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Group: cis-regulatory-evolution - with tag mammals [106 articles]

Neue Artikel von Mitliedern der Gruppe cis-regulatory-evolution Gruppe with tag mammals
  • Retroviral promoters in the human genome
    Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1563-1567.
    by Andrew B Conley, Jittima Piriyapongsa, King I Jordan
    posted to transposon promoter mammals by cisevol to the group cis-regulatory-evolution on 2008-07-10 13:36:29 as ** along with 2 people and 1 group maximilianh idonaldson BergmanLab
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to transposon mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-05-29 22:08:58 as ** along with 1 person and 1 group pradiptaray BergmanLab
  • Regulatory divergence modifies limb length between mammals
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 141-151.
    by Chris J Cretekos, Ying Wang, Eric D Green, Nisc, James F Martin, John J Rasweiler, Richard R Behringer
    posted to mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-05-29 10:25:38 as ** along with 1 person dchughes
  • Resurrection of DNA function in vivo from an extinct genome.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by AJ Pask, RR Behringer, MB Renfree
    posted to mammals cis-regulatory ancient_dna by cisevol to the group cis-regulatory-evolution on 2008-05-23 19:08:52 as ** along with 1 person pradiptaray
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-05-18 14:41:37 as ** along with 2 people aprasad Stew
  • Retrotransposition as a Source of New Promoters.
    Mol Biol Evol (25 March 2008)
    by Kohji Okamura, Kenta Nakai
    posted to mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-05-18 14:40:55 as ** along with 2 people clearbluespring rschulz
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to transposon mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-05-16 15:21:47 as ** along with 1 person and 3 groups dchughes BergmanLab G4ID Genetics-of-Gambling
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to transposon mammals cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-04-26 19:38:10 as ** along with 1 person and 1 group FMoncini BergmanLab
  • Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs
    BMC Genomics, Vol. 9 (02 April 2008), 152.
    by Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2008-04-04 20:12:38 as **
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol to the group cis-regulatory-evolution on 2008-02-05 21:22:12 as ** along with 6 people and 4 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling BergmanLab
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-02-05 21:18:50 as ** along with 1 person and 1 group maximilianh BergmanLab
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol to the group cis-regulatory-evolution on 2008-02-04 22:40:36 as ** along with 3 people and 1 group dchughes djkt biomcgary BergmanLab
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2008-01-30 20:38:40 as ** along with 5 people brant cjeans zwang idonaldson renatomilani
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan I Montoya-Burgos, Konstantin Popadin, Leila Parand, Elliott H Margulies, National, Stylianos E Antonarakis
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2008-01-30 20:36:12 as ** along with 4 people aprasad djkt cjeans zwang
  • A genome-wide screen for noncoding elements important in primate evolution
    BMC Evolutionary Biology, Vol. 8 (23 January 2008), 17.
    by Eliot C Bush, Bruce T Lahn
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2008-01-28 09:38:13 as **
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2008-01-20 22:36:40 as ** along with 6 people and 1 group gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin BergmanLab
  • Multiple Organism Algorithm for Finding Ultraconserved Elements
    BMC Bioinformatics, Vol. 9 (11 January 2008), 15.
    by Scott Christley, Neil F Lobo, Greg Madey
    posted to mammals model noncoding by cisevol to the group cis-regulatory-evolution on 2008-01-12 15:11:22 as ** along with 2 people fpattyn yoanjacquemin
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-12-22 13:26:58 as ** along with 2 people and 1 group blobbybirdman idonaldson BergmanLab
  • Compositional evolution of noncoding DNA in the human and chimpanzee genomes.
    Mol Biol Evol, Vol. 20, No. 2. (February 2003), pp. 278-286.
    by MT Webster, NG Smith, H Ellegren
    posted to mammals noncoding variation by cisevol to the group cis-regulatory-evolution on 2007-12-10 22:13:50 as **
  • Prediction of synergistic transcription factors by function conservation
    Genome Biology, Vol. 8, No. 12. (2007)
    by Zihua Hu, Boyu Hu, James Collins
    posted to cis-regulatory mammals model noalignment by maximilianh to the group cis-regulatory-evolution on 2007-12-08 15:12:16 as ** along with 3 people cjeans nklee ale
  • Characterization of the Duffy gene promoter: evidence for tissue-specific abolishment of expression in Fy(a-b-) of black individuals.
