shock gene_expression asexual_development by stajich to the group Berkeley Mycology on 2008-07-07 03:42:48 as **
  • VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism.
    Science (New York, N.Y.), Vol. 320, No. 5882. (13 June 2008), pp. 1504-1506.
    by O Bayram, S Krappmann, M Ni, JW Bok, K Helmstaedt, O Valerius, S Braus-Stromeyer, NJ Kwon, NP Keller, JH Yu, GH Braus
    posted to secondary_metabolite light_response gene_expression development aspergillus by stajich to the group Berkeley Mycology on 2008-07-07 03:38:45 as ** along with 1 person bcondon
  • The multiple gene duplication problem revisited.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by MS Bansal, O Eulenstein
    posted to methods genome gene_duplication bioinformatics by stajich to the group Berkeley Mycology on 2008-07-07 03:37:26 as ** along with 1 person tharris
  • Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities
    BMC Genomics, Vol. 9 (29 April 2008), 200.
    by Bryony AP Williams, Renny CH Lee, James J Becnel, Louis M Weiss, Naomi M Fast, Patrick J Keeling
    posted to microsporidia genome comparative_genomics by stajich to the group Berkeley Mycology on 2008-07-07 03:36:49 as **
  • Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici
    BMC Genomics, Vol. 9 (01 May 2008), 203.
    by Yonghong Zhang, Zhipeng Qu, Wenming Zheng, Bo Liu, Xiaojie Wang, Xiaodan Xue, Liangsheng Xu, Lili Huang, Qingmei Han, Jie Zhao, Zhensheng Kang
    posted to puccinia gene_expression development by stajich to the group Berkeley Mycology on 2008-07-07 03:35:47 as **
  • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    Nature (25 June 2008)
    by David, Mark D Rausher
    posted to plants gene duplication anthocyanin by stajich to the group Berkeley Mycology on 2008-07-07 03:32:20 as ** along with 1 person bpcusack
  • A max-margin model for efficient simultaneous alignment and folding of RNA sequences.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by CB Do, CS Foo, S Batzoglou
    posted to rna methods folding bioinformatics alignment by stajich to the group Berkeley Mycology on 2008-07-07 03:32:02 as ** along with 1 person bootsy
  • Meiotic silencing by unpaired DNA: properties, regulation and suppression.
    Genetics, Vol. 161, No. 4. (August 2002), pp. 1483-1495.
    by PK Shiu, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich to the group Berkeley Mycology on 2008-07-02 01:18:39 as **
  • SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2243-2248.
    by PK Shiu, D Zickler, NB Raju, G Ruprich-Robert, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich to the group Berkeley Mycology on 2008-07-02 01:18:23 as **
  • Meiotic silencing by unpaired DNA.
    Cell, Vol. 107, No. 7. (28 December 2001), pp. 905-916.
    by PK Shiu, NB Raju, D Zickler, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich to the group Berkeley Mycology on 2008-07-02 01:17:57 as ** along with 1 person erbon
  • Species Names in the <i>PhyloCode</i>: The Approach Adopted by the International Society for Phylogenetic Nomenclature
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 507-514.
    by Benoît Dayrat, Philip D Cantino, Julia A Clarke, Kevin de Queiroz
    posted to phylocode by stajich to the group Berkeley Mycology on 2008-07-01 16:57:45 as **
  • Climate Change and the Future of California's Endemic Flora
    PLoS ONE, Vol. 3, No. 6. (25 June 2008), e2502.
    by Scott R Loarie, Benjamin E Carter, Katharine Hayhoe, Sean Mcmahon, Richard Moe, Charles A Knight, David D Ackerly
    posted to plants diversity climate_change by stajich to the group Berkeley Mycology on 2008-07-01 15:10:45 as **
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to transcription_factor promotor evolution evodevo even-skipped drosophila binding_site by stajich to the group Berkeley Mycology on 2008-06-28 18:16:38 as ** along with 5 people and 1 group emptyhb pradiptaray cisevol caseybrown djkt cis-regulatory-evolution
  • Assembly of Viral Metagenomes from Yellowstone Hot Springs
    Appl. Environ. Microbiol., Vol. 74, No. 13. (1 July 2008), pp. 4164-4174.
    by Thomas Schoenfeld, Melodee Patterson, Paul M Richardson, Eric K Wommack, Mark Young, David Mead
    posted to yellowstone virus thermophile metagenomics hot_spring extremophile by stajich to the group Berkeley Mycology on 2008-06-27 05:04:26 as ** along with 2 people tharris skato_toyaku
  • Reprogramming a maize plant: Transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis.