    Biochem Biophys Res Commun, Vol. 222, No. 3. (24 May 1996), pp. 852-859.
    by S Iwamoto, J Li, N Sugimoto, H Okuda, E Kajii
    posted to cis-regulatory mammals variation by dpollard to the group cis-regulatory-evolution on 2007-12-05 23:03:10 as *** along with 1 group EisenLab
  • Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus.
    Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679.
    by MT Hamblin, A Di Rienzo
    posted to cis-regulatory mammals variation by dpollard to the group cis-regulatory-evolution on 2007-12-05 22:53:19 as *** along with 1 group EisenLab
  • Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals.
    Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228.
    by C Tournamille, Y Colin, JP Cartron, C Le Van Kim
    posted to cis-regulatory mammals variation by dpollard to the group cis-regulatory-evolution on 2007-12-05 22:51:02 as *** along with 1 group EisenLab
  • Conserved eukaryotic transposable elements and the evolution of gene regulation.
    Cell Mol Life Sci (20 November 2007)
    by J Jurka
    posted to cis-regulatory mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-11-22 15:36:44 as ** along with 5 people and 1 group gpappas dchughes Stew maximilianh idonaldson BergmanLab
  • Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10.
    by Mark T Romanish, Wynne M Lock, Louie N de Lagemaat, Catherine A Dunn, Dixie L Mager
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-11-01 10:55:08 as ** along with 3 people and 3 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling BergmanLab
  • Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time
    BMC Genomics, Vol. 8, No. 1. (2007)
    by Dorota Retelska, Emmanuel Beaudoing, Cedric Notredame, Victor C Jongeneel, Philipp Bucher
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-11-01 10:17:24 as ** along with 1 person maximilianh
  • Using Reporter Gene Assays to Identify cis Regulatory Differences Between Humans and Chimpanzees
    Genetics, Vol. 176, No. 4. (1 August 2007), pp. 2069-2076.
    by Adrien Chabot, Ralla A Shrit, Ran Blekhman, Yoav Gilad
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-29 22:17:27 as ** along with 1 person mimulus_99
  • Selective constraint on noncoding regions of hominid genomes.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by EC Bush, BT Lahn
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-29 22:06:29 as ** along with 1 person balicea
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to cis-regulatory mammals by dpollard to the group cis-regulatory-evolution on 2007-10-29 19:07:04 as ** along with 9 people and 3 groups gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere EisenLab G4ID Genetics-of-Gambling
  • Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences
    BMC Genomics, Vol. 8 (08 August 2007), 271.
    by Daniel Rico, Juan M Vaquerizas, Hernan Dopazo, Lisardo Bosca
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-29 13:52:22 as **
  • Functional noncoding sequences derived from SINEs in the mammalian genome.
    Genome Res (22 May 2006)
    by Hidenori Nishihara, Arian F A F Smit, Norihiro Okada
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:47:38 as ** along with 3 people and 2 groups dchughes mtagaya FMoncini G4ID Genetics-of-Gambling
  • A family of conserved noncoding elements derived from an ancient transposable element
    PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11659-11664.
    by Xiaohui Xie, Michael Kamal, Eric S Lander
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:46:41 as ** along with 2 people and 3 groups dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • A large family of ancient repeat elements in the human genome is under strong selection
    PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.
    by Michael Kamal, Xiaohui Xie, Eric S Lander
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:45:59 as ** along with 4 people and 1 group aprasad balicea cmm gjuggler FAB-lab
  • A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e176.
    by Erika M Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D Makova
    posted to indel mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-28 18:28:58 as ** along with 2 people aprasad djkt
  • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010.
    by Craig B Lowe, Gill Bejerano, David Haussler
    posted to mammals noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-28 15:55:20 as ** along with 3 people pradiptaray bpb FMoncini
  • Signatures of adaptive evolution within human non-coding sequence.
    Hum Mol Genet, Vol. 15 Suppl 2 (15 October 2006)
    by CP Ponting, G Lunter
    posted to mammals noncoding review by cisevol to the group cis-regulatory-evolution on 2007-10-27 17:35:44 as ** along with 1 person eckart_bindewald
  • Whole-genome cartography of estrogen receptor alpha binding sites.