    The Plant journal : for cell and molecular biology (18 June 2008)
    by Gunther Doehlemann, Ramon Wahl, Robin J J Horst, Lars M M Voll, Björn Usadel, Fabien Poree, Mark Stitt, Jörn Pons-Kühnemann, Uwe Sonnewald, Regine Kahmann, Jörg Kämper
    posted to ustilago transcriptional_regulation plantpathogen maize by stajich to the group Berkeley Mycology on 2008-06-26 08:04:59 as ** along with 1 person bcondon
  • The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e135.
    by Carol A Edwards, Andrew J Mungall, Lucy Matthews, Edward Ryder, Dionne J Gray, Andrew J Pask, Geoffrey Shaw, Jennifer A Graves, Jane Rogers, Ian Dunham, Marilyn B Renfree, Anne C Ferguson-Smith
    posted to mirna mammal imprinting by stajich to the group Berkeley Mycology on 2008-06-26 07:08:15 as ** along with 3 people clearbluespring icq242500260 djkt
  • Tinker where the tinkering's good.
    Trends in genetics : TIG (29 May 2008)
    by Matthew V V Rockman, David L L Stern
    posted to evolution evodevo drosophila cis-regulatory by stajich to the group Berkeley Mycology on 2008-06-22 20:12:47 as ** along with 1 person Stew
  • Sex chromosomes and speciation in Drosophila
    Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 336-343.
    by Daven C Presgraves
    posted to speciation sex_chromosome drosophila by stajich to the group Berkeley Mycology on 2008-06-22 20:12:28 as ** along with 1 person pradiptaray
  • MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen
    posted to regulatory_evolution regulation noncoding_rna mirna metazoan gene_expression by stajich to the group Berkeley Mycology on 2008-06-22 20:12:11 as ** along with 4 people and 1 group bertelsen biozy imtechnology maralena microRNA
  • Population genomics of domestic and wild yeasts
    Nature Precedings (19 June 2008)
    by David Carter, Gianni Liti, Alan Moses, Leopold Parts, Stephen James, Robert Davey, Ian Roberts, Anders Blomberg, Jonas Warringer, Austin Burt, Vassiliki Koufopanou, Isheng Tsai, Casey Bergman, Douda Bensasson, Michael O’kelly, Alexander van Oudenaarden, David Barton, Elizabeth Bailes, Matthew Jones, Michael Quail, Ian Goodhead, Sarah Sims, Frances Smith, Richard Durbin, Edward Louis
    posted to yeast population_genomics population_genetics by stajich to the group Berkeley Mycology on 2008-06-21 17:21:29 as ** along with 1 person michaelbarton
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to intron_sliding intron_loss intron_gain intron_evolution evolution by stajich to the group Berkeley Mycology on 2008-06-20 18:00:42 as ** along with 3 people clearbluespring bootsy imtechnology
  • Mycobiota and mycotoxin producing fungi from cocoa beans.
    International journal of food microbiology (2 May 2008)
    by M Sánchez-Hervás, J V V Gil, F Bisbal, D Ramón, P V V Martínez-Culebras
    posted to plantpathogen mycotoxin fungi cocoa by stajich to the group Berkeley Mycology on 2008-06-16 04:07:44 as **
  • Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete.
    Molecular phylogenetics and evolution (29 April 2008)
    by József Geml, Rodham E E Tulloss, Gary A A Laursen, Nina A A Sazanova, D L L Taylor
    posted to population_genetics phylogeography mycorrhizal fungi dispersal amanita by stajich to the group Berkeley Mycology on 2008-06-15 23:42:10 as ** along with 1 person pradiptaray
  • An Improved General Amino Acid Replacement Matrix
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320.
    by Si Q Le, Olivier Gascuel
    posted to protein_evolution phylogenetics molecular_evolution methods evolution bioinformatics by stajich to the group Berkeley Mycology on 2008-06-14 07:08:01 as ** along with 1 person friendpine
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