    PLoS Genet, Vol. 3, No. 6. (June 2007)
    by CY Lin, VB Vega, JS Thomsen, T Zhang, SL Kong, M Xie, KP Chiu, L Lipovich, DH Barnett, F Stossi, A Yeo, J George, VA Kuznetsov, YK Lee, TH Charn, N Palanisamy, LD Miller, E Cheung, BS Katzenellenbogen, Y Ruan, G Bourque, CL Wei, ET Liu
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-27 16:08:12 as ** along with 2 people jfr vega
  • Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Andrea M M Santangelo, Flávio S J S de Souza, Lucía F F Franchini, Viviana F F Bumaschny, Malcolm J J Low, Marcelo Rubinstein
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-26 22:11:35 as ** along with 1 person and 1 group gpappas BergmanLab
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-24 23:35:41 as ** along with 13 people and 4 groups pradiptaray karbak barry ujh alexisgallagher bpb aprasad balicea dchughes djkt sujaikumar blobbybirdman fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling
  • The strength of selection on ultraconserved elements in the human genome.
    Am J Hum Genet, Vol. 80, No. 4. (April 2007), pp. 692-704.
    by CT Chen, JC Wang, BA Cohen
    posted to mammals noncoding variation by cisevol to the group cis-regulatory-evolution on 2007-10-24 23:35:13 as ** along with 2 people bpcusack gjuggler
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to mammals noncoding variation by cisevol to the group cis-regulatory-evolution on 2007-10-24 23:34:48 as ** along with 9 people bpcusack aprasad balicea djkt lp2 cabbagezs Minty fpattyn gjuggler
  • Housekeeping genes tend to show reduced upstream sequence conservation
    Genome Biology, Vol. 8 (13 July 2007), R140.
    by Domenec Farre, Nicolas Bellora, Loris Mularoni, Xavier Messeguer, Mar
    posted to cis-regulatory mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-23 19:01:52 as ** along with 3 people and 2 groups djkt Garamonfok gjuggler Bioinformatics BergmanLab
  • Evolution of a polymorphic regulatory element in interferon-gamma through transposition and mutation.
    Mol Biol Evol, Vol. 19, No. 6. (June 2002), pp. 884-890.
    by H Ackerman, I Udalova, J Hull, D Kwiatkowski
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:11:38 as ** along with 1 person olympos
  • Widely distributed noncoding purifying selection in the human genome
    PNAS (17 July 2007), 0705140104.
    by Saurabh Asthana, William S Noble, Gregory Kryukov, Charles E Grant, Shamil Sunyaev, John A Stamatoyannopoulos
    posted to mammals noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:11:30 as ** along with 5 people bpcusack pradiptaray bpb cabbagezs mimulus_99
  • Phylogenetic footprinting of the human cytochrome c oxidase subunit VB promoter.
    Arch Biochem Biophys, Vol. 333, No. 1. (1 September 1996), pp. 152-162.
    by NJ Bachman, TL Yang, JS Dasen, RE Ernst, MI Lomax
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:11:25 as **
  • The intracisternal A particle derived solo LTR promoter of the rat oncomodulin gene is not present in the mouse gene.
    Genetica, Vol. 86, No. 1-3. (1992), pp. 85-97.
    by D Banville, M Rotaru, Y Boie
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:10:47 as **
  • Cases of ancient mobile element DNA insertions that now affect gene regulation.
    Mol Phylogenet Evol, Vol. 5, No. 1. (February 1996), pp. 13-17.
    by RJ Britten
    posted to cis-regulatory mammals transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:28 as **
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:09 as ** along with 10 people and 3 groups jasonflannick jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao eviledv gjuggler G4ID EBI-regulation Genetics-of-Gambling
  • Promoter shuffling has occurred during the evolution of the vertebrate growth hormone gene.
    Gene, Vol. 254, No. 1-2. (22 August 2000), pp. 9-18.
    by NA Chuzhanova, M Krawczak, LA Nemytikova, VD Gusev, DN Cooper
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:09:04 as **
  • Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
    Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121.
    by Emmanouil T Dermitzakis, Andrew G Clark
    posted to cis-regulatory mammals by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:08:37 as ** along with 3 people and 1 group adepace emptyhb xili03 EisenLab
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